Wall clock time and date at job start Tue Mar 31 2020 15:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45202 * 109.47243 * 2 1 4 4 C 1.34229 * 116.99958 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99929 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99809 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.52172 * 299.99425 * 6 4 3 8 8 N 1.46502 * 109.47224 * 60.00020 * 7 6 4 9 9 C 1.34771 * 120.00050 * 179.97438 * 8 7 6 10 10 O 1.21583 * 120.00038 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99983 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99741 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46590 * 179.97438 * 12 11 9 14 14 C 1.50702 * 109.47051 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99579 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00536 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99439 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00346 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47074 * 89.99920 * 18 16 14 20 20 H 1.48498 * 109.46935 * 209.99732 * 18 16 14 21 21 H 1.48498 * 109.47003 * 329.99772 * 18 16 14 22 22 C 1.53178 * 109.52021 * 179.87120 * 6 4 3 23 23 C 1.53175 * 109.03639 * 183.11419 * 22 6 4 24 24 C 1.53094 * 109.16617 * 56.97750 * 23 22 6 25 25 O 1.42906 * 109.41304 * 302.39543 * 24 23 22 26 26 C 1.42904 * 114.15441 * 61.12152 * 25 24 23 27 27 H 1.09001 * 109.47002 * 60.00200 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00466 * 1 2 3 30 30 H 1.09001 * 109.46998 * 119.99242 * 2 1 3 31 31 H 1.09000 * 109.47050 * 239.99534 * 2 1 3 32 32 H 1.08997 * 109.46988 * 180.02562 * 7 6 4 33 33 H 1.09005 * 109.47016 * 300.00328 * 7 6 4 34 34 H 0.96997 * 119.99497 * 0.02562 * 8 7 6 35 35 H 0.97002 * 120.00048 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.47165 * 299.99434 * 12 11 9 37 37 H 1.08994 * 109.47381 * 60.00365 * 12 11 9 38 38 H 1.08996 * 109.47659 * 299.99826 * 13 12 11 39 39 H 1.09001 * 109.47387 * 59.99747 * 13 12 11 40 40 H 0.96994 * 119.99762 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.54012 * 302.97669 * 22 6 4 42 42 H 1.08997 * 109.54575 * 63.15561 * 22 6 4 43 43 H 1.08995 * 109.52368 * 176.88816 * 23 22 6 44 44 H 1.09006 * 109.52302 * 297.00948 * 23 22 6 45 45 H 1.08997 * 109.47878 * 62.37562 * 24 23 22 46 46 H 1.08990 * 109.48384 * 182.41079 * 24 23 22 47 47 H 1.09008 * 109.53750 * 178.92574 * 26 25 24 48 48 H 1.09003 * 109.43045 * 58.89322 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 6 3.4496 3.6850 -1.2501 8 7 1.9866 3.7623 -1.2502 9 6 1.3446 4.3815 -2.2605 10 8 1.9795 4.8755 -3.1721 11 7 -0.0013 4.4531 -2.2602 12 6 -0.6992 5.1256 -3.3588 13 6 -2.2087 5.0653 -3.1166 14 6 -2.9267 5.7577 -4.2463 15 1 -2.3627 6.1972 -5.0558 16 6 -4.3036 5.8311 -4.2461 17 7 -4.9903 5.2963 -3.2601 18 14 -5.1936 6.6886 -5.6467 19 1 -5.4940 5.7052 -6.7181 20 1 -6.4616 7.2742 -5.1425 21 1 -4.3325 7.7682 -6.1929 22 6 5.4506 2.8585 0.0016 23 6 6.0238 4.2768 0.0796 24 6 5.4757 4.9725 1.3283 25 8 4.0476 4.9843 1.2772 26 6 3.4527 3.6853 1.2499 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5137 0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 3.8670 4.6919 -1.2500 33 1 3.7853 3.1530 -2.1403 34 1 1.4802 3.3685 -0.5226 35 1 -0.5078 4.0586 -1.5330 36 1 -0.3802 6.1667 -3.4086 37 1 -0.4622 4.6275 -4.2988 38 1 -2.5275 4.0242 -3.0670 39 1 -2.4461 5.5631 -2.1764 40 1 -5.9589 5.3475 -3.2601 41 1 5.7844 2.2824 0.8646 42 1 5.7924 2.3755 -0.9138 43 1 7.1111 4.2276 0.1377 44 1 5.7316 4.8372 -0.8086 45 1 5.8031 4.4341 2.2176 46 1 5.8465 5.9967 1.3662 47 1 2.3670 3.7818 1.2307 48 1 3.7527 3.1303 2.1388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001681526691.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:49 Heat of formation + Delta-G solvation = -178.234252 kcal Electronic energy + Delta-G solvation = -29408.700402 eV Core-core repulsion = 25270.402372 eV Total energy + Delta-G solvation = -4138.298030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.57229 -39.71225 -39.18728 -37.03397 -35.67543 -34.64324 -33.59172 -32.77578 -32.14837 -31.42884 -29.46567 -26.57456 -25.77424 -25.02741 -24.22867 -23.24118 -21.79720 -21.02218 -20.47908 -19.68467 -18.26401 -17.89427 -17.17833 -16.98902 -16.37165 -16.24505 -16.12304 -15.81161 -15.15930 -14.79698 -14.63560 -14.48840 -14.22889 -14.02836 -13.68977 -13.52098 -13.32195 -13.25694 -13.01852 -12.96560 -12.60680 -12.25149 -12.21773 -11.90220 -11.78573 -11.50980 -11.45990 -11.14789 -11.00624 -10.95354 -10.82712 -10.60584 -10.57700 -10.26899 -9.94136 -9.87280 -9.51621 -9.22549 -8.94635 -8.44699 -8.17749 -6.06469 -4.08635 1.78808 2.20300 3.03962 3.31641 3.37722 3.42442 3.45134 3.67697 3.96256 4.13797 4.21010 4.37504 4.42984 4.55115 4.58442 4.67373 4.69256 4.82674 4.90829 4.99498 5.01148 5.18860 5.26423 5.30741 5.31663 5.41235 5.49929 5.52660 5.56100 5.56837 5.67269 5.80268 5.84774 6.12419 6.35265 6.45517 6.62617 6.73586 6.83157 7.07486 7.27534 7.39042 7.61643 7.67862 7.93328 8.30116 8.51030 8.96605 9.07549 9.55868 11.05234 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015018 B = 0.002774 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.987766 B =10089.712503 C =11227.790789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.064 3.936 3 O -0.353 6.353 4 C 0.476 3.524 5 O -0.501 6.501 6 C -0.098 4.098 7 C 0.158 3.842 8 N -0.749 5.749 9 C 0.702 3.298 10 O -0.600 6.600 11 N -0.737 5.737 12 C 0.141 3.859 13 C 0.013 3.987 14 C -0.519 4.519 15 H 0.059 0.941 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.098 4.098 23 C -0.160 4.160 24 C 0.054 3.946 25 O -0.363 6.363 26 C 0.077 3.923 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.398 0.602 35 H 0.393 0.607 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.021 0.979 39 H 0.022 0.978 40 H 0.261 0.739 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.053 0.947 46 H 0.100 0.900 47 H 0.108 0.892 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.886 -8.987 13.914 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.009 4.009 3 O -0.270 6.270 4 C 0.318 3.682 5 O -0.388 6.388 6 C -0.100 4.100 7 C 0.033 3.967 8 N -0.409 5.409 9 C 0.401 3.599 10 O -0.479 6.479 11 N -0.391 5.391 12 C 0.018 3.982 13 C -0.024 4.024 14 C -0.558 4.558 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.136 4.136 23 C -0.198 4.198 24 C -0.023 4.023 25 O -0.281 6.281 26 C -0.001 4.001 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.235 0.765 35 H 0.226 0.774 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.071 0.929 46 H 0.118 0.882 47 H 0.126 0.874 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.348 -8.689 13.102 25.714 hybrid contribution -0.866 -0.544 -0.074 1.026 sum 19.482 -9.233 13.028 25.190 Atomic orbital electron populations 1.21854 0.91947 1.03349 1.04211 1.23109 0.95832 0.79441 1.02516 1.86425 1.23954 1.33158 1.83481 1.23283 0.80935 0.91693 0.72270 1.90666 1.60474 1.42698 1.44951 1.21627 0.98193 0.89939 1.00272 1.21019 0.80673 1.00995 0.94002 1.45152 1.06269 1.62842 1.26618 1.15978 0.82477 0.79216 0.82188 1.90882 1.66381 1.53221 1.37412 1.45489 1.04070 1.61477 1.28043 1.21575 0.94142 0.95477 0.87015 1.19319 0.87330 0.97826 0.97943 1.21066 0.91430 1.36187 1.07135 0.92240 1.24992 0.97636 0.95560 0.96123 1.69959 1.06843 1.45072 1.31514 0.86518 0.79066 0.79846 0.82162 1.20614 1.21213 1.19711 1.21493 0.89724 0.97778 1.04641 1.22318 1.01483 0.95663 1.00308 1.22707 0.81010 1.02013 0.96552 1.88070 1.19604 1.26059 1.94357 1.22539 0.99430 0.84579 0.93502 0.90793 0.90077 0.91193 0.91225 0.91124 0.89170 0.91359 0.76530 0.77438 0.92783 0.92894 0.96024 0.95944 0.92915 0.90200 0.89883 0.89804 0.89901 0.92885 0.88189 0.87441 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 10.29 37.16 0.38 -0.79 16 2 C 0.06 0.56 6.19 37.16 0.23 0.79 16 3 O -0.35 -3.55 7.77 -39.26 -0.30 -3.86 16 4 C 0.48 5.10 6.55 36.01 0.24 5.33 16 5 O -0.50 -6.35 15.72 -18.75 -0.29 -6.64 16 6 C -0.10 -0.92 0.50 -155.52 -0.08 -1.00 16 7 C 0.16 1.88 4.15 -4.04 -0.02 1.86 16 8 N -0.75 -10.07 4.75 -65.22 -0.31 -10.38 16 9 C 0.70 12.64 8.57 -86.92 -0.74 11.90 16 10 O -0.60 -13.15 16.34 5.29 0.09 -13.07 16 11 N -0.74 -13.33 5.56 -65.23 -0.36 -13.70 16 12 C 0.14 3.07 5.61 -4.04 -0.02 3.05 16 13 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 14 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 15 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 18 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.10 -0.77 4.12 -26.55 -0.11 -0.88 16 23 C -0.16 -1.05 5.77 -26.59 -0.15 -1.20 16 24 C 0.05 0.37 6.85 37.21 0.25 0.62 16 25 O -0.36 -3.52 10.19 -35.23 -0.36 -3.88 16 26 C 0.08 0.66 5.33 37.20 0.20 0.86 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.55 8.13 -51.93 -0.42 0.12 16 31 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 32 H 0.09 1.13 6.14 -51.93 -0.32 0.81 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.40 4.57 5.36 -40.82 -0.22 4.35 16 35 H 0.39 6.14 8.49 -40.82 -0.35 5.79 16 36 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.08 0.60 8.03 -51.93 -0.42 0.18 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.63 6.63 -51.93 -0.34 0.28 16 45 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.11 0.92 6.81 -51.92 -0.35 0.56 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 387.68 15.07 5.84 5.84 Total: -1.00 -34.12 387.68 -8.24 -42.36 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -7.88 Total: 4.78 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -0.38 Total: 7.48 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: 0.06 Total: -49.46 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.87 Total: -27.44 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.12 -8.24 -42.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681526691.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.873 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds