Wall clock time and date at job start Tue Mar 31 2020 14:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47364 * 2 1 4 4 C 1.52997 * 109.46854 * 239.99625 * 2 1 3 5 5 C 1.50703 * 109.47104 * 60.00447 * 4 2 1 6 6 H 1.08002 * 119.99934 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00357 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99560 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00219 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47428 * 0.02562 * 9 7 5 11 11 H 1.48510 * 109.47020 * 120.00379 * 9 7 5 12 12 H 1.48498 * 109.47547 * 240.00145 * 9 7 5 13 13 C 1.53004 * 109.46674 * 120.00072 * 2 1 3 14 14 N 1.46495 * 109.46868 * 299.99460 * 13 2 1 15 15 C 1.34778 * 119.99628 * 179.97438 * 14 13 2 16 16 O 1.21583 * 120.00236 * 5.08152 * 15 14 13 17 17 N 1.34780 * 119.99904 * 185.07541 * 15 14 13 18 18 C 1.46929 * 120.62823 * 174.94840 * 17 15 14 19 19 C 1.53195 * 108.77198 * 233.62785 * 18 17 15 20 20 H 1.08999 * 109.49923 * 185.38126 * 19 18 17 21 21 O 1.42904 * 109.49625 * 65.31346 * 19 18 17 22 22 C 1.53039 * 109.31430 * 305.36381 * 19 18 17 23 23 C 1.53049 * 109.53611 * 61.36459 * 22 19 18 24 24 H 1.09004 * 109.52494 * 58.60545 * 23 22 19 25 25 C 1.50700 * 109.49815 * 178.68318 * 23 22 19 26 26 O 1.20827 * 119.99795 * 359.84103 * 25 23 22 27 27 O 1.34223 * 120.00313 * 180.11414 * 25 23 22 28 28 C 1.46921 * 120.63333 * 354.96443 * 17 15 14 29 29 H 1.09006 * 109.47132 * 300.00152 * 1 2 3 30 30 H 1.09005 * 109.47069 * 59.99945 * 1 2 3 31 31 H 1.08991 * 109.47502 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47129 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47072 * 300.00052 * 3 2 1 34 34 H 1.09006 * 109.47120 * 59.99841 * 3 2 1 35 35 H 1.09005 * 109.46975 * 180.02562 * 4 2 1 36 36 H 1.08994 * 109.47689 * 300.00255 * 4 2 1 37 37 H 0.96997 * 120.00242 * 179.97438 * 8 7 5 38 38 H 1.09005 * 109.46678 * 179.97438 * 13 2 1 39 39 H 1.08994 * 109.47219 * 60.00143 * 13 2 1 40 40 H 0.97001 * 120.00835 * 0.02562 * 14 13 2 41 41 H 1.08998 * 109.58965 * 353.41240 * 18 17 15 42 42 H 1.08994 * 109.59021 * 113.70274 * 18 17 15 43 43 H 0.96700 * 113.99829 * 60.00473 * 21 19 18 44 44 H 1.08994 * 109.46234 * 301.34598 * 22 19 18 45 45 H 1.09000 * 109.45903 * 181.38125 * 22 19 18 46 46 H 0.96703 * 117.00236 * 179.72840 * 27 25 23 47 47 H 1.09000 * 109.58403 * 6.58467 * 28 17 15 48 48 H 1.08998 * 109.59117 * 246.16170 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8711 -0.4817 -3.7320 8 7 2.6271 -1.5510 -3.8526 9 14 1.2479 0.3985 -5.2571 10 1 0.4226 1.5650 -4.8531 11 1 2.4027 0.8659 -6.0655 12 1 0.4236 -0.5353 -6.0656 13 6 2.0399 -0.7213 1.2493 14 7 1.5517 -0.0306 2.4454 15 6 1.8768 -0.4914 3.6695 16 8 2.6493 -1.4234 3.7829 17 7 1.3456 0.0811 4.7680 18 6 1.6025 -0.4783 6.1021 19 6 0.2612 -0.7266 6.7992 20 1 0.4386 -1.0516 7.8244 21 8 -0.4615 -1.7394 6.0962 22 6 -0.5528 0.5693 6.8071 23 6 -0.8305 1.0080 5.3674 24 1 -1.3717 0.2196 4.8443 25 6 -1.6595 2.2665 5.3761 26 8 -1.9965 2.7607 6.4259 27 8 -2.0280 2.8355 4.2176 28 6 0.4984 1.2760 4.6542 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9564 0.8900 35 1 3.1300 -0.7217 -1.2490 36 1 1.6766 -1.7489 -1.2492 37 1 2.8614 -1.8825 -4.7335 38 1 3.1300 -0.7217 1.2491 39 1 1.6766 -1.7489 1.2493 40 1 0.9938 0.7579 2.3564 41 1 2.1439 -1.4194 6.0058 42 1 2.1951 0.2261 6.6858 43 1 -0.0027 -2.5894 6.0496 44 1 0.0096 1.3482 7.3220 45 1 -1.4975 0.4017 7.3243 46 1 -2.5626 3.6394 4.2738 47 1 0.3114 1.4925 3.6024 48 1 0.9989 2.1246 5.1206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603591977.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:58 Heat of formation + Delta-G solvation = -178.396854 kcal Electronic energy + Delta-G solvation = -29686.473847 eV Core-core repulsion = 25548.168766 eV Total energy + Delta-G solvation = -4138.305081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.17778 -40.15674 -38.48147 -37.06963 -36.49645 -35.72612 -33.65005 -32.88356 -32.07489 -30.63712 -27.19178 -26.56483 -26.49909 -25.28074 -25.13678 -22.95257 -22.07902 -20.66090 -19.78555 -19.01510 -18.41336 -17.68161 -17.30356 -16.85629 -16.56284 -16.28449 -15.73739 -15.43623 -14.92625 -14.75150 -14.57349 -14.24981 -14.07677 -13.96317 -13.59221 -13.46268 -13.17269 -13.00184 -12.75890 -12.26752 -12.06851 -12.03586 -11.91031 -11.77185 -11.61646 -11.28943 -11.14339 -11.01883 -10.88633 -10.82846 -10.63733 -10.51857 -10.38885 -10.22782 -10.01743 -9.86919 -9.19933 -8.97881 -8.90915 -8.49806 -8.35599 -5.99516 -4.00599 1.78108 2.45073 2.74397 3.27843 3.30420 3.38631 3.40880 3.83277 3.94810 4.11088 4.34351 4.45027 4.47227 4.51769 4.77584 4.93000 5.01547 5.17862 5.25608 5.31450 5.36216 5.41939 5.52598 5.59918 5.65058 5.70508 5.76304 6.12290 6.15753 6.18966 6.25481 6.30686 6.42095 6.59508 6.64313 6.78267 6.89317 7.07527 7.08849 7.14723 7.33543 7.51089 7.65336 7.77453 7.99168 8.03375 8.41265 8.69005 9.04468 9.62542 11.12016 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.016798 B = 0.002947 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.426772 B = 9499.504962 C =10618.597033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.146 3.854 14 N -0.736 5.736 15 C 0.709 3.291 16 O -0.590 6.590 17 N -0.625 5.625 18 C 0.095 3.905 19 C 0.091 3.909 20 H 0.074 0.926 21 O -0.560 6.560 22 C -0.095 4.095 23 C -0.093 4.093 24 H 0.126 0.874 25 C 0.487 3.513 26 O -0.514 6.514 27 O -0.511 6.511 28 C 0.125 3.875 29 H 0.028 0.972 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.026 0.974 35 H 0.018 0.982 36 H 0.019 0.981 37 H 0.259 0.741 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.394 0.606 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.383 0.617 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.412 0.588 47 H 0.093 0.907 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.774 6.561 22.356 24.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.022 3.978 14 N -0.392 5.392 15 C 0.410 3.590 16 O -0.468 6.468 17 N -0.363 5.363 18 C -0.029 4.029 19 C 0.031 3.969 20 H 0.092 0.908 21 O -0.366 6.366 22 C -0.133 4.133 23 C -0.113 4.113 24 H 0.144 0.856 25 C 0.329 3.671 26 O -0.402 6.402 27 O -0.323 6.323 28 C 0.000 4.000 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.231 0.769 41 H 0.119 0.881 42 H 0.092 0.908 43 H 0.231 0.769 44 H 0.106 0.894 45 H 0.102 0.898 46 H 0.272 0.728 47 H 0.111 0.889 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.397 6.000 22.458 24.110 hybrid contribution -0.585 0.947 -0.875 1.415 sum -6.982 6.947 21.583 23.724 Atomic orbital electron populations 1.21753 0.95233 1.01172 1.00168 1.20921 0.95508 0.95854 0.95033 1.21752 1.00545 0.95916 1.00106 1.19087 0.96371 0.95235 0.89419 1.21223 1.31039 1.12054 0.90497 0.92195 1.25013 0.95337 0.95090 0.99085 1.69975 1.37038 1.23056 1.23314 0.86599 0.78594 0.79678 0.83475 1.19802 1.21169 1.21151 1.21518 0.98786 0.95582 0.81888 1.45561 1.55925 1.33214 1.04543 1.15833 0.80642 0.82072 0.80421 1.90902 1.38997 1.31445 1.85477 1.47016 1.53061 1.30370 1.05863 1.22235 0.96871 1.01269 0.82526 1.22201 0.90972 0.88774 0.94934 0.90795 1.86490 1.47961 1.23631 1.78534 1.21447 1.02031 0.95741 0.94069 1.21375 0.96186 0.93486 1.00239 0.85622 1.23325 0.77671 0.85080 0.81073 1.90726 1.53362 1.63149 1.32991 1.84564 1.67355 1.44609 1.35748 1.21460 0.88662 0.88255 1.01597 0.95332 0.91456 0.93342 0.93342 0.91422 0.95453 0.96316 0.96308 0.93110 0.91902 0.92006 0.76881 0.88090 0.90791 0.76903 0.89406 0.89845 0.72844 0.88916 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.07 -1.36 0.54 -154.51 -0.08 -1.45 16 3 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.40 7.65 -34.44 -0.26 -13.67 16 6 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.15 2.57 4.57 -4.04 -0.02 2.55 16 14 N -0.74 -10.75 4.87 -65.23 -0.32 -11.07 16 15 C 0.71 10.62 8.30 -86.91 -0.72 9.90 16 16 O -0.59 -11.02 15.78 5.29 0.08 -10.94 16 17 N -0.62 -6.81 2.91 -178.50 -0.52 -7.33 16 18 C 0.09 0.82 6.06 -3.71 -0.02 0.80 16 19 C 0.09 0.66 3.81 -26.61 -0.10 0.56 16 20 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 21 O -0.56 -5.02 12.51 -35.23 -0.44 -5.46 16 22 C -0.10 -0.72 4.21 -26.69 -0.11 -0.83 16 23 C -0.09 -0.78 2.64 -91.65 -0.24 -1.02 16 24 H 0.13 1.21 7.61 -51.93 -0.40 0.81 16 25 C 0.49 4.25 7.63 36.01 0.27 4.53 16 26 O -0.51 -5.74 16.74 -18.75 -0.31 -6.06 16 27 O -0.51 -3.58 13.36 -39.24 -0.52 -4.10 16 28 C 0.12 1.08 5.65 -3.71 -0.02 1.06 16 29 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 30 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 34 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.39 4.98 3.62 -40.82 -0.15 4.83 16 41 H 0.10 1.00 7.03 -51.93 -0.37 0.64 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.38 2.51 9.08 45.56 0.41 2.92 16 44 H 0.09 0.59 8.13 -51.93 -0.42 0.17 16 45 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 46 H 0.41 1.23 9.10 45.56 0.41 1.64 16 47 H 0.09 0.81 5.56 -51.93 -0.29 0.52 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 379.40 15.07 5.72 5.72 Total: -1.00 -34.60 379.40 -7.37 -41.97 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.85 Total: 5.89 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -0.92 Total: 0.87 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -0.10 Total: -43.93 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -1.20 Total: -26.55 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.60 -7.37 -41.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603591977.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.431 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds