Wall clock time and date at job start Tue Mar 31 2020 15:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47312 * 2 1 4 4 C 1.52997 * 109.46941 * 239.99287 * 2 1 3 5 5 O 1.45206 * 109.46747 * 119.99816 * 2 1 3 6 6 C 1.34641 * 116.99794 * 59.99638 * 5 2 1 7 7 O 1.21504 * 120.00311 * 0.02562 * 6 5 2 8 8 N 1.34778 * 119.99737 * 180.02562 * 6 5 2 9 9 C 1.47574 * 134.49470 * 180.02562 * 8 6 5 10 10 C 1.53944 * 86.11619 * 204.63599 * 9 8 6 11 11 C 1.52999 * 113.74163 * 221.93426 * 10 9 8 12 12 C 1.52994 * 109.47408 * 183.07748 * 11 10 9 13 13 N 1.46508 * 109.47466 * 180.02562 * 12 11 10 14 14 C 1.36925 * 120.00179 * 89.99468 * 13 12 11 15 15 H 1.08001 * 120.00350 * 9.28178 * 14 13 12 16 16 C 1.38813 * 120.00051 * 189.28150 * 14 13 12 17 17 N 1.31621 * 120.00178 * 24.75450 * 16 14 13 18 18 Si 1.86805 * 120.00133 * 204.76181 * 16 14 13 19 19 H 1.48501 * 109.46970 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47112 * 119.99774 * 18 16 14 21 21 H 1.48493 * 109.47069 * 239.99891 * 18 16 14 22 22 C 1.46500 * 119.99513 * 269.99822 * 13 12 11 23 23 C 1.50707 * 109.47149 * 89.20345 * 22 13 12 24 24 O 1.20829 * 119.99661 * 0.02562 * 23 22 13 25 25 O 1.34225 * 119.99889 * 179.97438 * 23 22 13 26 26 C 1.47928 * 134.50165 * 0.02562 * 8 6 5 27 27 H 1.08999 * 109.47468 * 300.00719 * 1 2 3 28 28 H 1.09002 * 109.46695 * 60.00157 * 1 2 3 29 29 H 1.08994 * 109.47908 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46630 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47112 * 299.99588 * 3 2 1 32 32 H 1.08992 * 109.47589 * 59.99651 * 3 2 1 33 33 H 1.09002 * 109.47656 * 300.00604 * 4 2 1 34 34 H 1.09002 * 109.46972 * 60.00725 * 4 2 1 35 35 H 1.09004 * 109.46793 * 180.02562 * 4 2 1 36 36 H 1.09003 * 113.77488 * 90.33328 * 9 8 6 37 37 H 1.09005 * 113.76536 * 318.93280 * 9 8 6 38 38 H 1.09004 * 113.74479 * 90.74011 * 10 9 8 39 39 H 1.09003 * 109.47378 * 303.08199 * 11 10 9 40 40 H 1.09004 * 109.46903 * 63.07248 * 11 10 9 41 41 H 1.09004 * 109.47040 * 300.00030 * 12 11 10 42 42 H 1.08995 * 109.47524 * 60.00003 * 12 11 10 43 43 H 0.96995 * 120.00014 * 180.02562 * 17 16 14 44 44 H 1.08995 * 109.47047 * 209.19931 * 22 13 12 45 45 H 1.09003 * 109.47187 * 329.20672 * 22 13 12 46 46 H 0.96703 * 116.99871 * 179.97438 * 25 23 22 47 47 H 1.09004 * 113.87015 * 41.09474 * 26 8 6 48 48 H 1.08998 * 113.76803 * 269.60988 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2491 5 8 2.0139 -0.6845 1.1857 6 6 1.6520 -1.9723 1.3384 7 8 0.9514 -2.5097 0.5037 8 7 2.0669 -2.6654 2.4173 9 6 1.8719 -4.0475 2.8965 10 6 2.1464 -3.4870 4.3038 11 6 3.0448 -4.3826 5.1591 12 6 3.1904 -3.7744 6.5554 13 7 4.0513 -4.6316 7.3742 14 6 5.4046 -4.4248 7.3930 15 1 5.8229 -3.5442 6.9282 16 6 6.2393 -5.3469 8.0094 17 7 5.8549 -6.5991 8.1388 18 14 7.9079 -4.8107 8.6557 19 1 8.1004 -3.3627 8.3880 20 1 7.9748 -5.0574 10.1185 21 1 8.9752 -5.5858 7.9737 22 6 3.4639 -5.7103 8.1729 23 6 3.3963 -6.9682 7.3457 24 8 3.7980 -6.9642 6.2061 25 8 2.8908 -8.0932 7.8752 26 6 2.9006 -2.3464 3.5969 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 3.1300 1.4423 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6765 -1.7491 -1.2491 34 1 1.6767 -0.2076 -2.1392 35 1 3.1300 -0.7218 -1.2489 36 1 2.6320 -4.7456 2.5457 37 1 0.8562 -4.4197 2.7623 38 1 1.2488 -3.1603 4.8289 39 1 2.5990 -5.3740 5.2393 40 1 4.0271 -4.4626 4.6933 41 1 3.6363 -2.7830 6.4752 42 1 2.2082 -3.6944 7.0211 43 1 6.4379 -7.2433 8.5699 44 1 4.0809 -5.8874 9.0537 45 1 2.4588 -5.4258 8.4843 46 1 2.8678 -8.8746 7.3060 47 1 2.7059 -1.3615 4.0214 48 1 3.9623 -2.5457 3.4513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603384020.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:24 Heat of formation + Delta-G solvation = -131.909088 kcal Electronic energy + Delta-G solvation = -29008.322418 eV Core-core repulsion = 24872.033198 eV Total energy + Delta-G solvation = -4136.289220 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.89168 -40.54685 -40.22720 -37.82359 -37.42931 -36.11110 -35.08662 -34.02392 -32.23376 -29.60507 -28.55007 -28.38248 -28.30838 -27.23088 -25.75755 -23.54802 -22.54075 -21.61943 -21.10775 -20.24669 -18.82121 -18.68164 -18.35219 -17.73335 -17.43374 -17.05142 -16.79766 -16.43711 -15.97050 -15.85896 -15.47880 -15.31797 -15.15467 -15.05690 -14.45799 -14.04096 -13.78855 -13.56362 -13.41726 -13.34359 -13.22990 -13.11613 -12.90632 -12.89472 -12.87670 -12.65544 -12.56087 -12.46681 -12.24121 -12.07858 -12.05189 -11.88677 -11.81872 -11.58931 -11.40861 -11.22507 -10.99825 -10.85535 -10.44616 -9.85590 -8.95724 -7.91335 -5.16168 0.97219 1.50175 1.54674 1.62918 1.73130 2.15822 2.54386 2.74327 2.90396 3.31997 3.40242 3.64473 3.74259 3.78830 3.93537 4.00086 4.09408 4.24932 4.43991 4.49881 4.59274 4.59719 4.60429 4.63578 4.67796 4.74533 4.76688 4.80967 4.85420 4.86314 4.95137 5.04001 5.10877 5.18257 5.26253 5.28422 5.32026 5.35521 5.44345 5.49362 5.70804 5.76779 6.27365 6.28808 6.60978 7.10427 7.21768 7.71683 7.92439 8.24139 9.18681 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.017794 B = 0.002600 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.175416 B =10766.403605 C =11762.255695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.120 3.880 3 C -0.134 4.134 4 C -0.179 4.179 5 O -0.368 6.368 6 C 0.664 3.336 7 O -0.599 6.599 8 N -0.638 5.638 9 C 0.132 3.868 10 C -0.099 4.099 11 C -0.109 4.109 12 C 0.142 3.858 13 N -0.584 5.584 14 C -0.246 4.246 15 H 0.084 0.916 16 C -0.054 4.054 17 N -0.931 5.931 18 Si 0.962 3.038 19 H -0.266 1.266 20 H -0.291 1.291 21 H -0.308 1.308 22 C 0.185 3.815 23 C 0.480 3.520 24 O -0.548 6.548 25 O -0.539 6.539 26 C 0.116 3.884 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.122 0.878 39 H 0.051 0.949 40 H 0.037 0.963 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.247 0.753 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.398 0.602 47 H 0.101 0.899 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.883 12.792 -9.986 19.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.084 3.916 3 C -0.191 4.191 4 C -0.236 4.236 5 O -0.283 6.283 6 C 0.421 3.579 7 O -0.491 6.491 8 N -0.380 5.380 9 C 0.011 3.989 10 C -0.119 4.119 11 C -0.149 4.149 12 C 0.017 3.983 13 N -0.304 5.304 14 C -0.375 4.375 15 H 0.102 0.898 16 C -0.248 4.248 17 N -0.579 5.579 18 Si 0.792 3.208 19 H -0.190 1.190 20 H -0.218 1.218 21 H -0.236 1.236 22 C 0.055 3.945 23 C 0.322 3.678 24 O -0.437 6.437 25 O -0.351 6.351 26 C -0.006 4.006 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.124 0.876 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.140 0.860 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.056 0.944 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.255 0.745 47 H 0.120 0.880 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.952 13.125 -10.454 20.038 hybrid contribution 1.383 -1.312 -0.464 1.962 sum -9.570 11.813 -10.918 18.717 Atomic orbital electron populations 1.22455 0.93758 1.03523 1.03718 1.22477 0.94852 0.92807 0.81443 1.21876 1.02286 0.90482 1.04465 1.22470 1.01431 1.02094 0.97652 1.86335 1.71435 1.23027 1.47484 1.17780 0.78871 0.80828 0.80390 1.90858 1.43431 1.71412 1.43433 1.49108 1.53276 1.14558 1.21097 1.23374 1.02629 0.82024 0.90852 1.23084 0.99985 0.95372 0.93446 1.21964 0.97625 0.98269 0.97057 1.21202 0.94316 0.93551 0.89186 1.44446 1.03708 1.31985 1.50275 1.19614 0.83385 1.03851 1.30698 0.89811 1.25359 1.01230 0.94762 1.03462 1.69981 1.38701 1.01451 1.47729 0.85282 0.79941 0.77987 0.77618 1.18999 1.21759 1.23636 1.20428 0.98026 0.82542 0.93465 1.25447 0.70375 0.85445 0.86582 1.90471 1.45460 1.85526 1.22200 1.84571 1.77578 1.22293 1.50631 1.23533 0.95537 1.00829 0.80660 0.91873 0.88792 0.92281 0.91502 0.87640 0.91119 0.92375 0.88674 0.92336 0.90080 0.89400 0.86049 0.93078 0.94438 0.91718 0.91117 0.94372 0.89305 0.89334 0.74468 0.88045 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.47 8.37 71.98 0.60 -2.86 16 2 C 0.12 2.48 1.13 -10.80 -0.01 2.47 16 3 C -0.13 -1.83 8.85 71.98 0.64 -1.19 16 4 C -0.18 -3.69 8.37 71.98 0.60 -3.08 16 5 O -0.37 -9.90 9.88 -55.51 -0.55 -10.44 16 6 C 0.66 20.35 8.22 129.79 1.07 21.41 16 7 O -0.60 -20.75 12.61 19.83 0.25 -20.50 16 8 N -0.64 -17.77 3.62 -966.18 -3.49 -21.26 16 9 C 0.13 3.45 8.40 86.49 0.73 4.18 16 10 C -0.10 -2.40 3.82 -10.14 -0.04 -2.44 16 11 C -0.11 -3.54 4.62 30.59 0.14 -3.40 16 12 C 0.14 4.76 5.71 86.38 0.49 5.25 16 13 N -0.58 -25.66 2.09 -706.34 -1.48 -27.14 16 14 C -0.25 -12.27 9.70 84.04 0.82 -11.45 16 15 H 0.08 4.06 7.93 -2.91 -0.02 4.04 16 16 C -0.05 -2.83 4.89 84.86 0.41 -2.41 16 17 N -0.93 -51.45 9.02 21.65 0.20 -51.26 16 18 Si 0.96 43.19 29.62 68.60 2.03 45.22 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.31 -14.47 7.11 99.48 0.71 -13.76 16 22 C 0.18 7.94 5.58 85.64 0.48 8.41 16 23 C 0.48 21.64 6.33 71.24 0.45 22.09 16 24 O -0.55 -27.99 14.42 21.95 0.32 -27.68 16 25 O -0.54 -20.69 13.42 -51.37 -0.69 -21.38 16 26 C 0.12 2.76 8.45 86.41 0.73 3.49 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.52 5.88 -2.39 -0.01 1.51 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 1.56 5.88 -2.39 -0.01 1.55 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.08 2.25 8.10 -2.39 -0.02 2.23 16 37 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 38 H 0.12 2.47 8.14 -2.38 -0.02 2.45 16 39 H 0.05 1.91 6.30 -2.39 -0.02 1.89 16 40 H 0.04 1.45 7.88 -2.38 -0.02 1.43 16 41 H 0.06 2.02 8.03 -2.38 -0.02 2.00 16 42 H 0.07 1.97 7.90 -2.39 -0.02 1.95 16 43 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 44 H 0.09 4.29 6.29 -2.39 -0.02 4.27 16 45 H 0.09 3.07 7.90 -2.39 -0.02 3.05 16 46 H 0.40 12.08 9.10 -74.05 -0.67 11.41 16 47 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.08 2.13 7.92 -2.39 -0.02 2.11 16 Total: -1.00 -69.99 387.28 3.98 -66.01 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.29 Total: 27.96 kcal Atomic # 6 Polarization: 33.36 SS G_CDS: 7.11 Total: 40.47 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -4.78 Total: -99.66 kcal Atomic # 8 Polarization: -79.33 SS G_CDS: -0.67 Total: -80.00 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -69.99 3.98 -66.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603384020.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.902 kcal (2) G-P(sol) polarization free energy of solvation -69.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds