Wall clock time and date at job start Tue Mar 31 2020 14:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46667 * 2 1 4 4 C 1.52996 * 109.47271 * 239.99933 * 2 1 3 5 5 C 1.50701 * 109.47334 * 59.99731 * 4 2 1 6 6 H 1.08003 * 119.99493 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00260 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99699 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00112 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47290 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46942 * 120.00241 * 9 7 5 12 12 H 1.48496 * 109.47146 * 239.99858 * 9 7 5 13 13 C 1.52998 * 109.47145 * 119.99518 * 2 1 3 14 14 N 1.46499 * 109.47097 * 300.00315 * 13 2 1 15 15 C 1.34785 * 120.00028 * 179.97438 * 14 13 2 16 16 O 1.21584 * 119.99548 * 4.98687 * 15 14 13 17 17 N 1.34776 * 119.99795 * 184.98258 * 15 14 13 18 18 C 1.46940 * 120.59887 * 174.79830 * 17 15 14 19 19 C 1.53195 * 108.76941 * 126.42272 * 18 17 15 20 20 H 1.08998 * 109.49532 * 294.61772 * 19 18 17 21 21 C 1.50699 * 109.49495 * 174.55404 * 19 18 17 22 22 O 1.20832 * 119.99589 * 240.06532 * 21 19 18 23 23 O 1.34225 * 120.00502 * 59.78466 * 21 19 18 24 24 C 1.53033 * 109.33821 * 54.58513 * 19 18 17 25 25 C 1.53042 * 109.53753 * 298.64760 * 24 19 18 26 26 H 1.09001 * 109.49878 * 301.41391 * 25 24 19 27 27 O 1.42909 * 109.49693 * 181.35199 * 25 24 19 28 28 C 1.46917 * 120.63276 * 354.77481 * 17 15 14 29 29 H 1.08996 * 109.47301 * 300.00098 * 1 2 3 30 30 H 1.09002 * 109.47201 * 60.00595 * 1 2 3 31 31 H 1.09000 * 109.46864 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46983 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46824 * 299.99635 * 3 2 1 34 34 H 1.08995 * 109.47621 * 59.99458 * 3 2 1 35 35 H 1.09004 * 109.47202 * 179.97438 * 4 2 1 36 36 H 1.09000 * 109.46941 * 299.99665 * 4 2 1 37 37 H 0.97000 * 120.00095 * 180.02562 * 8 7 5 38 38 H 1.08999 * 109.47117 * 180.02562 * 13 2 1 39 39 H 1.09000 * 109.47135 * 60.00293 * 13 2 1 40 40 H 0.97003 * 120.00340 * 359.97438 * 14 13 2 41 41 H 1.09001 * 109.61665 * 6.61969 * 18 17 15 42 42 H 1.08999 * 109.55635 * 246.18977 * 18 17 15 43 43 H 0.96697 * 117.00664 * 180.27546 * 23 21 19 44 44 H 1.09000 * 109.46408 * 58.67194 * 24 19 18 45 45 H 1.09006 * 109.46132 * 178.64285 * 24 19 18 46 46 H 0.96701 * 113.99694 * 180.02562 * 27 25 24 47 47 H 1.09000 * 109.58933 * 113.82616 * 28 17 15 48 48 H 1.08997 * 109.70505 * 353.46502 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9170 0.8674 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 2.6274 -1.5509 -3.8525 9 14 1.2479 0.3984 -5.2572 10 1 0.4225 1.5648 -4.8531 11 1 2.4027 0.8660 -6.0655 12 1 0.4238 -0.5356 -6.0656 13 6 2.0400 -0.7211 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8768 -0.4912 3.6696 16 8 2.6481 -1.4242 3.7828 17 7 1.3470 0.0825 4.7681 18 6 1.6016 -0.4791 6.1019 19 6 2.1517 0.6284 7.0062 20 1 3.1261 0.9487 6.6375 21 6 2.2930 0.1056 8.4125 22 8 1.6852 0.6297 9.3157 23 8 3.0895 -0.9458 8.6609 24 6 1.1866 1.8160 6.9972 25 6 1.0679 2.3684 5.5749 26 1 2.0524 2.6721 5.2192 27 8 0.1910 3.4968 5.5731 28 6 0.5047 1.2809 4.6545 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9563 -0.8900 34 1 1.6765 1.9565 0.8899 35 1 3.1301 -0.7208 -1.2494 36 1 1.6767 -1.7489 -1.2491 37 1 2.8624 -1.8819 -4.7335 38 1 3.1300 -0.7207 1.2495 39 1 1.6767 -1.7488 1.2493 40 1 0.9942 0.7584 2.3564 41 1 2.3313 -1.2853 6.0263 42 1 0.6711 -0.8635 6.5196 43 1 3.1450 -1.2478 9.5778 44 1 0.2058 1.4897 7.3431 45 1 1.5641 2.5957 7.6590 46 1 0.0686 3.8983 4.7019 47 1 -0.5152 1.0405 4.9545 48 1 0.5084 1.6364 3.6241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603591982.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:01 Heat of formation + Delta-G solvation = -179.394056 kcal Electronic energy + Delta-G solvation = -29156.068857 eV Core-core repulsion = 25017.720535 eV Total energy + Delta-G solvation = -4138.348323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.21213 -40.24516 -38.51522 -37.26714 -36.57137 -35.92446 -34.02422 -32.97043 -31.94984 -30.47657 -27.24724 -26.59930 -26.57569 -25.84708 -24.67625 -22.77635 -22.42946 -20.79239 -19.82797 -18.97380 -18.46509 -17.88417 -17.59416 -16.82845 -16.58568 -16.29675 -16.17309 -15.47844 -15.03507 -14.69518 -14.44938 -14.41115 -14.21382 -14.04237 -13.57132 -13.27003 -13.22238 -13.05774 -12.82668 -12.70837 -12.21688 -12.10408 -11.94767 -11.73663 -11.62828 -11.25553 -11.20503 -11.06944 -10.98679 -10.86868 -10.69751 -10.66643 -10.44937 -10.27959 -10.09272 -9.93119 -9.25731 -9.08423 -8.95665 -8.61717 -8.39240 -6.03048 -4.04493 1.71139 2.29894 2.68315 3.17945 3.27750 3.36119 3.37913 3.61392 3.90696 4.20935 4.26824 4.32384 4.42185 4.45078 4.65349 4.79209 5.01736 5.10180 5.25010 5.29540 5.32582 5.37544 5.46107 5.58300 5.59373 5.68351 5.71715 6.04809 6.07762 6.09827 6.17082 6.22397 6.34799 6.51804 6.57059 6.69493 6.80364 7.00709 7.02230 7.08234 7.16242 7.46067 7.60866 7.72656 7.93046 7.95950 8.36774 8.59872 9.00469 9.58871 11.08410 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.024560 B = 0.002437 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.769612 B =11487.149845 C =12319.951192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.145 3.855 14 N -0.735 5.735 15 C 0.706 3.294 16 O -0.584 6.584 17 N -0.630 5.630 18 C 0.140 3.860 19 C -0.094 4.094 20 H 0.118 0.882 21 C 0.491 3.509 22 O -0.511 6.511 23 O -0.510 6.510 24 C -0.098 4.098 25 C 0.095 3.905 26 H 0.066 0.934 27 O -0.558 6.558 28 C 0.078 3.922 29 H 0.026 0.974 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.025 0.975 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.260 0.740 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.393 0.607 41 H 0.113 0.887 42 H 0.072 0.928 43 H 0.413 0.587 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.384 0.616 47 H 0.080 0.920 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.221 6.843 22.350 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.021 3.979 14 N -0.392 5.392 15 C 0.407 3.593 16 O -0.461 6.461 17 N -0.370 5.370 18 C 0.016 3.984 19 C -0.115 4.115 20 H 0.136 0.864 21 C 0.333 3.667 22 O -0.398 6.398 23 O -0.321 6.321 24 C -0.136 4.136 25 C 0.035 3.965 26 H 0.084 0.916 27 O -0.364 6.364 28 C -0.046 4.046 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.230 0.770 41 H 0.131 0.869 42 H 0.090 0.910 43 H 0.272 0.728 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.232 0.768 47 H 0.099 0.901 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.806 6.159 22.724 23.710 hybrid contribution -0.476 0.768 -0.971 1.326 sum -3.281 6.926 21.753 23.064 Atomic orbital electron populations 1.21755 0.95293 1.01213 1.00071 1.20919 0.95448 0.95853 0.95056 1.21752 1.00619 0.95895 1.00019 1.19097 0.96432 0.95268 0.89389 1.21204 1.31161 1.12057 0.90483 0.92225 1.25016 0.95315 0.95083 0.99110 1.69973 1.36933 1.23030 1.23370 0.86595 0.78609 0.79659 0.83460 1.19822 1.21135 1.21129 1.21549 0.98898 0.95641 0.81778 1.45567 1.56076 1.33045 1.04508 1.15869 0.80591 0.82376 0.80456 1.90930 1.38574 1.31234 1.85380 1.47077 1.54058 1.30216 1.05617 1.21318 1.02011 0.94729 0.80311 1.21364 1.03207 0.97381 0.89534 0.86399 1.23041 0.75143 0.77056 0.91499 1.90749 1.44333 1.57606 1.47126 1.84566 1.63270 1.46669 1.37629 1.21316 1.00232 0.96155 0.95872 1.22038 0.93236 0.85734 0.95504 0.91630 1.86531 1.68534 1.45344 1.35946 1.22415 0.95537 0.85932 1.00740 0.95515 0.91389 0.93292 0.93277 0.91384 0.95593 0.96255 0.96263 0.93066 0.91770 0.91903 0.76978 0.86868 0.90966 0.72833 0.89784 0.89697 0.76772 0.90134 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.05 37.16 0.30 -1.79 16 2 C -0.07 -1.30 0.54 -154.51 -0.08 -1.38 16 3 C -0.13 -2.06 8.05 37.16 0.30 -1.77 16 4 C 0.04 0.85 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.18 7.65 -34.44 -0.26 -13.45 16 6 H 0.06 1.48 5.68 -52.48 -0.30 1.18 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 9 Si 0.89 20.80 29.54 -169.99 -5.02 15.77 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.14 2.45 4.57 -4.04 -0.02 2.43 16 14 N -0.74 -10.08 4.87 -65.23 -0.32 -10.40 16 15 C 0.71 10.16 8.29 -86.91 -0.72 9.44 16 16 O -0.58 -10.73 15.77 5.29 0.08 -10.65 16 17 N -0.63 -6.58 2.97 -178.49 -0.53 -7.11 16 18 C 0.14 1.30 5.65 -3.70 -0.02 1.28 16 19 C -0.09 -0.75 2.78 -91.65 -0.25 -1.00 16 20 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 21 C 0.49 4.16 7.63 36.01 0.27 4.43 16 22 O -0.51 -5.67 16.74 -18.76 -0.31 -5.99 16 23 O -0.51 -3.39 13.35 -39.24 -0.52 -3.91 16 24 C -0.10 -0.78 4.11 -26.69 -0.11 -0.89 16 25 C 0.10 0.69 3.62 -26.61 -0.10 0.59 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 O -0.56 -4.03 13.32 -35.23 -0.47 -4.50 16 28 C 0.08 0.60 6.01 -3.71 -0.02 0.57 16 29 H 0.03 0.35 6.86 -51.93 -0.36 -0.01 16 30 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.21 6.62 -51.93 -0.34 0.87 16 34 H 0.03 0.33 6.86 -51.93 -0.36 -0.02 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.39 4.45 3.65 -40.82 -0.15 4.30 16 41 H 0.11 1.24 7.00 -51.93 -0.36 0.88 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.41 0.98 9.10 45.56 0.41 1.40 16 44 H 0.08 0.73 8.13 -51.93 -0.42 0.31 16 45 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 46 H 0.38 1.27 9.08 45.56 0.41 1.68 16 47 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.08 0.57 5.65 -51.93 -0.29 0.27 16 LS Contribution 380.66 15.07 5.74 5.74 Total: -1.00 -34.44 380.66 -7.43 -41.86 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.88 Total: 3.79 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -0.93 Total: 0.63 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: -0.11 Total: -42.74 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -1.22 Total: -25.05 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.44 -7.43 -41.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603591982.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.532 kcal (2) G-P(sol) polarization free energy of solvation -34.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds