Wall clock time and date at job start Tue Mar 31 2020 14:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47118 * 2 1 4 4 C 1.52996 * 109.47002 * 239.99824 * 2 1 3 5 5 C 1.50698 * 109.47215 * 60.00441 * 4 2 1 6 6 H 1.08003 * 119.99791 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00057 * 180.02562 * 5 4 2 8 8 N 1.31507 * 120.00156 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99684 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46798 * 90.00161 * 9 7 5 11 11 H 1.48499 * 109.46934 * 209.99594 * 9 7 5 12 12 H 1.48494 * 109.47471 * 330.00005 * 9 7 5 13 13 C 1.53000 * 109.46864 * 119.99869 * 2 1 3 14 14 N 1.46495 * 109.47519 * 299.99916 * 13 2 1 15 15 C 1.34772 * 120.00246 * 179.72512 * 14 13 2 16 16 O 1.21581 * 120.00094 * 355.01071 * 15 14 13 17 17 N 1.34778 * 120.00163 * 175.00699 * 15 14 13 18 18 C 1.46931 * 120.62983 * 4.94418 * 17 15 14 19 19 C 1.53623 * 108.54138 * 126.36327 * 18 17 15 20 20 H 1.08996 * 109.66098 * 294.84604 * 19 18 17 21 21 O 1.42904 * 109.42892 * 174.72587 * 19 18 17 22 22 C 1.53035 * 109.24286 * 54.86049 * 19 18 17 23 23 C 1.53040 * 109.53630 * 298.50499 * 22 19 18 24 24 H 1.08997 * 109.52580 * 301.39895 * 23 22 19 25 25 C 1.50701 * 109.49888 * 181.31580 * 23 22 19 26 26 O 1.20820 * 119.99863 * 0.16572 * 25 23 22 27 27 O 1.34232 * 120.00080 * 180.16372 * 25 23 22 28 28 C 1.46923 * 120.63508 * 185.21703 * 17 15 14 29 29 H 1.09001 * 109.47614 * 300.00208 * 1 2 3 30 30 H 1.09001 * 109.47187 * 59.99924 * 1 2 3 31 31 H 1.08998 * 109.47808 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46606 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.46820 * 299.99485 * 3 2 1 34 34 H 1.09001 * 109.46782 * 59.99927 * 3 2 1 35 35 H 1.09002 * 109.46955 * 179.97438 * 4 2 1 36 36 H 1.08998 * 109.47511 * 299.99898 * 4 2 1 37 37 H 0.96999 * 120.00006 * 180.02562 * 8 7 5 38 38 H 1.09007 * 109.47212 * 179.97438 * 13 2 1 39 39 H 1.08998 * 109.47176 * 60.00391 * 13 2 1 40 40 H 0.97006 * 119.99410 * 359.97438 * 14 13 2 41 41 H 1.08998 * 109.58817 * 246.19836 * 18 17 15 42 42 H 1.09002 * 109.58571 * 6.62654 * 18 17 15 43 43 H 0.96702 * 114.00480 * 60.28588 * 21 19 18 44 44 H 1.09003 * 109.46186 * 178.49159 * 22 19 18 45 45 H 1.09001 * 109.45207 * 58.52094 * 22 19 18 46 46 H 0.96700 * 116.99942 * 180.02562 * 27 25 23 47 47 H 1.09007 * 109.58430 * 353.37935 * 28 17 15 48 48 H 1.09002 * 109.58532 * 113.65624 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8703 -0.4823 -3.7319 8 7 2.6263 -1.5516 -3.8526 9 14 1.2471 0.3980 -5.2571 10 1 2.2252 1.4395 -5.6619 11 1 1.0818 -0.5814 -6.3611 12 1 -0.0609 1.0356 -4.9610 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0307 2.4454 15 6 1.8726 -0.4943 3.6695 16 8 2.4903 -1.5354 3.7825 17 7 1.5088 0.1960 4.7684 18 6 0.6703 1.3972 4.6544 19 6 -0.5503 1.2298 5.5721 20 1 -1.1684 0.4067 5.2138 21 8 -1.3154 2.4367 5.5704 22 6 -0.0739 0.9291 6.9950 23 6 0.7179 -0.3805 7.0037 24 1 0.0885 -1.1891 6.6321 25 6 1.1590 -0.6924 8.4105 26 8 0.8674 0.0543 9.3146 27 8 1.8758 -1.7997 8.6593 28 6 1.9481 -0.2346 6.1026 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3635 -1.0276 0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 -0.7209 -1.2494 36 1 1.6766 -1.7489 -1.2492 37 1 2.8606 -1.8830 -4.7336 38 1 3.1299 -0.7217 1.2491 39 1 1.6766 -1.7489 1.2493 40 1 0.9942 0.7583 2.3564 41 1 1.2430 2.2730 4.9594 42 1 0.3397 1.5154 3.6224 43 1 -1.6502 2.6889 4.6989 44 1 -0.9366 0.8362 7.6548 45 1 0.5640 1.7414 7.3435 46 1 2.1354 -1.9576 9.5773 47 1 2.4611 -1.1934 6.0266 48 1 2.6250 0.5096 6.5223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603591985.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:07 Heat of formation + Delta-G solvation = -179.324073 kcal Electronic energy + Delta-G solvation = -29155.251249 eV Core-core repulsion = 25016.905961 eV Total energy + Delta-G solvation = -4138.345288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.20746 -40.24420 -38.50425 -37.26548 -36.57088 -35.92315 -34.02462 -32.97032 -31.95034 -30.45632 -27.24615 -26.59714 -26.57588 -25.84229 -24.67476 -22.77321 -22.43021 -20.78927 -19.82963 -18.97233 -18.46474 -17.88138 -17.58986 -16.82824 -16.58383 -16.29656 -16.17117 -15.47795 -15.03149 -14.69453 -14.44850 -14.40633 -14.21635 -14.03999 -13.56849 -13.27147 -13.22215 -13.05702 -12.82728 -12.70881 -12.21627 -12.09755 -11.94781 -11.73582 -11.62555 -11.25385 -11.20440 -11.05892 -10.98657 -10.88458 -10.68905 -10.66491 -10.44658 -10.29230 -10.09228 -9.92832 -9.25492 -9.08288 -8.96712 -8.61624 -8.38855 -6.02815 -4.04342 1.71338 2.29850 2.68549 3.18105 3.28590 3.35944 3.37143 3.61668 3.90741 4.21223 4.26467 4.31859 4.42262 4.45221 4.65469 4.79170 5.01756 5.10389 5.24929 5.29625 5.32707 5.37690 5.46135 5.58309 5.59385 5.68333 5.71817 6.04925 6.07787 6.09768 6.17105 6.22495 6.34808 6.51827 6.57070 6.69519 6.80478 7.00746 7.02232 7.08244 7.16493 7.46091 7.60755 7.72775 7.93112 7.96011 8.36872 8.59933 9.00371 9.58939 11.08601 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.024549 B = 0.002437 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.318981 B =11486.216390 C =12318.349128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.144 3.856 14 N -0.735 5.735 15 C 0.706 3.294 16 O -0.584 6.584 17 N -0.630 5.630 18 C 0.078 3.922 19 C 0.095 3.905 20 H 0.066 0.934 21 O -0.559 6.559 22 C -0.098 4.098 23 C -0.094 4.094 24 H 0.118 0.882 25 C 0.491 3.509 26 O -0.511 6.511 27 O -0.510 6.510 28 C 0.140 3.860 29 H 0.025 0.975 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.026 0.974 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.260 0.740 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.393 0.607 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.384 0.616 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.413 0.587 47 H 0.113 0.887 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.385 5.313 22.333 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.021 3.979 14 N -0.392 5.392 15 C 0.407 3.593 16 O -0.461 6.461 17 N -0.370 5.370 18 C -0.046 4.046 19 C 0.035 3.965 20 H 0.084 0.916 21 O -0.364 6.364 22 C -0.136 4.136 23 C -0.115 4.115 24 H 0.136 0.864 25 C 0.333 3.667 26 O -0.398 6.398 27 O -0.321 6.321 28 C 0.016 3.984 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.230 0.770 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.232 0.768 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.272 0.728 47 H 0.131 0.869 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.881 4.683 22.705 23.691 hybrid contribution -0.561 0.719 -0.967 1.329 sum -5.442 5.402 21.738 23.051 Atomic orbital electron populations 1.21750 0.95321 1.01191 1.00015 1.20919 0.95433 0.95868 0.95058 1.21756 1.00631 0.95877 1.00063 1.19089 0.96421 0.95263 0.89371 1.21166 1.31265 1.12067 0.90497 0.92283 1.25013 0.95326 0.95055 0.99094 1.69959 1.36911 1.22957 1.23478 0.86650 0.79161 0.79414 0.83080 1.20775 1.21336 1.19967 1.21548 0.98711 0.95837 0.81779 1.45562 1.55999 1.33125 1.04508 1.15864 0.79942 0.83031 0.80453 1.90929 1.46496 1.23311 1.85387 1.47084 1.55393 1.28953 1.05569 1.22517 0.92625 0.88733 1.00741 1.22127 0.91241 0.87632 0.95501 0.91590 1.86527 1.71567 1.42382 1.35908 1.21317 1.00858 0.95535 0.95872 1.21361 0.99858 1.00707 0.89527 0.86386 1.23041 0.74314 0.77856 0.91529 1.90746 1.53133 1.48814 1.47113 1.84569 1.66602 1.43451 1.37518 1.21309 0.93370 1.03372 0.80344 0.95605 0.91378 0.93282 0.93289 0.91396 0.95513 0.96277 0.96253 0.93006 0.91908 0.91770 0.76974 0.90096 0.89742 0.76770 0.89702 0.89788 0.72837 0.86898 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.05 37.15 0.30 -1.77 16 2 C -0.07 -1.30 0.54 -154.51 -0.08 -1.39 16 3 C -0.13 -2.09 8.05 37.16 0.30 -1.79 16 4 C 0.04 0.86 4.04 -27.89 -0.11 0.74 16 5 C -0.51 -13.21 7.65 -34.44 -0.26 -13.48 16 6 H 0.06 1.46 5.68 -52.48 -0.30 1.16 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 9 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 C 0.14 2.45 4.57 -4.04 -0.02 2.43 16 14 N -0.73 -10.08 4.87 -65.23 -0.32 -10.40 16 15 C 0.71 10.16 8.30 -86.92 -0.72 9.44 16 16 O -0.58 -10.74 15.77 5.29 0.08 -10.66 16 17 N -0.63 -6.58 2.97 -178.23 -0.53 -7.11 16 18 C 0.08 0.60 6.05 -3.48 -0.02 0.58 16 19 C 0.10 0.69 3.63 -26.39 -0.10 0.59 16 20 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 21 O -0.56 -4.03 13.32 -35.23 -0.47 -4.50 16 22 C -0.10 -0.78 4.11 -26.69 -0.11 -0.89 16 23 C -0.09 -0.75 2.78 -91.65 -0.25 -1.00 16 24 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 25 C 0.49 4.16 7.63 36.01 0.27 4.43 16 26 O -0.51 -5.67 16.74 -18.75 -0.31 -5.99 16 27 O -0.51 -3.39 13.35 -39.26 -0.52 -3.91 16 28 C 0.14 1.30 5.65 -3.71 -0.02 1.28 16 29 H 0.02 0.33 6.86 -51.93 -0.36 -0.02 16 30 H 0.07 1.22 6.62 -51.93 -0.34 0.87 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.22 6.62 -51.93 -0.34 0.87 16 34 H 0.03 0.35 6.86 -51.93 -0.36 -0.01 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.39 4.45 3.65 -40.82 -0.15 4.30 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.57 5.64 -51.93 -0.29 0.28 16 43 H 0.38 1.27 9.09 45.56 0.41 1.69 16 44 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 45 H 0.08 0.73 8.13 -51.93 -0.42 0.30 16 46 H 0.41 0.98 9.10 45.56 0.41 1.40 16 47 H 0.11 1.24 7.00 -51.92 -0.36 0.88 16 48 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 380.69 15.07 5.74 5.74 Total: -1.00 -34.42 380.69 -7.42 -41.84 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.88 Total: 3.83 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -0.93 Total: 0.63 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: -0.11 Total: -42.76 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -1.22 Total: -25.06 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.42 -7.42 -41.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603591985.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.482 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds