Wall clock time and date at job start Tue Mar 31 2020 15:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00221 * 2 1 4 4 C 1.52999 * 109.47428 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.99610 * 301.09529 * 4 3 2 6 6 O 1.20823 * 120.00278 * 23.90634 * 5 4 3 7 7 O 1.34236 * 119.99917 * 203.90405 * 5 4 3 8 8 C 1.54326 * 109.88175 * 62.18711 * 4 3 2 9 9 C 1.55158 * 102.93996 * 141.60982 * 8 4 3 10 10 C 1.55127 * 101.48598 * 324.33487 * 9 8 4 11 11 N 1.47016 * 109.88374 * 179.97438 * 4 3 2 12 12 C 1.34777 * 125.64858 * 61.60520 * 11 4 3 13 13 O 1.21284 * 119.99703 * 0.02562 * 12 11 4 14 14 C 1.50695 * 120.00295 * 179.97438 * 12 11 4 15 15 H 1.08998 * 109.47263 * 320.00186 * 14 12 11 16 16 N 1.46905 * 109.47077 * 199.99935 * 14 12 11 17 17 C 1.52997 * 109.46942 * 80.00247 * 14 12 11 18 18 C 1.53006 * 109.47127 * 185.00287 * 17 14 12 19 19 C 1.52997 * 109.47127 * 180.02562 * 18 17 14 20 20 C 1.50696 * 109.47055 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00290 * 0.02562 * 20 19 18 22 22 C 1.37887 * 120.00079 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99685 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00129 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47011 * 90.00204 * 24 22 20 26 26 H 1.48498 * 109.47112 * 210.00472 * 24 22 20 27 27 H 1.48499 * 109.47134 * 330.00583 * 24 22 20 28 28 H 1.08998 * 109.47412 * 300.00289 * 1 2 3 29 29 H 1.09000 * 109.46650 * 60.00440 * 1 2 3 30 30 H 1.08995 * 109.47142 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47189 * 59.99424 * 3 2 1 32 32 H 1.08998 * 109.46536 * 299.99550 * 3 2 1 33 33 H 0.96698 * 116.99692 * 180.02562 * 7 5 4 34 34 H 1.08996 * 110.72111 * 259.97724 * 8 4 3 35 35 H 1.09001 * 110.72116 * 23.07246 * 8 4 3 36 36 H 1.09000 * 110.99922 * 82.57559 * 9 8 4 37 37 H 1.08999 * 111.00223 * 206.38470 * 9 8 4 38 38 H 1.08999 * 110.49502 * 278.45126 * 10 9 8 39 39 H 1.09002 * 110.33832 * 156.05768 * 10 9 8 40 40 H 1.00896 * 111.00242 * 299.99811 * 16 14 12 41 41 H 1.00899 * 110.99949 * 63.95849 * 16 14 12 42 42 H 1.09001 * 109.47502 * 65.00444 * 17 14 12 43 43 H 1.09001 * 109.47289 * 305.00240 * 17 14 12 44 44 H 1.09001 * 109.47002 * 299.99574 * 18 17 14 45 45 H 1.08993 * 109.46955 * 60.00011 * 18 17 14 46 46 H 1.09001 * 109.47289 * 299.99953 * 19 18 17 47 47 H 1.09004 * 109.47261 * 59.99697 * 19 18 17 48 48 H 0.96999 * 119.99910 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9910 0.4151 1.2136 6 8 3.2355 -0.3528 1.7607 7 8 5.2361 0.5828 1.6862 8 6 4.0058 0.4680 -1.2827 9 6 5.3032 1.2341 -1.6529 10 6 4.9385 2.6815 -1.2306 11 7 4.1431 2.5234 0.0000 12 6 3.9931 3.4545 0.9628 13 8 3.3080 3.2167 1.9349 14 6 4.6776 4.7907 0.8321 15 1 5.6791 4.6477 0.4264 16 7 4.7707 5.4246 2.1541 17 6 3.8698 5.6877 -0.1079 18 6 4.6270 6.9970 -0.3393 19 6 3.8188 7.8943 -1.2788 20 6 4.5643 9.1840 -1.5062 21 1 5.5192 9.3473 -1.0288 22 6 4.0278 10.1554 -2.3247 23 7 2.8652 9.9564 -2.9064 24 14 4.9522 11.7538 -2.6072 25 1 5.8460 11.6074 -3.7840 26 1 3.9814 12.8497 -2.8562 27 1 5.7640 12.0751 -1.4060 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 5.4827 0.0671 2.4662 34 1 4.2215 -0.5813 -1.0814 35 1 3.2603 0.5623 -2.0723 36 1 6.1538 0.8599 -1.0833 37 1 5.4978 1.1781 -2.7239 38 1 4.3455 3.1673 -2.0055 39 1 5.8422 3.2560 -1.0272 40 1 3.8545 5.5680 2.5517 41 1 5.3535 4.8830 2.7746 42 1 2.8998 5.9033 0.3401 43 1 3.7249 5.1785 -1.0607 44 1 4.7718 7.5062 0.6135 45 1 5.5969 6.7814 -0.7873 46 1 3.6735 7.3853 -2.2316 47 1 2.8489 8.1098 -0.8304 48 1 2.4876 10.6398 -3.4819 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606829580.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:58 Heat of formation + Delta-G solvation = -175.888043 kcal Electronic energy + Delta-G solvation = -29826.141407 eV Core-core repulsion = 25687.945116 eV Total energy + Delta-G solvation = -4138.196291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.48015 -39.71134 -38.29469 -37.40033 -36.17838 -35.79419 -33.38536 -32.09594 -31.42227 -31.30528 -27.96923 -27.16200 -25.71949 -25.07514 -24.28702 -22.96876 -22.16679 -20.62500 -20.06194 -19.45408 -18.15721 -17.65600 -17.19149 -16.39890 -16.23521 -16.03781 -15.84478 -15.74240 -15.44797 -15.14273 -14.63710 -14.46552 -14.34315 -13.99907 -13.86047 -13.46388 -13.23641 -12.92524 -12.84260 -12.56863 -12.40815 -11.86749 -11.80107 -11.69634 -11.65880 -11.48219 -11.42038 -11.22681 -11.16060 -10.77373 -10.73886 -10.63146 -10.44177 -10.28175 -9.82426 -9.63321 -9.25703 -9.10421 -9.05729 -8.64805 -8.31242 -5.97060 -3.98592 1.91281 2.30596 2.58219 2.79521 3.33608 3.40048 3.44055 3.57155 3.95806 4.07928 4.42438 4.46441 4.50865 4.65859 4.72208 4.88064 4.95373 5.05739 5.07780 5.19049 5.23608 5.30862 5.32755 5.38000 5.39021 5.41880 5.43239 5.48213 5.51952 5.76218 5.84674 5.89970 6.08079 6.31405 6.39213 6.78331 6.86140 6.97721 7.01000 7.18958 7.22306 7.45977 7.72684 7.73453 7.87642 7.90016 8.04324 8.47708 9.09035 9.65292 11.14348 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.017661 B = 0.002748 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.994527 B =10185.304231 C =10510.469247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.372 6.372 3 C 0.066 3.934 4 C 0.181 3.819 5 C 0.484 3.516 6 O -0.489 6.489 7 O -0.511 6.511 8 C -0.111 4.111 9 C -0.134 4.134 10 C 0.096 3.904 11 N -0.601 5.601 12 C 0.503 3.497 13 O -0.542 6.542 14 C 0.085 3.915 15 H 0.103 0.897 16 N -0.809 5.809 17 C -0.104 4.104 18 C -0.099 4.099 19 C 0.020 3.980 20 C -0.516 4.516 21 H 0.055 0.945 22 C 0.055 3.945 23 N -0.897 5.897 24 Si 0.890 3.110 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.274 1.274 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.406 0.594 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.350 0.650 41 H 0.339 0.661 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.045 0.955 46 H 0.012 0.988 47 H 0.013 0.987 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.025 -22.946 3.563 23.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.290 6.290 3 C -0.012 4.012 4 C 0.093 3.907 5 C 0.323 3.677 6 O -0.373 6.373 7 O -0.322 6.322 8 C -0.149 4.149 9 C -0.172 4.172 10 C -0.026 4.026 11 N -0.339 5.339 12 C 0.291 3.709 13 O -0.418 6.418 14 C -0.031 4.031 15 H 0.121 0.879 16 N -0.338 5.338 17 C -0.142 4.142 18 C -0.137 4.137 19 C -0.017 4.017 20 C -0.555 4.555 21 H 0.073 0.927 22 C -0.146 4.146 23 N -0.537 5.537 24 Si 0.718 3.282 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.199 1.199 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.264 0.736 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.165 0.835 41 H 0.151 0.849 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.030 0.970 47 H 0.032 0.968 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.632 -22.437 3.496 22.860 hybrid contribution -0.177 -0.156 0.671 0.712 sum 2.454 -22.593 4.168 23.105 Atomic orbital electron populations 1.22730 0.80664 1.02776 1.00057 1.87918 1.19775 1.25856 1.95435 1.22624 0.89855 0.86288 1.02444 1.20734 0.93270 0.83918 0.92778 1.23317 0.79294 0.80461 0.84663 1.90751 1.54406 1.35205 1.56937 1.84544 1.32873 1.66677 1.48137 1.22661 0.98425 0.99800 0.94017 1.22923 0.97402 0.93970 1.02885 1.22591 0.96095 0.97983 0.85939 1.48726 1.49951 1.12604 1.22584 1.22581 0.80878 0.86572 0.80849 1.90699 1.40290 1.79950 1.30881 1.21778 1.00290 0.87273 0.93714 0.87888 1.59068 1.19698 1.51188 1.03806 1.21668 0.98891 0.97028 0.96625 1.21535 0.98034 0.93056 1.01040 1.19113 0.95209 0.93614 0.93770 1.21276 1.05363 1.01067 1.27770 0.92652 1.25030 0.94994 0.98540 0.95986 1.69966 1.17524 1.34545 1.31682 0.86620 0.79599 0.83421 0.78520 1.20741 1.21321 1.19850 0.94014 0.94043 0.89439 0.91317 0.91398 0.73607 0.89336 0.88487 0.89808 0.88686 0.89846 0.89100 0.83548 0.84884 0.91940 0.91833 0.91809 0.93602 0.96967 0.96824 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.37 -4.67 8.84 -56.39 -0.50 -5.17 16 3 C 0.07 0.82 4.54 37.16 0.17 0.99 16 4 C 0.18 2.06 0.61 -132.00 -0.08 1.98 16 5 C 0.48 6.27 6.14 36.00 0.22 6.49 16 6 O -0.49 -7.73 15.83 -25.82 -0.41 -8.14 16 7 O -0.51 -5.32 13.14 -39.27 -0.52 -5.83 16 8 C -0.11 -0.90 5.74 -24.89 -0.14 -1.04 16 9 C -0.13 -0.86 7.10 -24.46 -0.17 -1.03 16 10 C 0.10 0.80 6.22 -2.44 -0.02 0.78 16 11 N -0.60 -6.74 2.59 -156.97 -0.41 -7.15 16 12 C 0.50 6.83 6.65 -10.99 -0.07 6.76 16 13 O -0.54 -8.94 14.68 5.55 0.08 -8.86 16 14 C 0.09 1.13 2.56 -68.87 -0.18 0.95 16 15 H 0.10 1.22 6.92 -51.93 -0.36 0.86 16 16 N -0.81 -10.84 8.44 -5.65 -0.05 -10.89 16 17 C -0.10 -1.64 4.83 -26.73 -0.13 -1.77 16 18 C -0.10 -1.94 5.04 -26.73 -0.13 -2.07 16 19 C 0.02 0.50 4.97 -27.89 -0.14 0.36 16 20 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 21 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 22 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 23 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 24 Si 0.89 21.58 29.54 -169.99 -5.02 16.55 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.03 6.84 -51.93 -0.36 0.67 16 32 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 33 H 0.41 2.63 9.10 45.56 0.41 3.05 16 34 H 0.09 0.70 7.82 -51.93 -0.41 0.30 16 35 H 0.10 0.69 7.84 -51.93 -0.41 0.28 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.66 7.86 -51.93 -0.41 0.25 16 39 H 0.09 0.69 6.92 -51.93 -0.36 0.33 16 40 H 0.35 4.90 8.58 -39.29 -0.34 4.56 16 41 H 0.34 3.99 9.06 -39.29 -0.36 3.63 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 0.93 7.38 -51.93 -0.38 0.55 16 44 H 0.06 1.31 7.75 -51.93 -0.40 0.90 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 LS Contribution 391.17 15.07 5.89 5.89 Total: -1.00 -35.80 391.17 -7.29 -43.08 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -7.13 Total: 6.10 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 0.03 Total: 0.52 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.28 Total: -44.14 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -1.34 Total: -28.01 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.80 -7.29 -43.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606829580.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.805 kcal (2) G-P(sol) polarization free energy of solvation -35.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds