Wall clock time and date at job start Tue Mar 31 2020 16:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99853 * 2 1 4 4 H 1.48503 * 109.47042 * 239.99926 * 3 2 1 5 5 H 1.48503 * 109.47353 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47251 * 119.99794 * 3 2 1 7 7 C 1.38808 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99401 * 157.94818 * 7 2 1 9 9 N 1.36931 * 120.00483 * 337.95139 * 7 2 1 10 10 C 1.46495 * 120.00147 * 324.91890 * 9 7 2 11 11 C 1.53000 * 109.47332 * 269.99923 * 10 9 7 12 12 C 1.52998 * 109.47137 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.47139 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00270 * 180.02562 * 13 12 11 15 15 O 1.21555 * 120.00038 * 0.02562 * 14 13 12 16 16 C 1.47852 * 120.00008 * 179.97438 * 14 13 12 17 17 C 1.39582 * 120.18857 * 0.02562 * 16 14 13 18 18 C 1.37808 * 119.79068 * 179.97438 * 17 16 14 19 19 C 1.38665 * 120.40515 * 0.02562 * 18 17 16 20 20 C 1.38370 * 120.08224 * 359.97438 * 19 18 17 21 21 C 1.38245 * 119.99414 * 359.73355 * 20 19 18 22 22 C 1.51394 * 109.74673 * 180.02562 * 20 19 18 23 23 C 1.54336 * 105.16978 * 342.77599 * 22 20 19 24 24 C 1.51423 * 130.21467 * 180.02562 * 19 18 17 25 25 C 1.46504 * 119.99914 * 144.91998 * 9 7 2 26 26 C 1.52996 * 117.50076 * 3.23618 * 25 9 7 27 27 C 1.52996 * 117.49895 * 294.57820 * 25 9 7 28 28 H 0.96995 * 119.99929 * 355.76794 * 1 2 3 29 29 H 1.08998 * 109.47179 * 150.00148 * 10 9 7 30 30 H 1.09001 * 109.46974 * 29.99795 * 10 9 7 31 31 H 1.08993 * 109.47514 * 300.00207 * 11 10 9 32 32 H 1.09007 * 109.47039 * 59.99836 * 11 10 9 33 33 H 1.09001 * 109.47482 * 300.00064 * 12 11 10 34 34 H 1.08998 * 109.46865 * 60.00536 * 12 11 10 35 35 H 0.97003 * 120.00132 * 0.02562 * 13 12 11 36 36 H 1.08007 * 120.10932 * 359.97438 * 17 16 14 37 37 H 1.07993 * 119.79551 * 180.02562 * 18 17 16 38 38 H 1.07998 * 119.94814 * 180.25720 * 21 20 19 39 39 H 1.09003 * 110.30067 * 223.85234 * 22 20 19 40 40 H 1.08992 * 110.38740 * 101.74408 * 22 20 19 41 41 H 1.09004 * 110.81536 * 268.18386 * 23 22 20 42 42 H 1.08996 * 110.98604 * 144.72117 * 23 22 20 43 43 H 1.09002 * 110.29877 * 316.11655 * 24 19 18 44 44 H 1.08996 * 110.30141 * 78.26557 * 24 19 18 45 45 H 1.09001 * 115.55137 * 148.90851 * 25 9 7 46 46 H 1.09001 * 117.50044 * 0.02562 * 26 25 9 47 47 H 1.09001 * 117.49995 * 145.02011 * 26 25 9 48 48 H 1.09000 * 117.49966 * 214.98355 * 27 25 9 49 49 H 1.09000 * 117.49907 * 359.97266 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0310 -1.2365 -0.3506 9 7 1.4007 -2.3445 0.4462 10 6 0.4455 -2.2803 1.5550 11 6 1.1884 -2.4656 2.8796 12 6 0.1908 -2.3979 4.0377 13 7 0.9022 -2.5748 5.3061 14 6 0.2218 -2.5521 6.4692 15 8 -0.9822 -2.3853 6.4659 16 6 0.9398 -2.7311 7.7493 17 6 2.3223 -2.9235 7.7576 18 6 2.9833 -3.0890 8.9555 19 6 2.2834 -3.0662 10.1523 20 6 0.9128 -2.8759 10.1507 21 6 0.2405 -2.7028 8.9552 22 6 0.3926 -2.8914 11.5724 23 6 1.5151 -3.5446 12.4061 24 6 2.7755 -3.2218 11.5758 25 6 1.7039 -3.6309 -0.1859 26 6 2.7655 -3.6440 -1.2875 27 6 1.2875 -3.8159 -1.6464 28 1 -0.4850 0.8377 0.0620 29 1 -0.2969 -3.0702 1.4412 30 1 -0.0521 -1.3105 1.5501 31 1 1.6860 -3.4353 2.8845 32 1 1.9308 -1.6757 2.9934 33 1 -0.3065 -1.4280 4.0327 34 1 -0.5518 -3.1876 3.9241 35 1 1.8630 -2.7083 5.3088 36 1 2.8723 -2.9425 6.8283 37 1 4.0530 -3.2374 8.9621 38 1 -0.8286 -2.5502 8.9551 39 1 -0.5194 -3.4851 11.6349 40 1 0.2062 -1.8752 11.9195 41 1 1.3654 -4.6217 12.4808 42 1 1.5782 -3.0943 13.3967 43 1 3.4913 -4.0413 11.6410 44 1 3.2295 -2.2935 11.9226 45 1 1.6464 -4.5011 0.4680 46 1 3.2388 -2.6955 -1.5418 47 1 3.4062 -4.5229 -1.3586 48 1 0.9564 -4.8079 -1.9536 49 1 0.7876 -2.9807 -2.1369 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752292676.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:09 Heat of formation + Delta-G solvation = 23.887152 kcal Electronic energy + Delta-G solvation = -26746.963582 eV Core-core repulsion = 23060.572209 eV Total energy + Delta-G solvation = -3686.391374 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.61401 -39.18078 -37.14335 -35.76867 -35.29325 -33.57737 -31.72265 -31.64220 -29.97915 -28.88963 -27.71247 -25.48976 -23.94785 -22.73992 -22.21544 -21.43910 -21.15854 -20.97469 -19.95425 -19.52491 -17.55964 -16.53792 -16.13298 -15.91129 -15.60984 -15.53259 -15.18323 -15.10731 -14.64546 -14.23850 -14.06401 -13.72197 -13.56391 -13.31549 -13.24617 -12.78510 -12.63017 -12.22046 -12.14359 -11.94320 -11.86631 -11.56541 -11.51404 -11.22157 -11.07268 -11.00306 -10.80809 -10.76020 -10.67307 -10.21732 -10.10883 -9.81157 -9.65022 -9.56988 -9.27043 -9.10083 -8.94077 -8.70728 -8.47850 -6.59475 -5.80443 -3.41566 0.67496 1.12404 2.81739 3.27075 3.34495 3.41340 3.42019 3.70999 4.04177 4.18319 4.42715 4.60941 4.62928 4.70384 4.84667 4.91645 4.92103 5.06366 5.17024 5.27963 5.31460 5.31697 5.39421 5.43263 5.53043 5.65830 5.67971 5.76104 5.76493 5.85205 5.90510 6.01469 6.06906 6.11348 6.15594 6.26688 6.30892 6.38141 6.39639 6.48644 6.62493 6.65613 6.68896 6.77544 7.02834 7.10118 7.21943 7.64071 7.66285 7.77920 8.31507 8.45209 9.12969 9.76201 10.31902 11.15111 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.016726 B = 0.002203 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.601859 B =12707.604731 C =13130.620974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.011 3.989 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.259 4.259 8 H 0.065 0.935 9 N -0.551 5.551 10 C 0.149 3.851 11 C -0.145 4.145 12 C 0.121 3.879 13 N -0.719 5.719 14 C 0.553 3.447 15 O -0.541 6.541 16 C -0.129 4.129 17 C -0.086 4.086 18 C -0.115 4.115 19 C -0.078 4.078 20 C -0.108 4.108 21 C -0.049 4.049 22 C -0.082 4.082 23 C -0.121 4.121 24 C -0.085 4.085 25 C 0.121 3.879 26 C -0.197 4.197 27 C -0.222 4.222 28 H 0.256 0.744 29 H 0.028 0.972 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.398 0.602 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.343 -7.947 22.157 24.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.190 4.190 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.388 4.388 8 H 0.083 0.917 9 N -0.268 5.268 10 C 0.022 3.978 11 C -0.186 4.186 12 C -0.002 4.002 13 N -0.370 5.370 14 C 0.340 3.660 15 O -0.419 6.419 16 C -0.132 4.132 17 C -0.104 4.104 18 C -0.133 4.133 19 C -0.078 4.078 20 C -0.108 4.108 21 C -0.068 4.068 22 C -0.119 4.119 23 C -0.158 4.158 24 C -0.122 4.122 25 C 0.011 3.989 26 C -0.235 4.235 27 C -0.263 4.263 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.120 0.880 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.233 0.767 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.152 0.848 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.115 0.885 47 H 0.092 0.908 48 H 0.087 0.913 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.327 -7.650 22.059 23.745 hybrid contribution 1.002 0.822 -0.261 1.322 sum 5.329 -6.829 21.797 23.455 Atomic orbital electron populations 1.70032 1.05476 1.26249 1.50665 1.25130 0.94982 0.98741 1.00131 0.86482 0.79247 0.83480 0.78286 1.20720 1.21560 1.20881 1.19017 0.94360 0.85543 1.39919 0.91700 1.43392 1.49107 1.01378 1.32876 1.20857 0.90457 1.03356 0.83099 1.22449 0.98854 1.01270 0.95998 1.21492 0.95561 1.01931 0.81250 1.46092 1.11624 1.72966 1.06361 1.18244 0.87012 0.77042 0.83725 1.90767 1.14116 1.49549 1.87508 1.19891 0.93919 1.05727 0.93658 1.21236 0.93212 0.97646 0.98341 1.20551 1.00017 1.01770 0.90946 1.20831 0.94321 0.97624 0.95029 1.20543 0.94411 1.01011 0.94854 1.20708 1.00598 0.95694 0.89771 1.21052 0.98890 1.01728 0.90225 1.22299 0.93904 1.01205 0.98407 1.21117 0.98280 1.02354 0.90443 1.21224 1.00332 0.90235 0.87072 1.23030 0.91933 1.01796 1.06751 1.23363 0.97334 1.00631 1.05007 0.93413 0.95326 0.87980 0.93165 0.91528 0.91276 0.91760 0.76702 0.85227 0.85581 0.84830 0.90463 0.90030 0.90846 0.90404 0.90455 0.89903 0.89625 0.88514 0.90828 0.91259 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.74 11.33 55.49 0.63 -24.11 16 2 C 0.01 0.29 4.96 -17.43 -0.09 0.20 16 3 Si 0.90 21.12 29.61 -169.99 -5.03 16.09 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.26 -6.76 8.63 -15.06 -0.13 -6.89 16 8 H 0.07 1.70 6.55 -52.48 -0.34 1.36 16 9 N -0.55 -13.16 2.78 -165.67 -0.46 -13.62 16 10 C 0.15 3.31 5.34 -4.04 -0.02 3.29 16 11 C -0.15 -2.63 5.65 -26.73 -0.15 -2.78 16 12 C 0.12 2.03 5.67 -4.04 -0.02 2.01 16 13 N -0.72 -10.44 5.51 -61.25 -0.34 -10.77 16 14 C 0.55 8.68 7.77 -12.33 -0.10 8.59 16 15 O -0.54 -10.41 16.35 5.32 0.09 -10.32 16 16 C -0.13 -1.66 5.87 -105.02 -0.62 -2.28 16 17 C -0.09 -0.89 9.54 -39.24 -0.37 -1.27 16 18 C -0.11 -1.06 10.02 -39.58 -0.40 -1.45 16 19 C -0.08 -0.71 6.14 -104.06 -0.64 -1.35 16 20 C -0.11 -1.09 6.13 -104.23 -0.64 -1.73 16 21 C -0.05 -0.60 9.59 -39.13 -0.38 -0.97 16 22 C -0.08 -0.59 6.77 -26.84 -0.18 -0.78 16 23 C -0.12 -0.68 7.08 -25.33 -0.18 -0.86 16 24 C -0.09 -0.54 6.77 -26.83 -0.18 -0.72 16 25 C 0.12 2.53 6.56 -67.93 -0.45 2.09 16 26 C -0.20 -3.84 9.80 -26.70 -0.26 -4.10 16 27 C -0.22 -4.53 10.36 -26.70 -0.28 -4.80 16 28 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 29 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 30 H 0.10 2.60 5.36 -51.93 -0.28 2.32 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.40 4.72 6.51 -40.82 -0.27 4.45 16 36 H 0.13 1.10 6.41 -52.48 -0.34 0.76 16 37 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 38 H 0.13 1.67 7.64 -52.49 -0.40 1.26 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 46 H 0.10 2.06 6.37 -51.93 -0.33 1.73 16 47 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 48 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 49 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 LS Contribution 396.82 15.07 5.98 5.98 Total: -1.00 -30.82 396.82 -12.06 -42.88 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -7.85 Total: 7.69 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -5.07 Total: -13.82 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -0.17 Total: -48.50 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.82 -12.06 -42.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752292676.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.771 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds