Wall clock time and date at job start Tue Mar 31 2020 15:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45202 * 109.47243 * 2 1 4 4 C 1.34229 * 116.99958 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99929 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99809 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.52172 * 299.99425 * 6 4 3 8 8 N 1.46502 * 109.47224 * 60.00020 * 7 6 4 9 9 C 1.34771 * 120.00050 * 179.97438 * 8 7 6 10 10 O 1.21583 * 120.00038 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99983 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99741 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46590 * 179.97438 * 12 11 9 14 14 C 1.50702 * 109.47051 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99579 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00536 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99439 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00346 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47074 * 89.99920 * 18 16 14 20 20 H 1.48498 * 109.46935 * 209.99732 * 18 16 14 21 21 H 1.48498 * 109.47003 * 329.99772 * 18 16 14 22 22 C 1.53178 * 109.52021 * 179.87120 * 6 4 3 23 23 C 1.53175 * 109.03639 * 183.11419 * 22 6 4 24 24 C 1.53094 * 109.16617 * 56.97750 * 23 22 6 25 25 O 1.42906 * 109.41304 * 302.39543 * 24 23 22 26 26 C 1.42904 * 114.15441 * 61.12152 * 25 24 23 27 27 H 1.09001 * 109.47002 * 60.00200 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00466 * 1 2 3 30 30 H 1.09001 * 109.46998 * 119.99242 * 2 1 3 31 31 H 1.09000 * 109.47050 * 239.99534 * 2 1 3 32 32 H 1.08997 * 109.46988 * 180.02562 * 7 6 4 33 33 H 1.09005 * 109.47016 * 300.00328 * 7 6 4 34 34 H 0.96997 * 119.99497 * 0.02562 * 8 7 6 35 35 H 0.97002 * 120.00048 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.47165 * 299.99434 * 12 11 9 37 37 H 1.08994 * 109.47381 * 60.00365 * 12 11 9 38 38 H 1.08996 * 109.47659 * 299.99826 * 13 12 11 39 39 H 1.09001 * 109.47387 * 59.99747 * 13 12 11 40 40 H 0.96994 * 119.99762 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.54012 * 302.97669 * 22 6 4 42 42 H 1.08997 * 109.54575 * 63.15561 * 22 6 4 43 43 H 1.08995 * 109.52368 * 176.88816 * 23 22 6 44 44 H 1.09006 * 109.52302 * 297.00948 * 23 22 6 45 45 H 1.08997 * 109.47878 * 62.37562 * 24 23 22 46 46 H 1.08990 * 109.48384 * 182.41079 * 24 23 22 47 47 H 1.09008 * 109.53750 * 178.92574 * 26 25 24 48 48 H 1.09003 * 109.43045 * 58.89322 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 6 3.4496 3.6850 -1.2501 8 7 1.9866 3.7623 -1.2502 9 6 1.3446 4.3815 -2.2605 10 8 1.9795 4.8755 -3.1721 11 7 -0.0013 4.4531 -2.2602 12 6 -0.6992 5.1256 -3.3588 13 6 -2.2087 5.0653 -3.1166 14 6 -2.9267 5.7577 -4.2463 15 1 -2.3627 6.1972 -5.0558 16 6 -4.3036 5.8311 -4.2461 17 7 -4.9903 5.2963 -3.2601 18 14 -5.1936 6.6886 -5.6467 19 1 -5.4940 5.7052 -6.7181 20 1 -6.4616 7.2742 -5.1425 21 1 -4.3325 7.7682 -6.1929 22 6 5.4506 2.8585 0.0016 23 6 6.0238 4.2768 0.0796 24 6 5.4757 4.9725 1.3283 25 8 4.0476 4.9843 1.2772 26 6 3.4527 3.6853 1.2499 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5137 0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 3.8670 4.6919 -1.2500 33 1 3.7853 3.1530 -2.1403 34 1 1.4802 3.3685 -0.5226 35 1 -0.5078 4.0586 -1.5330 36 1 -0.3802 6.1667 -3.4086 37 1 -0.4622 4.6275 -4.2988 38 1 -2.5275 4.0242 -3.0670 39 1 -2.4461 5.5631 -2.1764 40 1 -5.9589 5.3475 -3.2601 41 1 5.7844 2.2824 0.8646 42 1 5.7924 2.3755 -0.9138 43 1 7.1111 4.2276 0.1377 44 1 5.7316 4.8372 -0.8086 45 1 5.8031 4.4341 2.2176 46 1 5.8465 5.9967 1.3662 47 1 2.3670 3.7818 1.2307 48 1 3.7527 3.1303 2.1388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001681526691.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:48 Heat of formation + Delta-G solvation = -201.421522 kcal Electronic energy + Delta-G solvation = -29409.705878 eV Core-core repulsion = 25270.402372 eV Total energy + Delta-G solvation = -4139.303505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.41294 -40.87759 -40.19352 -37.86833 -36.89739 -36.21322 -34.83083 -34.40607 -32.95624 -32.20606 -31.25642 -27.73476 -26.41300 -26.36956 -25.49871 -23.93253 -22.89341 -22.50577 -21.94817 -20.52022 -19.44468 -18.79575 -18.42054 -17.99935 -17.90634 -17.22796 -16.89868 -16.78473 -16.48365 -16.41695 -15.86356 -15.53869 -15.23893 -15.11287 -15.00536 -14.61028 -14.38843 -14.23126 -14.14003 -13.86293 -13.62749 -13.52840 -13.18199 -12.97869 -12.91485 -12.64529 -12.50666 -12.50086 -12.21435 -12.14162 -12.08687 -11.69146 -11.64560 -11.56767 -11.47366 -11.30040 -11.18734 -10.57863 -10.57086 -10.33029 -9.70166 -8.21478 -6.31225 0.92704 1.42866 1.43798 1.44006 1.55390 1.74393 2.19152 2.43277 2.82597 3.13380 3.15227 3.30630 3.44599 3.54717 3.67259 3.98037 4.00342 4.01342 4.04385 4.31606 4.32907 4.38725 4.46354 4.51187 4.56196 4.58774 4.66342 4.68484 4.79438 4.84880 4.90184 4.92819 4.97066 5.05434 5.14028 5.25062 5.33964 5.38777 5.44181 5.54769 5.63381 5.81791 6.03969 6.14227 6.20379 6.52151 6.81748 7.13236 7.37768 7.61174 8.90414 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015018 B = 0.002774 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.987766 B =10089.712503 C =11227.790789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.358 6.358 4 C 0.477 3.523 5 O -0.521 6.521 6 C -0.089 4.089 7 C 0.159 3.841 8 N -0.729 5.729 9 C 0.701 3.299 10 O -0.639 6.639 11 N -0.731 5.731 12 C 0.161 3.839 13 C 0.025 3.975 14 C -0.546 4.546 15 H 0.058 0.942 16 C 0.008 3.992 17 N -0.925 5.925 18 Si 0.964 3.036 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.267 1.267 22 C -0.097 4.097 23 C -0.155 4.155 24 C 0.048 3.952 25 O -0.385 6.385 26 C 0.077 3.923 27 H 0.057 0.943 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.410 0.590 35 H 0.406 0.594 36 H 0.043 0.957 37 H 0.042 0.958 38 H 0.009 0.991 39 H 0.009 0.991 40 H 0.265 0.735 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.110 0.890 47 H 0.105 0.895 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.446 -9.104 14.721 26.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.274 6.274 4 C 0.320 3.680 5 O -0.409 6.409 6 C -0.091 4.091 7 C 0.034 3.966 8 N -0.388 5.388 9 C 0.401 3.599 10 O -0.521 6.521 11 N -0.386 5.386 12 C 0.037 3.963 13 C -0.012 4.012 14 C -0.584 4.584 15 H 0.076 0.924 16 C -0.191 4.191 17 N -0.565 5.565 18 Si 0.788 3.212 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.191 1.191 22 C -0.135 4.135 23 C -0.192 4.192 24 C -0.028 4.028 25 O -0.303 6.303 26 C 0.000 4.000 27 H 0.076 0.924 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.249 0.751 35 H 0.241 0.759 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.125 0.875 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.128 0.872 47 H 0.123 0.877 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 20.917 -8.833 13.961 26.655 hybrid contribution -1.003 -0.555 -0.276 1.180 sum 19.914 -9.388 13.685 25.922 Atomic orbital electron populations 1.21860 0.91023 1.04357 1.03711 1.23269 0.96522 0.78793 1.02729 1.86417 1.23697 1.34111 1.83190 1.23504 0.80961 0.91889 0.71612 1.90657 1.60903 1.43392 1.45980 1.21611 0.99238 0.88889 0.99358 1.21082 0.79264 1.01132 0.95116 1.44994 1.07077 1.61280 1.25489 1.16064 0.82117 0.79186 0.82535 1.90855 1.67080 1.54974 1.39192 1.45180 1.04364 1.61406 1.27635 1.21074 0.92450 0.95091 0.87704 1.19115 0.89068 0.96461 0.96584 1.21468 0.92242 1.36736 1.07971 0.92375 1.25844 0.98433 0.96136 0.98661 1.70056 1.07303 1.45968 1.33183 0.85465 0.77835 0.78862 0.79012 1.19824 1.20513 1.19118 1.21529 0.88402 0.98776 1.04768 1.22301 1.02803 0.94427 0.99716 1.22915 0.79637 1.03025 0.97238 1.88043 1.21295 1.26535 1.94452 1.22582 0.99388 0.84475 0.93565 0.92353 0.88387 0.90517 0.90093 0.91859 0.89542 0.92420 0.75133 0.75881 0.93843 0.93932 0.97233 0.97239 0.92577 0.89255 0.90491 0.87543 0.91227 0.91151 0.87204 0.87680 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.29 71.98 0.74 -1.39 16 2 C 0.06 0.99 6.19 71.98 0.45 1.43 16 3 O -0.36 -6.84 7.77 -51.41 -0.40 -7.24 16 4 C 0.48 9.74 6.55 71.24 0.47 10.21 16 5 O -0.52 -12.70 15.72 21.96 0.35 -12.35 16 6 C -0.09 -1.57 0.50 -52.84 -0.03 -1.59 16 7 C 0.16 3.72 4.15 86.38 0.36 4.08 16 8 N -0.73 -19.30 4.75 -478.54 -2.27 -21.57 16 9 C 0.70 25.28 8.57 179.06 1.53 26.81 16 10 O -0.64 -28.32 16.34 -3.98 -0.07 -28.39 16 11 N -0.73 -26.49 5.56 -478.54 -2.66 -29.15 16 12 C 0.16 7.13 5.61 86.38 0.48 7.61 16 13 C 0.03 1.28 5.09 29.85 0.15 1.43 16 14 C -0.55 -30.65 9.11 25.60 0.23 -30.42 16 15 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 16 C 0.01 0.45 5.46 84.65 0.46 0.91 16 17 N -0.93 -54.08 13.29 21.45 0.28 -53.80 16 18 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 C -0.10 -1.38 4.12 30.71 0.13 -1.25 16 23 C -0.16 -1.76 5.77 30.68 0.18 -1.59 16 24 C 0.05 0.56 6.85 72.01 0.49 1.05 16 25 O -0.38 -6.86 10.19 -148.98 -1.52 -8.38 16 26 C 0.08 1.20 5.33 72.01 0.38 1.59 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.16 8.13 -2.39 -0.02 1.14 16 31 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 32 H 0.09 2.16 6.14 -2.39 -0.01 2.14 16 33 H 0.06 1.49 8.14 -2.38 -0.02 1.48 16 34 H 0.41 9.05 5.36 -92.71 -0.50 8.55 16 35 H 0.41 12.55 8.49 -92.71 -0.79 11.77 16 36 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 41 H 0.09 1.14 8.03 -2.38 -0.02 1.12 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.07 0.99 6.63 -2.38 -0.02 0.98 16 45 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.11 1.64 6.81 -2.38 -0.02 1.62 16 48 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -72.53 387.68 1.46 -71.07 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -0.31 Total: 25.16 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: 6.03 Total: 18.89 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -4.65 Total: -104.51 kcal Atomic # 8 Polarization: -54.73 SS G_CDS: -1.64 Total: -56.36 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -72.53 1.46 -71.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681526691.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.350 kcal (2) G-P(sol) polarization free energy of solvation -72.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds