Wall clock time and date at job start Tue Mar 31 2020 16:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 119.99633 * 2 1 4 4 H 1.48501 * 109.46855 * 240.00290 * 3 2 1 5 5 H 1.48504 * 109.47261 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47146 * 120.00271 * 3 2 1 7 7 C 1.38807 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00039 * 160.28864 * 7 2 1 9 9 N 1.36930 * 120.00205 * 340.28400 * 7 2 1 10 10 C 1.46503 * 119.99969 * 320.53766 * 9 7 2 11 11 C 1.53001 * 109.46911 * 269.99775 * 10 9 7 12 12 C 1.53001 * 109.47288 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47179 * 180.02562 * 12 11 10 14 14 C 1.34784 * 119.99900 * 179.97438 * 13 12 11 15 15 O 1.21277 * 119.99754 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99971 * 179.97438 * 14 13 12 17 17 C 1.54350 * 110.81949 * 292.96974 * 16 14 13 18 18 C 1.51363 * 105.16753 * 215.42534 * 17 16 14 19 19 C 1.38495 * 130.39109 * 197.19111 * 18 17 16 20 20 C 1.38102 * 120.21756 * 180.02562 * 19 18 17 21 21 C 1.38254 * 119.93722 * 359.97438 * 20 19 18 22 22 C 1.38105 * 119.93061 * 0.02562 * 21 20 19 23 23 C 1.38223 * 109.76033 * 17.19327 * 18 17 16 24 24 C 1.51360 * 109.75724 * 359.97438 * 23 18 17 25 25 C 1.46497 * 120.00700 * 140.53333 * 9 7 2 26 26 C 1.53010 * 117.49191 * 3.28927 * 25 9 7 27 27 C 1.53003 * 59.99957 * 252.51124 * 26 25 9 28 28 H 0.97000 * 120.00354 * 355.00578 * 1 2 3 29 29 H 1.09001 * 109.47165 * 29.99118 * 10 9 7 30 30 H 1.08996 * 109.47790 * 149.99725 * 10 9 7 31 31 H 1.09002 * 109.47552 * 299.99881 * 11 10 9 32 32 H 1.08999 * 109.47078 * 59.99919 * 11 10 9 33 33 H 1.09008 * 109.46734 * 299.99733 * 12 11 10 34 34 H 1.08996 * 109.47538 * 59.99874 * 12 11 10 35 35 H 0.96997 * 120.00351 * 0.02562 * 13 12 11 36 36 H 1.08996 * 110.72728 * 56.59501 * 16 14 13 37 37 H 1.08999 * 110.30693 * 334.35463 * 17 16 14 38 38 H 1.09006 * 110.29869 * 96.50473 * 17 16 14 39 39 H 1.08007 * 119.89253 * 0.02562 * 19 18 17 40 40 H 1.08007 * 120.03094 * 179.97438 * 20 19 18 41 41 H 1.07991 * 120.03823 * 179.97438 * 21 20 19 42 42 H 1.07995 * 119.89186 * 180.02562 * 22 21 20 43 43 H 1.09000 * 110.30384 * 223.88496 * 24 23 18 44 44 H 1.09002 * 110.38866 * 101.77907 * 24 23 18 45 45 H 1.08995 * 115.55377 * 148.99346 * 25 9 7 46 46 H 1.08990 * 117.50193 * 0.02562 * 26 25 9 47 47 H 1.09008 * 117.49268 * 145.02347 * 26 25 9 48 48 H 1.09004 * 117.49896 * 252.51715 * 27 26 25 49 49 H 1.08992 * 117.51607 * 107.48005 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1037 1.6965 -1.2126 5 1 1.2850 2.7466 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0428 -1.2293 -0.3160 9 7 1.3859 -2.3534 0.3990 10 6 0.4640 -2.3296 1.5374 11 6 1.2392 -2.6057 2.8272 12 6 0.2766 -2.5803 4.0162 13 7 1.0191 -2.8440 5.2513 14 6 0.3726 -2.8700 6.4337 15 8 -0.8236 -2.6745 6.4751 16 6 1.1362 -3.1419 7.7042 17 6 1.6728 -4.5890 7.7227 18 6 1.5843 -5.0256 9.1693 19 6 2.1992 -6.0771 9.8285 20 6 1.9650 -6.2863 11.1734 21 6 1.1146 -5.4436 11.8649 22 6 0.5006 -4.3946 11.2093 23 6 0.7341 -4.1832 9.8606 24 6 0.1936 -3.1223 8.9260 25 6 1.6396 -3.6090 -0.3118 26 6 2.6701 -3.5847 -1.4426 27 6 1.1797 -3.7016 -1.7682 28 1 -0.4850 0.8368 0.0731 29 1 -0.0097 -1.3500 1.6009 30 1 -0.3004 -3.0948 1.4021 31 1 1.7131 -3.5853 2.7638 32 1 2.0036 -1.8405 2.9626 33 1 -0.1968 -1.6004 4.0795 34 1 -0.4880 -3.3452 3.8811 35 1 1.9760 -2.9993 5.2183 36 1 1.9462 -2.4233 7.8286 37 1 1.0535 -5.2301 7.0954 38 1 2.7083 -4.6127 7.3831 39 1 2.8639 -6.7356 9.2891 40 1 2.4458 -7.1074 11.6844 41 1 0.9301 -5.6060 12.9165 42 1 -0.1632 -3.7366 11.7502 43 1 0.2188 -2.1451 9.4081 44 1 -0.8241 -3.3671 8.6218 45 1 1.5779 -4.5130 0.2940 46 1 3.1595 -2.6348 -1.6573 47 1 3.2866 -4.4730 -1.5807 48 1 0.8157 -4.6668 -2.1205 49 1 0.6880 -2.8286 -2.1971 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752279137.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:11 Heat of formation + Delta-G solvation = 22.365577 kcal Electronic energy + Delta-G solvation = -26823.186495 eV Core-core repulsion = 23136.729141 eV Total energy + Delta-G solvation = -3686.457354 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.74296 -39.19564 -37.13967 -35.76545 -35.19280 -33.55774 -31.76481 -31.57291 -29.97133 -28.99315 -27.52240 -25.53757 -24.08067 -22.91790 -21.59027 -21.41918 -21.16134 -20.99812 -19.94765 -19.51853 -17.33571 -16.51275 -16.40285 -16.06983 -15.78766 -15.38331 -15.15096 -14.95961 -14.63421 -14.34991 -14.02346 -13.60866 -13.47001 -13.36328 -13.13084 -12.91434 -12.66242 -12.43394 -12.22357 -11.91484 -11.54080 -11.50346 -11.45041 -11.37167 -11.04818 -11.01162 -10.82005 -10.77086 -10.67114 -10.23041 -10.13186 -9.75511 -9.62682 -9.57848 -9.26215 -9.06804 -8.87956 -8.75090 -8.49625 -6.55267 -5.80835 -3.48298 1.08791 1.12921 2.66305 3.25083 3.32924 3.39613 3.40248 3.49361 4.04876 4.27760 4.41244 4.68507 4.72217 4.74133 4.78341 4.93605 4.95587 5.11632 5.16930 5.25133 5.30518 5.32825 5.47415 5.48785 5.58159 5.63253 5.74565 5.79642 5.86757 5.91121 5.96362 5.99609 6.12199 6.17616 6.24339 6.26990 6.36462 6.37651 6.39254 6.49657 6.65046 6.66019 6.73375 6.75337 7.03776 7.08499 7.24086 7.60029 7.62096 7.76611 8.29596 8.47198 9.12813 9.73710 10.32613 11.13787 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.002171 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.716264 B =12892.232552 C =13704.004797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.015 3.985 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.262 4.262 8 H 0.063 0.937 9 N -0.551 5.551 10 C 0.154 3.846 11 C -0.145 4.145 12 C 0.120 3.880 13 N -0.723 5.723 14 C 0.518 3.482 15 O -0.541 6.541 16 C -0.111 4.111 17 C -0.071 4.071 18 C -0.097 4.097 19 C -0.105 4.105 20 C -0.124 4.124 21 C -0.120 4.120 22 C -0.108 4.108 23 C -0.090 4.090 24 C -0.069 4.069 25 C 0.121 3.879 26 C -0.196 4.196 27 C -0.222 4.222 28 H 0.256 0.744 29 H 0.095 0.905 30 H 0.028 0.972 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.399 0.601 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.079 0.921 44 H 0.101 0.899 45 H 0.085 0.915 46 H 0.096 0.904 47 H 0.073 0.927 48 H 0.068 0.932 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.424 -10.759 19.919 23.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.186 4.186 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.391 4.391 8 H 0.080 0.920 9 N -0.268 5.268 10 C 0.028 3.972 11 C -0.186 4.186 12 C -0.003 4.003 13 N -0.373 5.373 14 C 0.303 3.697 15 O -0.418 6.418 16 C -0.133 4.133 17 C -0.108 4.108 18 C -0.097 4.097 19 C -0.123 4.123 20 C -0.142 4.142 21 C -0.138 4.138 22 C -0.126 4.126 23 C -0.090 4.090 24 C -0.106 4.106 25 C 0.012 3.988 26 C -0.234 4.234 27 C -0.263 4.263 28 H 0.066 0.934 29 H 0.113 0.887 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.233 0.767 36 H 0.125 0.875 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.098 0.902 44 H 0.119 0.881 45 H 0.103 0.897 46 H 0.115 0.885 47 H 0.091 0.909 48 H 0.087 0.913 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.403 -10.434 19.856 22.687 hybrid contribution 0.972 0.779 -0.087 1.248 sum 4.374 -9.655 19.769 22.432 Atomic orbital electron populations 1.70042 1.05506 1.26378 1.50368 1.25253 0.95006 0.98816 0.99500 0.86498 0.79249 0.83462 0.78327 1.20650 1.21546 1.20812 1.18961 0.93249 0.85046 1.41889 0.91980 1.43329 1.50919 1.03107 1.29395 1.20756 0.90521 1.02687 0.83269 1.22455 0.99227 1.01265 0.95636 1.21477 0.95142 1.01367 0.82364 1.46163 1.12219 1.72046 1.06896 1.20270 0.87850 0.76753 0.84816 1.90696 1.14947 1.49261 1.86874 1.21997 0.99229 0.98561 0.93471 1.20976 1.02243 0.94210 0.93352 1.20516 0.97712 0.95904 0.95580 1.20626 0.99996 0.97217 0.94486 1.21030 0.99120 0.99757 0.94258 1.21042 0.97603 0.95347 0.99844 1.20635 1.00328 0.98369 0.93280 1.20633 0.97218 0.97323 0.93869 1.20948 1.00182 0.97550 0.91953 1.21233 1.00581 0.90626 0.86400 1.23015 0.92195 1.01739 1.06485 1.23347 0.96795 1.00930 1.05191 0.93409 0.88713 0.95302 0.93123 0.91532 0.91450 0.91926 0.76671 0.87484 0.89548 0.89746 0.86156 0.85936 0.85943 0.86153 0.90203 0.88108 0.89719 0.88518 0.90893 0.91329 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.58 11.50 55.49 0.64 -23.94 16 2 C 0.02 0.41 4.98 -17.44 -0.09 0.32 16 3 Si 0.90 20.92 29.60 -169.99 -5.03 15.89 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.26 -6.78 8.47 -15.06 -0.13 -6.91 16 8 H 0.06 1.62 6.75 -52.48 -0.35 1.27 16 9 N -0.55 -13.02 2.75 -165.66 -0.46 -13.48 16 10 C 0.15 3.37 5.33 -4.04 -0.02 3.35 16 11 C -0.15 -2.54 5.65 -26.73 -0.15 -2.69 16 12 C 0.12 1.90 5.67 -4.04 -0.02 1.88 16 13 N -0.72 -9.36 5.56 -60.29 -0.33 -9.70 16 14 C 0.52 7.02 7.04 -10.98 -0.08 6.94 16 15 O -0.54 -9.49 15.50 5.56 0.09 -9.41 16 16 C -0.11 -1.12 3.47 -90.37 -0.31 -1.44 16 17 C -0.07 -0.63 6.31 -26.85 -0.17 -0.80 16 18 C -0.10 -0.95 6.14 -104.21 -0.64 -1.59 16 19 C -0.11 -0.92 10.04 -39.54 -0.40 -1.31 16 20 C -0.12 -0.99 10.05 -39.63 -0.40 -1.38 16 21 C -0.12 -0.97 10.05 -39.62 -0.40 -1.37 16 22 C -0.11 -0.98 10.04 -39.53 -0.40 -1.38 16 23 C -0.09 -0.92 6.14 -104.21 -0.64 -1.56 16 24 C -0.07 -0.73 6.10 -26.86 -0.16 -0.89 16 25 C 0.12 2.52 6.56 -67.92 -0.45 2.07 16 26 C -0.20 -3.82 9.80 -26.72 -0.26 -4.08 16 27 C -0.22 -4.52 10.36 -26.73 -0.28 -4.79 16 28 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 29 H 0.10 2.37 5.59 -51.93 -0.29 2.08 16 30 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.40 4.14 8.47 -40.82 -0.35 3.80 16 36 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 0.83 7.89 -51.93 -0.41 0.42 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 40 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 41 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.10 1.24 6.98 -51.93 -0.36 0.88 16 45 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 46 H 0.10 2.06 6.46 -51.93 -0.34 1.72 16 47 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 48 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.09 2.16 8.14 -51.93 -0.42 1.73 16 LS Contribution 398.75 15.07 6.01 6.01 Total: -1.00 -30.40 398.75 -12.07 -42.47 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -7.99 Total: 7.77 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -4.99 Total: -15.62 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.15 Total: -47.11 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.40 -12.07 -42.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752279137.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.840 kcal (2) G-P(sol) polarization free energy of solvation -30.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds