Wall clock time and date at job start Tue Mar 31 2020 15:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46891 * 111.00071 * 2 1 4 4 C 1.50706 * 109.47049 * 66.05170 * 3 2 1 5 5 H 1.07995 * 119.99965 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99874 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00404 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99825 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47094 * 60.00182 * 8 6 4 10 10 H 1.48495 * 109.47291 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46859 * 300.00109 * 8 6 4 12 12 C 1.46905 * 110.99713 * 236.04897 * 2 1 3 13 13 C 1.53000 * 109.47123 * 293.95674 * 12 2 1 14 14 H 1.09002 * 109.47398 * 59.99875 * 13 12 2 15 15 O 1.42903 * 109.46726 * 299.99631 * 13 12 2 16 16 C 1.53002 * 109.47233 * 180.02562 * 13 12 2 17 17 N 1.46896 * 109.47181 * 184.99855 * 16 13 12 18 18 C 1.46904 * 111.00016 * 179.97438 * 17 16 13 19 19 H 1.08998 * 109.46811 * 325.00156 * 18 17 16 20 20 C 1.50696 * 109.47120 * 204.99932 * 18 17 16 21 21 C 1.38236 * 119.99835 * 319.72295 * 20 18 17 22 22 C 1.38235 * 119.99350 * 179.81126 * 21 20 18 23 23 C 1.38231 * 120.00309 * 0.39818 * 22 21 20 24 24 C 1.38230 * 120.00191 * 359.85871 * 23 22 21 25 25 C 1.38236 * 119.99751 * 140.00347 * 20 18 17 26 26 C 1.53005 * 109.46972 * 84.99766 * 18 17 16 27 27 F 1.39899 * 109.46951 * 65.00163 * 26 18 17 28 28 F 1.39900 * 109.47124 * 185.00062 * 26 18 17 29 29 H 1.09002 * 109.47298 * 183.95531 * 1 2 3 30 30 H 1.09011 * 109.46893 * 303.94641 * 1 2 3 31 31 H 1.08994 * 109.47518 * 63.94659 * 1 2 3 32 32 H 1.09008 * 109.47131 * 186.04936 * 3 2 1 33 33 H 1.08997 * 109.47884 * 306.05210 * 3 2 1 34 34 H 0.96997 * 120.00581 * 179.97438 * 7 6 4 35 35 H 1.08992 * 109.47078 * 173.95361 * 12 2 1 36 36 H 1.09004 * 109.46829 * 53.95008 * 12 2 1 37 37 H 0.96700 * 114.00234 * 300.00043 * 15 13 12 38 38 H 1.09008 * 109.46873 * 304.99791 * 16 13 12 39 39 H 1.08997 * 109.47047 * 64.99480 * 16 13 12 40 40 H 1.00896 * 111.00229 * 56.04575 * 17 16 13 41 41 H 1.07995 * 119.99985 * 0.02562 * 21 20 18 42 42 H 1.08007 * 119.99700 * 180.23323 * 22 21 20 43 43 H 1.08005 * 120.00257 * 179.83103 * 23 22 21 44 44 H 1.08006 * 120.00586 * 179.97438 * 24 23 22 45 45 H 1.07995 * 120.00167 * 359.97438 * 25 20 18 46 46 H 1.09003 * 109.46931 * 305.00162 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.6370 2.0470 1.2986 5 1 1.0741 1.5114 2.0486 6 6 2.0278 3.3490 1.5290 7 7 2.7137 4.0012 0.6159 8 14 1.5829 4.1867 3.1383 9 1 2.1737 3.4291 4.2706 10 1 2.1152 5.5730 3.1384 11 1 0.1056 4.2242 3.2849 12 6 1.9954 -0.7660 -1.1377 13 6 1.6313 -2.2426 -0.9705 14 1 0.5470 -2.3475 -0.9325 15 8 2.2008 -2.7392 0.2424 16 6 2.1801 -3.0405 -2.1551 17 7 1.7296 -4.4352 -2.0568 18 6 2.2381 -5.2331 -3.1806 19 1 2.2707 -4.6163 -4.0787 20 6 1.3274 -6.4110 -3.4130 21 6 0.8013 -7.1008 -2.3367 22 6 -0.0372 -8.1789 -2.5500 23 6 -0.3430 -8.5723 -3.8394 24 6 0.1873 -7.8858 -4.9156 25 6 1.0227 -6.8053 -4.7024 26 6 3.6466 -5.7338 -2.8544 27 9 3.5883 -6.6163 -1.7704 28 9 4.1753 -6.3965 -3.9673 29 1 -0.3634 -1.0252 0.0709 30 1 -0.3633 0.5739 0.8526 31 1 -0.3634 0.4513 -0.9232 32 1 3.0798 1.3443 -0.1083 33 1 1.5611 1.9274 -0.8308 34 1 2.9883 4.9172 0.7779 35 1 3.0796 -0.6611 -1.1758 36 1 1.5609 -0.3872 -2.0628 37 1 3.1652 -2.6772 0.2784 38 1 1.8158 -2.6057 -3.0860 39 1 3.2695 -3.0086 -2.1411 40 1 0.7234 -4.4873 -2.0029 41 1 1.0426 -6.7953 -1.3294 42 1 -0.4513 -8.7156 -1.7091 43 1 -0.9960 -9.4163 -4.0060 44 1 -0.0513 -8.1933 -5.9231 45 1 1.4370 -6.2689 -5.5432 46 1 4.2834 -4.8867 -2.5995 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646517285.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:36 Heat of formation + Delta-G solvation = -118.372028 kcal Electronic energy + Delta-G solvation = -27962.436902 eV Core-core repulsion = 23715.647178 eV Total energy + Delta-G solvation = -4246.789725 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.05566 -47.02912 -39.76641 -38.33045 -36.43404 -35.23087 -32.54845 -32.07014 -31.18418 -29.64735 -28.16697 -27.06967 -25.81734 -24.13803 -23.28923 -22.65520 -21.41032 -20.98322 -20.17254 -18.01689 -17.52526 -17.12278 -16.60499 -16.50496 -16.18528 -15.82410 -15.45332 -15.26745 -14.95948 -14.54074 -14.30542 -14.14232 -13.95980 -13.69421 -13.60577 -13.41762 -13.37739 -13.16901 -12.96443 -12.78883 -12.45486 -12.05546 -11.89918 -11.79805 -11.36483 -11.31747 -11.18188 -11.02278 -10.90800 -10.78391 -10.67944 -10.33341 -10.00917 -9.63363 -9.19803 -9.17967 -9.07636 -8.85169 -8.44492 -7.23271 -6.03881 -4.04975 0.96366 1.13115 3.30095 3.33746 3.37369 3.40430 3.41693 3.79935 3.94172 4.24266 4.39440 4.47457 4.65606 4.70865 4.71750 4.74015 4.83445 4.90170 5.00434 5.08464 5.20307 5.23385 5.31455 5.33575 5.45912 5.50784 5.58465 5.62978 5.77445 6.00265 6.12838 6.14688 6.18870 6.23674 6.25378 6.34195 6.53850 6.69183 6.74091 6.90601 7.24097 7.29755 7.78477 8.00825 8.10676 8.17951 8.53167 9.02754 9.59294 11.07028 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.023477 B = 0.002172 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.375864 B =12887.306714 C =13282.530777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.528 5.528 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.024 3.976 13 C 0.119 3.881 14 H 0.093 0.907 15 O -0.534 6.534 16 C 0.020 3.980 17 N -0.664 5.664 18 C 0.082 3.918 19 H 0.080 0.920 20 C -0.106 4.106 21 C -0.084 4.084 22 C -0.124 4.124 23 C -0.113 4.113 24 C -0.126 4.126 25 C -0.101 4.101 26 C 0.276 3.724 27 F -0.191 7.191 28 F -0.206 7.206 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.007 0.993 32 H 0.028 0.972 33 H -0.011 1.011 34 H 0.262 0.738 35 H 0.070 0.930 36 H 0.027 0.973 37 H 0.369 0.631 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.357 0.643 41 H 0.137 0.863 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.611 -23.521 -12.541 26.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.252 5.252 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.106 4.106 13 C 0.058 3.942 14 H 0.111 0.889 15 O -0.337 6.337 16 C -0.110 4.110 17 N -0.297 5.297 18 C -0.030 4.030 19 H 0.098 0.902 20 C -0.107 4.107 21 C -0.102 4.102 22 C -0.142 4.142 23 C -0.131 4.131 24 C -0.144 4.144 25 C -0.120 4.120 26 C 0.221 3.779 27 F -0.173 7.173 28 F -0.188 7.188 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.026 0.974 32 H 0.046 0.954 33 H 0.006 0.994 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.045 0.955 37 H 0.215 0.785 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.178 0.822 41 H 0.155 0.845 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.482 -23.877 -11.563 26.645 hybrid contribution -0.341 1.373 -1.005 1.735 sum -2.823 -22.504 -12.568 25.930 Atomic orbital electron populations 1.22251 0.88988 0.99576 1.00386 1.62016 1.06832 1.17424 1.38946 1.19740 0.95256 0.81567 0.96630 1.21127 1.34778 0.96871 1.01682 0.91823 1.24996 0.95305 0.97357 0.97038 1.69943 1.38405 1.11518 1.34170 0.86541 0.78701 0.78269 0.83794 1.20085 1.21399 1.20292 1.22722 1.00603 0.93788 0.93488 1.21834 0.98261 0.90775 0.83328 0.88885 1.86608 1.24946 1.84837 1.37324 1.22949 1.01280 0.87671 0.99087 1.60261 1.17656 1.10327 1.41444 1.21396 0.92786 0.93987 0.94790 0.90233 1.19609 0.99572 0.97521 0.93966 1.21186 0.95208 0.94317 0.99469 1.21221 0.98552 0.97365 0.97106 1.21228 0.99496 0.99538 0.92868 1.21095 0.98110 0.96095 0.99082 1.21024 0.97708 0.97222 0.96007 1.21744 0.95407 0.87426 0.73316 1.92988 1.97256 1.71761 1.55257 1.92974 1.87738 1.83695 1.54386 0.93474 0.90645 0.97424 0.95370 0.99358 0.92891 0.91109 0.95505 0.78467 0.93838 0.90448 0.82225 0.84536 0.85784 0.86078 0.85973 0.86088 0.87301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.14 60.06 0.55 1.26 16 2 N -0.53 -11.12 4.62 -244.37 -1.13 -12.25 16 3 C 0.19 4.97 4.72 -4.98 -0.02 4.95 16 4 C -0.51 -14.21 8.46 -34.44 -0.29 -14.50 16 5 H 0.06 1.78 7.12 -52.49 -0.37 1.41 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.02 0.39 4.62 -3.82 -0.02 0.37 16 13 C 0.12 1.54 3.02 -26.73 -0.08 1.46 16 14 H 0.09 1.26 6.55 -51.93 -0.34 0.92 16 15 O -0.53 -7.92 13.15 -35.23 -0.46 -8.38 16 16 C 0.02 0.19 5.12 -3.83 -0.02 0.17 16 17 N -0.66 -6.17 5.64 -107.95 -0.61 -6.77 16 18 C 0.08 0.71 2.45 -68.86 -0.17 0.54 16 19 H 0.08 0.60 7.66 -51.93 -0.40 0.21 16 20 C -0.11 -0.99 4.46 -104.63 -0.47 -1.45 16 21 C -0.08 -0.80 8.13 -39.58 -0.32 -1.12 16 22 C -0.12 -1.06 10.05 -39.59 -0.40 -1.46 16 23 C -0.11 -0.88 10.05 -39.59 -0.40 -1.28 16 24 C -0.13 -0.99 10.05 -39.58 -0.40 -1.39 16 25 C -0.10 -0.87 9.67 -39.58 -0.38 -1.25 16 26 C 0.28 2.62 5.00 37.16 0.19 2.81 16 27 F -0.19 -2.26 16.04 2.25 0.04 -2.23 16 28 F -0.21 -2.20 17.16 2.25 0.04 -2.16 16 29 H 0.05 0.79 6.47 -51.93 -0.34 0.45 16 30 H 0.07 1.59 6.76 -51.92 -0.35 1.24 16 31 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.03 0.77 7.93 -51.92 -0.41 0.36 16 33 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.07 1.13 7.93 -51.93 -0.41 0.72 16 36 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 37 H 0.37 4.56 9.04 45.56 0.41 4.97 16 38 H 0.04 0.39 8.06 -51.92 -0.42 -0.03 16 39 H 0.08 0.68 7.36 -51.93 -0.38 0.29 16 40 H 0.36 3.30 8.00 -39.29 -0.31 2.99 16 41 H 0.14 1.37 7.58 -52.49 -0.40 0.98 16 42 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 43 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 44 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 45 H 0.12 0.87 8.04 -52.49 -0.42 0.44 16 46 H 0.11 0.83 7.35 -51.93 -0.38 0.45 16 LS Contribution 383.85 15.07 5.78 5.78 Total: -1.00 -32.03 383.85 -9.15 -41.18 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.20 Total: 3.55 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -2.33 Total: -9.47 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -1.00 Total: -44.94 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.46 Total: -8.38 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.07 Total: -4.39 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.03 -9.15 -41.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646517285.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.188 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds