Wall clock time and date at job start Tue Mar 31 2020 16:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99625 * 2 1 4 4 C 1.53003 * 109.46994 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.99832 * 58.90301 * 4 3 2 6 6 O 1.20827 * 120.00174 * 266.09980 * 5 4 3 7 7 O 1.34232 * 119.99939 * 86.09480 * 5 4 3 8 8 C 1.54340 * 109.99115 * 297.87107 * 4 3 2 9 9 C 1.55161 * 103.01563 * 218.66524 * 8 4 3 10 10 C 1.54901 * 101.58446 * 35.30532 * 9 8 4 11 11 N 1.47021 * 109.88266 * 180.02562 * 4 3 2 12 12 C 1.34775 * 125.64722 * 298.39514 * 11 4 3 13 13 O 1.21283 * 120.00052 * 359.71761 * 12 11 4 14 14 C 1.50700 * 119.99951 * 179.71903 * 12 11 4 15 15 H 1.09000 * 109.47043 * 320.00058 * 14 12 11 16 16 N 1.46895 * 109.46963 * 199.99855 * 14 12 11 17 17 C 1.53004 * 109.47164 * 79.99664 * 14 12 11 18 18 C 1.53000 * 109.46988 * 184.99937 * 17 14 12 19 19 C 1.53004 * 109.46988 * 180.02562 * 18 17 14 20 20 C 1.50699 * 109.46843 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00516 * 359.97438 * 20 19 18 22 22 C 1.37884 * 119.99783 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99707 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99956 * 180.27458 * 22 20 19 25 25 H 1.48497 * 109.47172 * 179.72730 * 24 22 20 26 26 H 1.48506 * 109.47132 * 299.72429 * 24 22 20 27 27 H 1.48501 * 109.47173 * 59.72550 * 24 22 20 28 28 H 1.09005 * 109.47119 * 59.99901 * 1 2 3 29 29 H 1.08998 * 109.46983 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47530 * 300.00141 * 1 2 3 31 31 H 1.08997 * 109.46899 * 60.00091 * 3 2 1 32 32 H 1.08998 * 109.47118 * 299.99577 * 3 2 1 33 33 H 0.96693 * 117.00217 * 180.02562 * 7 5 4 34 34 H 1.08994 * 110.85074 * 100.19289 * 8 4 3 35 35 H 1.08999 * 110.66266 * 337.04226 * 8 4 3 36 36 H 1.08999 * 110.99931 * 277.22536 * 9 8 4 37 37 H 1.09001 * 110.99787 * 153.37965 * 9 8 4 38 38 H 1.08997 * 110.36765 * 204.15102 * 10 9 8 39 39 H 1.08997 * 110.37072 * 81.82549 * 10 9 8 40 40 H 1.00899 * 111.00382 * 299.99877 * 16 14 12 41 41 H 1.00900 * 111.00217 * 63.95906 * 16 14 12 42 42 H 1.08998 * 109.47202 * 65.00140 * 17 14 12 43 43 H 1.08997 * 109.46991 * 305.00360 * 17 14 12 44 44 H 1.09006 * 109.46826 * 60.00348 * 18 17 14 45 45 H 1.08997 * 109.47123 * 300.00283 * 18 17 14 46 46 H 1.09001 * 109.46361 * 60.00532 * 19 18 17 47 47 H 1.08997 * 109.46991 * 300.00423 * 19 18 17 48 48 H 0.97005 * 119.99656 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 3.9920 0.4148 -1.2117 6 8 4.1719 -0.7777 -1.1375 7 8 4.1987 1.0537 -2.3740 8 6 4.0074 0.4675 1.2831 9 6 5.3008 1.2379 1.6586 10 6 4.9374 2.6821 1.2324 11 7 4.1430 2.5236 0.0013 12 6 3.9937 3.4543 -0.9620 13 8 3.3132 3.2144 -1.9368 14 6 4.6725 4.7931 -0.8278 15 1 4.6103 5.1299 0.2070 16 7 4.0073 5.7690 -1.7013 17 6 6.1418 4.6630 -1.2344 18 6 6.8606 5.9896 -0.9803 19 6 8.3297 5.8597 -1.3875 20 6 9.0378 7.1661 -1.1367 21 1 8.4943 8.0052 -0.7282 22 6 10.3794 7.2904 -1.4297 23 7 11.0409 6.2690 -1.9285 24 14 11.2590 8.9073 -1.1117 25 1 12.6859 8.7798 -1.5024 26 1 10.6210 9.9836 -1.9117 27 1 11.1692 9.2441 0.3319 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 4.4907 0.5175 -3.1238 34 1 4.2274 -0.5810 1.0826 35 1 3.2610 0.5594 2.0721 36 1 6.1550 0.8666 1.0924 37 1 5.4909 1.1830 2.7305 38 1 5.8412 3.2566 1.0296 39 1 4.3438 3.1682 2.0066 40 1 4.0513 5.4793 -2.6668 41 1 3.0525 5.9210 -1.4125 42 1 6.2050 4.4125 -2.2933 43 1 6.6132 3.8758 -0.6461 44 1 6.7974 6.2400 0.0787 45 1 6.3891 6.7767 -1.5686 46 1 8.3924 5.6095 -2.4465 47 1 8.8014 5.0723 -0.7995 48 1 11.9846 6.3566 -2.1350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606829583.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:04 Heat of formation + Delta-G solvation = -174.557369 kcal Electronic energy + Delta-G solvation = -29906.791486 eV Core-core repulsion = 25768.652898 eV Total energy + Delta-G solvation = -4138.138588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.43923 -39.60230 -38.36550 -37.43293 -36.10496 -35.71578 -33.36002 -31.94196 -31.46874 -31.35526 -27.95126 -27.26115 -25.70847 -25.10899 -24.25111 -22.97011 -22.11653 -20.45552 -20.02480 -19.30796 -18.11475 -17.61703 -17.28417 -16.49876 -16.32445 -16.17455 -15.94709 -15.78105 -15.15535 -14.98456 -14.68847 -14.43251 -14.24128 -13.99804 -13.87243 -13.42564 -13.08476 -12.95707 -12.77321 -12.63157 -12.38738 -11.93920 -11.80248 -11.67059 -11.56472 -11.38098 -11.35834 -11.21649 -11.12053 -10.77743 -10.67588 -10.62972 -10.42402 -10.20310 -10.03108 -9.61051 -9.23379 -9.06517 -9.03003 -8.60487 -8.29596 -5.95382 -3.97128 2.00140 2.42262 2.53689 2.93378 3.36155 3.40424 3.43087 3.49528 3.92217 4.14408 4.46583 4.48899 4.54386 4.71461 4.74818 4.83063 4.90249 4.97066 5.00983 5.13658 5.15053 5.22776 5.29671 5.35471 5.38827 5.40388 5.43536 5.51122 5.67459 5.81834 5.85042 5.97554 6.12373 6.43374 6.46084 6.64906 6.80665 6.99821 7.04681 7.22732 7.27031 7.47783 7.74190 7.85674 7.89763 8.01233 8.06048 8.49136 9.10354 9.66581 11.15985 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.020965 B = 0.002726 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.260182 B =10270.413044 C =10581.137626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.060 3.940 4 C 0.181 3.819 5 C 0.485 3.515 6 O -0.509 6.509 7 O -0.485 6.485 8 C -0.114 4.114 9 C -0.137 4.137 10 C 0.091 3.909 11 N -0.608 5.608 12 C 0.499 3.501 13 O -0.515 6.515 14 C 0.084 3.916 15 H 0.100 0.900 16 N -0.810 5.810 17 C -0.103 4.103 18 C -0.099 4.099 19 C 0.020 3.980 20 C -0.517 4.517 21 H 0.055 0.945 22 C 0.055 3.945 23 N -0.897 5.897 24 Si 0.891 3.109 25 H -0.288 1.288 26 H -0.277 1.277 27 H -0.277 1.277 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.402 0.598 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.351 0.649 41 H 0.337 0.663 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.044 0.956 45 H 0.063 0.937 46 H 0.013 0.987 47 H 0.012 0.988 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.493 -12.246 7.807 25.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C -0.018 4.018 4 C 0.093 3.907 5 C 0.325 3.675 6 O -0.396 6.396 7 O -0.294 6.294 8 C -0.151 4.151 9 C -0.175 4.175 10 C -0.031 4.031 11 N -0.347 5.347 12 C 0.286 3.714 13 O -0.388 6.388 14 C -0.031 4.031 15 H 0.118 0.882 16 N -0.338 5.338 17 C -0.141 4.141 18 C -0.137 4.137 19 C -0.017 4.017 20 C -0.555 4.555 21 H 0.073 0.927 22 C -0.146 4.146 23 N -0.537 5.537 24 Si 0.719 3.281 25 H -0.214 1.214 26 H -0.203 1.203 27 H -0.203 1.203 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.259 0.741 34 H 0.123 0.877 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.166 0.834 41 H 0.149 0.851 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.032 0.968 47 H 0.030 0.970 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.116 -12.062 7.715 24.691 hybrid contribution -0.129 -0.179 -0.591 0.631 sum -20.245 -12.241 7.124 24.707 Atomic orbital electron populations 1.22774 0.80319 1.03065 1.00182 1.87920 1.20196 1.26458 1.95530 1.22764 0.90499 0.85902 1.02607 1.20631 0.93233 0.84269 0.92580 1.23337 0.73191 0.86321 0.84657 1.90686 1.47717 1.16226 1.84969 1.84831 1.78978 1.45122 1.20491 1.22727 0.97826 1.01204 0.93388 1.22893 0.97763 0.93864 1.02974 1.22583 0.96355 0.98396 0.85793 1.48788 1.50386 1.12806 1.22707 1.22475 0.81123 0.86759 0.80992 1.90695 1.39744 1.79179 1.29230 1.21749 0.96377 0.85318 0.99696 0.88218 1.59059 1.21629 1.45771 1.07361 1.21662 0.89908 1.00856 1.01690 1.21543 0.97865 0.94071 1.00226 1.19108 0.89238 0.96803 0.96527 1.21239 0.94304 0.98040 1.41957 0.92719 1.25032 0.97730 0.96408 0.95389 1.69960 1.09194 1.30264 1.44288 0.86679 0.78537 0.84248 0.78646 1.21400 1.20256 1.20285 0.93898 0.89215 0.93838 0.91479 0.90939 0.74050 0.87710 0.89045 0.90052 0.88657 0.88571 0.90506 0.83442 0.85067 0.91812 0.91966 0.93696 0.91820 0.96815 0.97009 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.26 10.03 -35.23 -0.35 -4.61 16 3 C 0.06 0.64 4.73 37.16 0.18 0.82 16 4 C 0.18 2.06 0.62 -131.98 -0.08 1.97 16 5 C 0.48 6.70 6.82 36.01 0.25 6.95 16 6 O -0.51 -7.94 16.36 -18.75 -0.31 -8.25 16 7 O -0.49 -6.55 10.08 -47.02 -0.47 -7.02 16 8 C -0.11 -1.03 5.70 -24.89 -0.14 -1.17 16 9 C -0.14 -1.08 7.09 -24.58 -0.17 -1.26 16 10 C 0.09 0.79 6.38 -2.56 -0.02 0.77 16 11 N -0.61 -6.78 2.81 -157.10 -0.44 -7.22 16 12 C 0.50 6.52 6.25 -10.99 -0.07 6.45 16 13 O -0.51 -7.84 12.78 -17.88 -0.23 -8.07 16 14 C 0.08 1.10 2.43 -68.87 -0.17 0.93 16 15 H 0.10 1.16 7.67 -51.93 -0.40 0.76 16 16 N -0.81 -10.48 8.44 -5.66 -0.05 -10.53 16 17 C -0.10 -1.66 4.70 -26.73 -0.13 -1.78 16 18 C -0.10 -1.97 5.04 -26.73 -0.13 -2.10 16 19 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 20 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 21 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 22 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 23 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 24 Si 0.89 21.72 29.54 -169.99 -5.02 16.69 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 32 H 0.07 0.90 6.85 -51.93 -0.36 0.54 16 33 H 0.40 3.88 9.10 45.56 0.41 4.29 16 34 H 0.10 1.10 6.79 -51.93 -0.35 0.75 16 35 H 0.09 0.66 7.84 -51.93 -0.41 0.25 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.90 6.05 -51.93 -0.31 0.59 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.35 4.77 8.58 -39.29 -0.34 4.43 16 41 H 0.34 3.71 9.06 -39.29 -0.36 3.35 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 0.96 6.59 -51.93 -0.34 0.62 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 1.31 7.75 -51.93 -0.40 0.91 16 46 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 386.85 15.07 5.83 5.83 Total: -1.00 -35.22 386.85 -7.28 -42.50 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -7.04 Total: 7.17 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 0.07 Total: -0.12 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.25 Total: -44.12 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -1.36 Total: -27.95 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.22 -7.28 -42.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606829583.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.062 kcal (2) G-P(sol) polarization free energy of solvation -35.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds