Wall clock time and date at job start Tue Mar 31 2020 14:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.47093 * 120.00170 * 2 1 4 4 O 1.21619 * 119.99774 * 180.02562 * 3 2 1 5 5 N 1.34772 * 120.00335 * 0.02562 * 3 2 1 6 6 C 1.46503 * 120.00303 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47271 * 179.97438 * 6 5 3 8 8 H 1.09006 * 109.49160 * 305.06550 * 7 6 5 9 9 C 1.53622 * 109.45818 * 65.27096 * 7 6 5 10 10 N 1.46921 * 108.54436 * 174.74376 * 9 7 6 11 11 C 1.36930 * 120.63248 * 126.36635 * 10 9 7 12 12 H 1.07996 * 120.00454 * 332.05182 * 11 10 9 13 13 C 1.38819 * 119.99828 * 151.77351 * 11 10 9 14 14 N 1.31618 * 119.99931 * 343.03742 * 13 11 10 15 15 Si 1.86802 * 119.99862 * 163.03655 * 13 11 10 16 16 H 1.48499 * 109.46836 * 89.99852 * 15 13 11 17 17 H 1.48502 * 109.46828 * 210.00120 * 15 13 11 18 18 H 1.48497 * 109.47072 * 329.99925 * 15 13 11 19 19 C 1.46929 * 118.73654 * 306.09452 * 10 9 7 20 20 C 1.53191 * 108.77530 * 53.85646 * 19 10 9 21 21 C 1.53036 * 109.31885 * 305.36752 * 20 19 10 22 22 F 1.39894 * 109.46277 * 181.38278 * 21 20 19 23 23 F 1.39905 * 109.45910 * 301.35916 * 21 20 19 24 24 C 1.32996 * 119.99375 * 179.97438 * 2 1 3 25 25 C 1.51405 * 136.31154 * 179.62544 * 24 2 1 26 26 C 1.53378 * 87.51910 * 206.05919 * 25 24 2 27 27 C 1.51399 * 136.32341 * 359.97438 * 24 2 1 28 28 H 1.08996 * 109.47308 * 89.99612 * 1 2 3 29 29 H 1.08994 * 109.47364 * 210.00293 * 1 2 3 30 30 H 1.09007 * 109.46937 * 330.00081 * 1 2 3 31 31 H 0.96998 * 120.00104 * 359.97438 * 5 3 2 32 32 H 1.09005 * 109.46810 * 59.99834 * 6 5 3 33 33 H 1.09001 * 109.46983 * 299.99874 * 6 5 3 34 34 H 1.09000 * 109.74049 * 54.99994 * 9 7 6 35 35 H 1.09003 * 109.66507 * 294.43593 * 9 7 6 36 36 H 0.97002 * 120.00241 * 180.02562 * 14 13 11 37 37 H 1.08997 * 109.59053 * 173.65001 * 19 10 9 38 38 H 1.09001 * 109.58593 * 294.07167 * 19 10 9 39 39 H 1.09003 * 109.49691 * 65.31952 * 20 19 10 40 40 H 1.09006 * 109.49613 * 185.37838 * 20 19 10 41 41 H 1.09000 * 113.56300 * 320.64646 * 25 24 2 42 42 H 1.09006 * 113.56088 * 91.37347 * 25 24 2 43 43 H 1.08997 * 113.97071 * 220.29600 * 26 25 24 44 44 H 1.09003 * 113.59554 * 88.79848 * 26 25 24 45 45 H 1.08994 * 113.56104 * 268.63269 * 27 24 2 46 46 H 1.09011 * 113.55585 * 39.28559 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2738 0.0000 4 8 3.4587 1.2738 -0.0005 5 7 1.5687 2.4411 0.0005 6 6 2.3013 3.7098 0.0000 7 6 1.3071 4.8728 0.0001 8 1 0.6217 4.7655 -0.8407 9 6 0.5145 4.8684 1.3160 10 7 -0.3415 6.0620 1.3500 11 6 -1.6882 5.9487 1.5708 12 1 -2.2087 5.0473 1.2830 13 6 -2.3833 6.9904 2.1698 14 7 -1.7298 7.9287 2.8216 15 14 -4.2462 7.0604 2.0506 16 1 -4.8433 6.3316 3.1985 17 1 -4.6910 8.4770 2.0781 18 1 -4.6851 6.4283 0.7806 19 6 0.2758 7.3800 1.1485 20 6 1.0720 7.3567 -0.1600 21 6 2.0676 6.1949 -0.1263 22 9 2.8182 6.1898 -1.3068 23 9 2.9237 6.3464 0.9698 24 6 2.1718 -1.1519 0.0005 25 6 3.6249 -1.5773 -0.0061 26 6 3.1706 -2.8822 -0.6719 27 6 1.8137 -2.6229 0.0016 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5139 31 1 0.5988 2.4412 0.0005 32 1 2.9273 3.7674 -0.8906 33 1 2.9286 3.7675 0.8895 34 1 1.2032 4.8884 2.1607 35 1 -0.1049 3.9729 1.3682 36 1 -2.2155 8.6563 3.2405 37 1 -0.5010 8.1423 1.0901 38 1 0.9454 7.6007 1.9798 39 1 0.3888 7.2260 -0.9993 40 1 1.6125 8.2964 -0.2738 41 1 4.2565 -0.9606 -0.6456 42 1 4.0420 -1.7190 0.9910 43 1 3.6832 -3.7700 -0.3016 44 1 3.1397 -2.8291 -1.7602 45 1 1.7342 -3.0512 1.0008 46 1 0.9589 -2.8636 -0.6306 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699888563.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:14 Heat of formation + Delta-G solvation = -85.521069 kcal Electronic energy + Delta-G solvation = -28985.678871 eV Core-core repulsion = 24740.313671 eV Total energy + Delta-G solvation = -4245.365200 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.51884 -46.47147 -40.03831 -38.52375 -37.27284 -34.94944 -33.46330 -32.48860 -30.68886 -30.17703 -26.75120 -25.97599 -25.60550 -25.17408 -23.20053 -22.31956 -21.46122 -20.49734 -19.59815 -18.42708 -17.11572 -16.79953 -16.52817 -16.36038 -15.78191 -15.52375 -15.44375 -15.30071 -14.79105 -14.28515 -14.07342 -13.81087 -13.54752 -13.32680 -13.22854 -13.06925 -12.78991 -12.74385 -12.62095 -12.55480 -12.22182 -12.11890 -11.79788 -11.66190 -11.58439 -11.53357 -11.24583 -11.17498 -10.82707 -10.66700 -10.62414 -10.55289 -10.08265 -9.93567 -9.79881 -9.55696 -9.10489 -8.82710 -8.62547 -6.90972 -5.95185 -3.39821 1.26957 3.16501 3.28549 3.30829 3.36486 3.37593 4.15019 4.25398 4.32601 4.36870 4.51874 4.63314 4.69042 4.85047 4.87692 4.90712 5.11601 5.21080 5.27024 5.33960 5.41761 5.42462 5.47066 5.49262 5.55855 5.60881 5.65090 5.71434 5.88336 5.93068 5.99601 6.02034 6.14291 6.16715 6.26437 6.32844 6.43066 6.47468 6.54743 6.69499 7.09410 7.44042 7.60139 7.63755 8.25347 8.31202 9.01450 9.63961 10.19589 11.13895 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.013270 B = 0.003334 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.442326 B = 8395.255032 C =10090.140512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.162 4.162 3 C 0.556 3.444 4 O -0.544 6.544 5 N -0.719 5.719 6 C 0.126 3.874 7 C -0.156 4.156 8 H 0.102 0.898 9 C 0.153 3.847 10 N -0.590 5.590 11 C -0.262 4.262 12 H 0.069 0.931 13 C 0.007 3.993 14 N -0.899 5.899 15 Si 0.905 3.095 16 H -0.286 1.286 17 H -0.289 1.289 18 H -0.278 1.278 19 C 0.170 3.830 20 C -0.178 4.178 21 C 0.300 3.700 22 F -0.214 7.214 23 F -0.199 7.199 24 C -0.074 4.074 25 C -0.102 4.102 26 C -0.142 4.142 27 C -0.105 4.105 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.403 0.597 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.033 0.967 35 H 0.065 0.935 36 H 0.257 0.743 37 H 0.101 0.899 38 H 0.032 0.968 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.099 0.901 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.267 -15.253 -7.110 17.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.165 4.165 3 C 0.344 3.656 4 O -0.423 6.423 5 N -0.371 5.371 6 C 0.002 3.998 7 C -0.177 4.177 8 H 0.120 0.880 9 C 0.026 3.974 10 N -0.312 5.312 11 C -0.391 4.391 12 H 0.087 0.913 13 C -0.193 4.193 14 N -0.542 5.542 15 Si 0.734 3.266 16 H -0.212 1.212 17 H -0.215 1.215 18 H -0.203 1.203 19 C 0.044 3.956 20 C -0.218 4.218 21 C 0.264 3.736 22 F -0.195 7.195 23 F -0.180 7.180 24 C -0.076 4.076 25 C -0.139 4.139 26 C -0.179 4.179 27 C -0.142 4.142 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.239 0.761 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.119 0.881 38 H 0.050 0.950 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.117 0.883 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.077 -15.065 -7.003 17.690 hybrid contribution -1.248 0.275 -0.054 1.279 sum 4.830 -14.790 -7.058 17.085 Atomic orbital electron populations 1.20703 0.90361 1.03248 1.02522 1.20468 0.95924 0.91248 1.08857 1.18218 0.87182 0.83764 0.76424 1.90765 1.13526 1.87764 1.50210 1.45885 1.10662 1.05406 1.75195 1.21308 0.94091 0.81473 1.02960 1.23053 0.98039 0.91591 1.05032 0.88026 1.20995 0.93032 0.92104 0.91250 1.44107 1.04236 1.00106 1.82739 1.19141 0.82551 1.03240 1.34179 0.91319 1.25094 0.98336 0.99063 0.96787 1.70016 1.34747 1.14497 1.34968 0.86272 0.85210 0.77089 0.78028 1.21249 1.21457 1.20344 1.20843 0.95738 0.89478 0.89547 1.23269 0.97867 0.95493 1.05207 1.21026 0.83214 0.98499 0.70893 1.92954 1.79518 1.97723 1.49269 1.92967 1.73196 1.96912 1.54948 1.23201 0.98050 0.93641 0.92682 1.22165 0.94109 0.95789 1.01835 1.22717 0.96694 0.98190 1.00337 1.22283 0.98450 0.91701 1.01726 0.91069 0.91163 0.91138 0.76052 0.91106 0.90699 0.94896 0.91659 0.93311 0.88105 0.94968 0.89581 0.90551 0.89672 0.88605 0.90540 0.89846 0.88299 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.57 36.00 0.34 -0.67 16 2 C -0.16 -1.92 6.00 -102.85 -0.62 -2.54 16 3 C 0.56 8.26 7.75 -12.67 -0.10 8.17 16 4 O -0.54 -9.78 15.15 5.26 0.08 -9.70 16 5 N -0.72 -10.01 5.28 -61.49 -0.32 -10.33 16 6 C 0.13 1.97 4.83 -4.04 -0.02 1.95 16 7 C -0.16 -2.58 2.04 -90.27 -0.18 -2.77 16 8 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 9 C 0.15 2.96 5.42 -3.49 -0.02 2.94 16 10 N -0.59 -13.64 2.99 -172.06 -0.51 -14.15 16 11 C -0.26 -6.61 9.58 -15.06 -0.14 -6.76 16 12 H 0.07 1.67 7.89 -52.49 -0.41 1.25 16 13 C 0.01 0.17 4.92 -17.43 -0.09 0.09 16 14 N -0.90 -24.72 11.18 55.49 0.62 -24.10 16 15 Si 0.90 20.37 29.59 -169.99 -5.03 15.34 16 16 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 C 0.17 3.82 5.10 -3.71 -0.02 3.80 16 20 C -0.18 -3.27 5.62 -26.61 -0.15 -3.42 16 21 C 0.30 5.38 1.63 -26.69 -0.04 5.33 16 22 F -0.21 -3.74 16.40 2.25 0.04 -3.71 16 23 F -0.20 -3.87 15.72 2.25 0.04 -3.83 16 24 C -0.07 -0.80 6.60 -100.49 -0.66 -1.46 16 25 C -0.10 -1.06 6.99 -27.56 -0.19 -1.25 16 26 C -0.14 -1.08 8.17 -26.19 -0.21 -1.29 16 27 C -0.10 -0.80 7.71 -27.40 -0.21 -1.01 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.55 7.91 -51.93 -0.41 0.14 16 30 H 0.07 0.64 6.70 -51.92 -0.35 0.29 16 31 H 0.40 4.87 5.82 -40.82 -0.24 4.64 16 32 H 0.07 1.15 7.63 -51.93 -0.40 0.75 16 33 H 0.07 1.28 7.97 -51.93 -0.41 0.86 16 34 H 0.03 0.68 7.92 -51.93 -0.41 0.27 16 35 H 0.06 1.16 7.16 -51.93 -0.37 0.79 16 36 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 37 H 0.10 2.50 6.04 -51.93 -0.31 2.18 16 38 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 39 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.08 1.04 7.49 -51.93 -0.39 0.65 16 42 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 LS Contribution 371.61 15.07 5.60 5.60 Total: -1.00 -29.83 371.61 -8.87 -38.69 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.06 Total: 5.10 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -2.32 Total: 1.09 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.22 Total: -48.58 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 9 Polarization: -7.61 SS G_CDS: 0.07 Total: -7.54 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.83 -8.87 -38.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699888563.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.827 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds