Wall clock time and date at job start Tue Mar 31 2020 15:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47312 * 2 1 4 4 C 1.52997 * 109.46941 * 239.99287 * 2 1 3 5 5 O 1.45206 * 109.46747 * 119.99816 * 2 1 3 6 6 C 1.34641 * 116.99794 * 59.99638 * 5 2 1 7 7 O 1.21504 * 120.00311 * 0.02562 * 6 5 2 8 8 N 1.34778 * 119.99737 * 180.02562 * 6 5 2 9 9 C 1.47574 * 134.49470 * 180.02562 * 8 6 5 10 10 C 1.53944 * 86.11619 * 204.63599 * 9 8 6 11 11 C 1.52999 * 113.74163 * 221.93426 * 10 9 8 12 12 C 1.52994 * 109.47408 * 183.07748 * 11 10 9 13 13 N 1.46508 * 109.47466 * 180.02562 * 12 11 10 14 14 C 1.36925 * 120.00179 * 89.99468 * 13 12 11 15 15 H 1.08001 * 120.00350 * 9.28178 * 14 13 12 16 16 C 1.38813 * 120.00051 * 189.28150 * 14 13 12 17 17 N 1.31621 * 120.00178 * 24.75450 * 16 14 13 18 18 Si 1.86805 * 120.00133 * 204.76181 * 16 14 13 19 19 H 1.48501 * 109.46970 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47112 * 119.99774 * 18 16 14 21 21 H 1.48493 * 109.47069 * 239.99891 * 18 16 14 22 22 C 1.46500 * 119.99513 * 269.99822 * 13 12 11 23 23 C 1.50707 * 109.47149 * 89.20345 * 22 13 12 24 24 O 1.20829 * 119.99661 * 0.02562 * 23 22 13 25 25 O 1.34225 * 119.99889 * 179.97438 * 23 22 13 26 26 C 1.47928 * 134.50165 * 0.02562 * 8 6 5 27 27 H 1.08999 * 109.47468 * 300.00719 * 1 2 3 28 28 H 1.09002 * 109.46695 * 60.00157 * 1 2 3 29 29 H 1.08994 * 109.47908 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46630 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47112 * 299.99588 * 3 2 1 32 32 H 1.08992 * 109.47589 * 59.99651 * 3 2 1 33 33 H 1.09002 * 109.47656 * 300.00604 * 4 2 1 34 34 H 1.09002 * 109.46972 * 60.00725 * 4 2 1 35 35 H 1.09004 * 109.46793 * 180.02562 * 4 2 1 36 36 H 1.09003 * 113.77488 * 90.33328 * 9 8 6 37 37 H 1.09005 * 113.76536 * 318.93280 * 9 8 6 38 38 H 1.09004 * 113.74479 * 90.74011 * 10 9 8 39 39 H 1.09003 * 109.47378 * 303.08199 * 11 10 9 40 40 H 1.09004 * 109.46903 * 63.07248 * 11 10 9 41 41 H 1.09004 * 109.47040 * 300.00030 * 12 11 10 42 42 H 1.08995 * 109.47524 * 60.00003 * 12 11 10 43 43 H 0.96995 * 120.00014 * 180.02562 * 17 16 14 44 44 H 1.08995 * 109.47047 * 209.19931 * 22 13 12 45 45 H 1.09003 * 109.47187 * 329.20672 * 22 13 12 46 46 H 0.96703 * 116.99871 * 179.97438 * 25 23 22 47 47 H 1.09004 * 113.87015 * 41.09474 * 26 8 6 48 48 H 1.08998 * 113.76803 * 269.60988 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2491 5 8 2.0139 -0.6845 1.1857 6 6 1.6520 -1.9723 1.3384 7 8 0.9514 -2.5097 0.5037 8 7 2.0669 -2.6654 2.4173 9 6 1.8719 -4.0475 2.8965 10 6 2.1464 -3.4870 4.3038 11 6 3.0448 -4.3826 5.1591 12 6 3.1904 -3.7744 6.5554 13 7 4.0513 -4.6316 7.3742 14 6 5.4046 -4.4248 7.3930 15 1 5.8229 -3.5442 6.9282 16 6 6.2393 -5.3469 8.0094 17 7 5.8549 -6.5991 8.1388 18 14 7.9079 -4.8107 8.6557 19 1 8.1004 -3.3627 8.3880 20 1 7.9748 -5.0574 10.1185 21 1 8.9752 -5.5858 7.9737 22 6 3.4639 -5.7103 8.1729 23 6 3.3963 -6.9682 7.3457 24 8 3.7980 -6.9642 6.2061 25 8 2.8908 -8.0932 7.8752 26 6 2.9006 -2.3464 3.5969 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 3.1300 1.4423 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6765 -1.7491 -1.2491 34 1 1.6767 -0.2076 -2.1392 35 1 3.1300 -0.7218 -1.2489 36 1 2.6320 -4.7456 2.5457 37 1 0.8562 -4.4197 2.7623 38 1 1.2488 -3.1603 4.8289 39 1 2.5990 -5.3740 5.2393 40 1 4.0271 -4.4626 4.6933 41 1 3.6363 -2.7830 6.4752 42 1 2.2082 -3.6944 7.0211 43 1 6.4379 -7.2433 8.5699 44 1 4.0809 -5.8874 9.0537 45 1 2.4588 -5.4258 8.4843 46 1 2.8678 -8.8746 7.3060 47 1 2.7059 -1.3615 4.0214 48 1 3.9623 -2.5457 3.4513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603384020.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:25 Heat of formation + Delta-G solvation = -112.229216 kcal Electronic energy + Delta-G solvation = -29007.469035 eV Core-core repulsion = 24872.033198 eV Total energy + Delta-G solvation = -4135.435837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.80931 -39.29841 -38.65667 -36.62125 -35.87479 -34.36152 -34.13400 -32.43871 -30.65217 -28.17266 -27.60278 -27.55193 -26.87073 -26.16840 -24.15852 -22.20440 -21.21564 -20.04331 -19.87431 -19.19694 -17.71402 -16.89893 -16.72247 -16.61227 -16.30202 -15.43243 -15.32610 -15.12806 -14.78071 -14.37744 -14.25295 -14.07771 -13.79127 -13.50996 -13.30279 -12.74358 -12.67360 -12.61471 -12.32178 -12.18056 -12.06780 -12.02421 -11.96402 -11.60278 -11.49207 -11.41928 -11.18487 -11.04711 -10.80519 -10.66007 -10.57580 -10.46868 -10.31607 -10.08311 -10.01077 -9.83295 -9.64906 -9.09437 -8.73387 -8.54848 -7.14955 -5.97027 -3.23134 2.00710 2.88953 3.33459 3.42203 3.44070 3.73856 3.92681 4.32924 4.51766 4.54151 4.57768 4.58082 4.72066 5.02573 5.07186 5.22933 5.25271 5.26113 5.33500 5.39515 5.48413 5.48466 5.55262 5.61524 5.64412 5.67001 5.76014 5.82207 5.87417 6.03924 6.10895 6.15354 6.19940 6.31213 6.41391 6.43863 6.47564 6.85052 6.91516 7.05481 7.19301 7.66873 7.72857 7.89956 8.13492 8.35344 8.99242 9.46044 9.70202 10.09875 11.14804 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.017794 B = 0.002600 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.175416 B =10766.403605 C =11762.255695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.362 6.362 6 C 0.670 3.330 7 O -0.576 6.576 8 N -0.634 5.634 9 C 0.136 3.864 10 C -0.118 4.118 11 C -0.128 4.128 12 C 0.148 3.852 13 N -0.571 5.571 14 C -0.249 4.249 15 H 0.082 0.918 16 C -0.002 4.002 17 N -0.904 5.904 18 Si 0.906 3.094 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.293 1.293 22 C 0.188 3.812 23 C 0.478 3.522 24 O -0.515 6.515 25 O -0.545 6.545 26 C 0.112 3.888 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.041 0.959 43 H 0.256 0.744 44 H 0.113 0.887 45 H 0.051 0.949 46 H 0.379 0.621 47 H 0.082 0.918 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.847 10.553 -9.813 17.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.277 6.277 6 C 0.427 3.573 7 O -0.467 6.467 8 N -0.376 5.376 9 C 0.015 3.985 10 C -0.138 4.138 11 C -0.168 4.168 12 C 0.021 3.979 13 N -0.290 5.290 14 C -0.378 4.378 15 H 0.100 0.900 16 C -0.199 4.199 17 N -0.550 5.550 18 Si 0.736 3.264 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.220 1.220 22 C 0.058 3.942 23 C 0.318 3.682 24 O -0.401 6.401 25 O -0.356 6.356 26 C -0.010 4.010 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.131 0.869 45 H 0.069 0.931 46 H 0.234 0.766 47 H 0.100 0.900 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.895 10.862 -10.288 17.937 hybrid contribution 1.132 -0.612 -0.461 1.367 sum -8.763 10.250 -10.749 17.245 Atomic orbital electron populations 1.22511 0.94130 1.05038 1.02288 1.22039 0.94313 0.91526 0.82350 1.21848 1.02290 0.92591 1.02981 1.22512 1.01567 1.03513 0.96427 1.86326 1.71376 1.23891 1.46115 1.17598 0.78999 0.80294 0.80441 1.90866 1.42425 1.70788 1.42620 1.48999 1.53293 1.14311 1.20981 1.23348 1.02394 0.82155 0.90608 1.23261 1.00003 0.96190 0.94338 1.22300 0.98801 0.98627 0.97088 1.20956 0.93586 0.94026 0.89283 1.44253 1.04050 1.31393 1.49305 1.19328 0.81856 1.04380 1.32221 0.89981 1.24746 0.98380 0.94562 1.02216 1.69837 1.38044 1.00842 1.46305 0.86152 0.83413 0.78110 0.78702 1.20261 1.21495 1.22032 1.20414 0.96695 0.82608 0.94470 1.25328 0.71146 0.84619 0.87102 1.90481 1.43951 1.84851 1.20810 1.84645 1.78324 1.22056 1.50553 1.23491 0.95995 1.00039 0.81452 0.92227 0.91308 0.89402 0.91474 0.90260 0.91483 0.89419 0.91278 0.92214 0.89265 0.90139 0.88336 0.90929 0.91204 0.92872 0.94049 0.93299 0.86921 0.93087 0.76589 0.89983 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 8.37 37.16 0.31 -1.61 16 2 C 0.13 1.49 1.13 -90.62 -0.10 1.39 16 3 C -0.14 -1.14 8.85 37.16 0.33 -0.82 16 4 C -0.18 -1.98 8.37 37.16 0.31 -1.67 16 5 O -0.36 -5.05 9.88 -40.33 -0.40 -5.45 16 6 C 0.67 10.40 8.22 54.06 0.44 10.84 16 7 O -0.58 -9.89 12.61 -19.27 -0.24 -10.13 16 8 N -0.63 -9.09 3.62 -183.91 -0.66 -9.76 16 9 C 0.14 1.82 8.40 -2.97 -0.02 1.79 16 10 C -0.12 -1.53 3.82 -89.70 -0.34 -1.87 16 11 C -0.13 -2.13 4.62 -26.73 -0.12 -2.26 16 12 C 0.15 2.63 5.71 -4.04 -0.02 2.60 16 13 N -0.57 -12.81 2.09 -174.61 -0.37 -13.18 16 14 C -0.25 -6.27 9.70 -15.06 -0.15 -6.42 16 15 H 0.08 2.02 7.93 -52.49 -0.42 1.61 16 16 C 0.00 -0.04 4.89 -17.43 -0.09 -0.13 16 17 N -0.90 -24.65 9.02 55.49 0.50 -24.15 16 18 Si 0.91 20.82 29.62 -169.99 -5.04 15.78 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 C 0.19 4.12 5.58 -5.19 -0.03 4.09 16 23 C 0.48 10.87 6.33 36.01 0.23 11.10 16 24 O -0.51 -13.06 14.42 -18.75 -0.27 -13.33 16 25 O -0.55 -10.72 13.42 -39.24 -0.53 -11.25 16 26 C 0.11 1.43 8.45 -2.78 -0.02 1.41 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.09 1.15 5.88 -51.93 -0.31 0.84 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 1.17 5.88 -51.93 -0.31 0.87 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.21 8.10 -51.93 -0.42 0.79 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.37 6.30 -51.93 -0.33 1.04 16 40 H 0.07 1.35 7.88 -51.93 -0.41 0.94 16 41 H 0.05 0.90 8.03 -51.93 -0.42 0.48 16 42 H 0.04 0.65 7.90 -51.93 -0.41 0.24 16 43 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.11 2.72 6.29 -51.93 -0.33 2.39 16 45 H 0.05 0.95 7.90 -51.93 -0.41 0.54 16 46 H 0.38 5.95 9.10 45.56 0.41 6.36 16 47 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.09 1.17 7.92 -51.93 -0.41 0.76 16 LS Contribution 387.28 15.07 5.84 5.84 Total: -1.00 -31.98 387.28 -7.55 -39.53 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -7.11 Total: 7.65 kcal Atomic # 6 Polarization: 17.72 SS G_CDS: 0.72 Total: 18.45 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.53 Total: -47.08 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -1.44 Total: -40.16 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.04 Total: 15.78 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.98 -7.55 -39.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603384020.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.703 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds