Wall clock time and date at job start Tue Mar 31 2020 16:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99853 * 2 1 4 4 H 1.48503 * 109.47042 * 239.99926 * 3 2 1 5 5 H 1.48503 * 109.47353 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47251 * 119.99794 * 3 2 1 7 7 C 1.38808 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99401 * 157.94818 * 7 2 1 9 9 N 1.36931 * 120.00483 * 337.95139 * 7 2 1 10 10 C 1.46495 * 120.00147 * 324.91890 * 9 7 2 11 11 C 1.53000 * 109.47332 * 269.99923 * 10 9 7 12 12 C 1.52998 * 109.47137 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.47139 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00270 * 180.02562 * 13 12 11 15 15 O 1.21555 * 120.00038 * 0.02562 * 14 13 12 16 16 C 1.47852 * 120.00008 * 179.97438 * 14 13 12 17 17 C 1.39582 * 120.18857 * 0.02562 * 16 14 13 18 18 C 1.37808 * 119.79068 * 179.97438 * 17 16 14 19 19 C 1.38665 * 120.40515 * 0.02562 * 18 17 16 20 20 C 1.38370 * 120.08224 * 359.97438 * 19 18 17 21 21 C 1.38245 * 119.99414 * 359.73355 * 20 19 18 22 22 C 1.51394 * 109.74673 * 180.02562 * 20 19 18 23 23 C 1.54336 * 105.16978 * 342.77599 * 22 20 19 24 24 C 1.51423 * 130.21467 * 180.02562 * 19 18 17 25 25 C 1.46504 * 119.99914 * 144.91998 * 9 7 2 26 26 C 1.52996 * 117.50076 * 3.23618 * 25 9 7 27 27 C 1.52996 * 117.49895 * 294.57820 * 25 9 7 28 28 H 0.96995 * 119.99929 * 355.76794 * 1 2 3 29 29 H 1.08998 * 109.47179 * 150.00148 * 10 9 7 30 30 H 1.09001 * 109.46974 * 29.99795 * 10 9 7 31 31 H 1.08993 * 109.47514 * 300.00207 * 11 10 9 32 32 H 1.09007 * 109.47039 * 59.99836 * 11 10 9 33 33 H 1.09001 * 109.47482 * 300.00064 * 12 11 10 34 34 H 1.08998 * 109.46865 * 60.00536 * 12 11 10 35 35 H 0.97003 * 120.00132 * 0.02562 * 13 12 11 36 36 H 1.08007 * 120.10932 * 359.97438 * 17 16 14 37 37 H 1.07993 * 119.79551 * 180.02562 * 18 17 16 38 38 H 1.07998 * 119.94814 * 180.25720 * 21 20 19 39 39 H 1.09003 * 110.30067 * 223.85234 * 22 20 19 40 40 H 1.08992 * 110.38740 * 101.74408 * 22 20 19 41 41 H 1.09004 * 110.81536 * 268.18386 * 23 22 20 42 42 H 1.08996 * 110.98604 * 144.72117 * 23 22 20 43 43 H 1.09002 * 110.29877 * 316.11655 * 24 19 18 44 44 H 1.08996 * 110.30141 * 78.26557 * 24 19 18 45 45 H 1.09001 * 115.55137 * 148.90851 * 25 9 7 46 46 H 1.09001 * 117.50044 * 0.02562 * 26 25 9 47 47 H 1.09001 * 117.49995 * 145.02011 * 26 25 9 48 48 H 1.09000 * 117.49966 * 214.98355 * 27 25 9 49 49 H 1.09000 * 117.49907 * 359.97266 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0310 -1.2365 -0.3506 9 7 1.4007 -2.3445 0.4462 10 6 0.4455 -2.2803 1.5550 11 6 1.1884 -2.4656 2.8796 12 6 0.1908 -2.3979 4.0377 13 7 0.9022 -2.5748 5.3061 14 6 0.2218 -2.5521 6.4692 15 8 -0.9822 -2.3853 6.4659 16 6 0.9398 -2.7311 7.7493 17 6 2.3223 -2.9235 7.7576 18 6 2.9833 -3.0890 8.9555 19 6 2.2834 -3.0662 10.1523 20 6 0.9128 -2.8759 10.1507 21 6 0.2405 -2.7028 8.9552 22 6 0.3926 -2.8914 11.5724 23 6 1.5151 -3.5446 12.4061 24 6 2.7755 -3.2218 11.5758 25 6 1.7039 -3.6309 -0.1859 26 6 2.7655 -3.6440 -1.2875 27 6 1.2875 -3.8159 -1.6464 28 1 -0.4850 0.8377 0.0620 29 1 -0.2969 -3.0702 1.4412 30 1 -0.0521 -1.3105 1.5501 31 1 1.6860 -3.4353 2.8845 32 1 1.9308 -1.6757 2.9934 33 1 -0.3065 -1.4280 4.0327 34 1 -0.5518 -3.1876 3.9241 35 1 1.8630 -2.7083 5.3088 36 1 2.8723 -2.9425 6.8283 37 1 4.0530 -3.2374 8.9621 38 1 -0.8286 -2.5502 8.9551 39 1 -0.5194 -3.4851 11.6349 40 1 0.2062 -1.8752 11.9195 41 1 1.3654 -4.6217 12.4808 42 1 1.5782 -3.0943 13.3967 43 1 3.4913 -4.0413 11.6410 44 1 3.2295 -2.2935 11.9226 45 1 1.6464 -4.5011 0.4680 46 1 3.2388 -2.6955 -1.5418 47 1 3.4062 -4.5229 -1.3586 48 1 0.9564 -4.8079 -1.9536 49 1 0.7876 -2.9807 -2.1369 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752292676.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:08 Heat of formation + Delta-G solvation = 8.324334 kcal Electronic energy + Delta-G solvation = -26747.638437 eV Core-core repulsion = 23060.572209 eV Total energy + Delta-G solvation = -3687.066228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.50986 -40.24316 -38.85843 -36.74461 -36.49832 -35.28120 -33.36676 -32.47866 -31.41220 -29.98082 -28.35203 -27.18816 -25.46739 -23.82949 -23.10407 -23.02874 -22.49513 -21.71690 -21.52352 -20.85439 -18.57448 -18.28314 -17.39997 -17.16679 -16.70549 -16.56021 -16.39427 -16.34673 -15.93922 -15.77129 -15.29892 -15.08864 -14.62663 -14.41971 -14.10446 -13.92479 -13.72803 -13.68719 -13.53006 -13.21562 -12.85179 -12.74981 -12.62055 -12.54136 -12.44827 -12.29607 -12.04514 -12.03442 -11.87393 -11.81868 -11.69358 -11.45448 -11.30111 -11.11650 -10.87929 -10.45705 -10.23833 -9.87172 -9.53437 -8.53666 -7.79143 -5.44637 -0.20709 0.34123 1.44765 1.47391 1.53481 1.76523 2.07270 2.49650 2.79143 3.15059 3.38757 3.41456 3.50175 3.58212 3.73332 3.99331 4.11605 4.15928 4.18931 4.24193 4.27337 4.32573 4.36166 4.46109 4.54322 4.59468 4.67219 4.71064 4.75296 4.86068 4.90236 4.95203 4.95637 5.01651 5.07705 5.10472 5.11270 5.17640 5.28665 5.31241 5.36742 5.37710 5.40472 5.46412 5.55284 5.56388 5.69005 5.85579 5.88972 6.45161 6.47247 7.11503 7.15499 7.86429 8.35827 9.11251 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.016726 B = 0.002203 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.601859 B =12707.604731 C =13130.620974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.039 4.039 3 Si 0.951 3.049 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.276 1.276 7 C -0.256 4.256 8 H 0.063 0.937 9 N -0.568 5.568 10 C 0.148 3.852 11 C -0.121 4.121 12 C 0.133 3.867 13 N -0.708 5.708 14 C 0.551 3.449 15 O -0.587 6.587 16 C -0.152 4.152 17 C -0.085 4.085 18 C -0.116 4.116 19 C -0.075 4.075 20 C -0.119 4.119 21 C -0.068 4.068 22 C -0.085 4.085 23 C -0.116 4.116 24 C -0.084 4.084 25 C 0.101 3.899 26 C -0.180 4.180 27 C -0.223 4.223 28 H 0.249 0.751 29 H 0.030 0.970 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.413 0.587 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.117 0.883 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.115 0.885 46 H 0.074 0.926 47 H 0.112 0.888 48 H 0.101 0.899 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.379 -9.610 24.193 27.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.237 4.237 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.202 1.202 7 C -0.386 4.386 8 H 0.081 0.919 9 N -0.285 5.285 10 C 0.021 3.979 11 C -0.161 4.161 12 C 0.009 3.991 13 N -0.360 5.360 14 C 0.340 3.660 15 O -0.469 6.469 16 C -0.155 4.155 17 C -0.103 4.103 18 C -0.133 4.133 19 C -0.076 4.076 20 C -0.119 4.119 21 C -0.087 4.087 22 C -0.122 4.122 23 C -0.153 4.153 24 C -0.121 4.121 25 C -0.007 4.007 26 C -0.218 4.218 27 C -0.264 4.264 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.251 0.749 36 H 0.166 0.834 37 H 0.174 0.826 38 H 0.135 0.865 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.132 0.868 46 H 0.093 0.907 47 H 0.131 0.869 48 H 0.119 0.881 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.417 -9.338 24.097 26.886 hybrid contribution 0.068 1.263 -0.873 1.537 sum 7.485 -8.075 23.223 25.701 Atomic orbital electron populations 1.70171 1.06744 1.26284 1.52688 1.25778 0.95551 1.01427 1.00906 0.85595 0.77965 0.80024 0.78454 1.20248 1.22387 1.20156 1.19206 0.94267 0.86559 1.38591 0.91915 1.43592 1.49137 1.01976 1.33770 1.20752 0.90744 1.01532 0.84831 1.22088 0.98057 1.01912 0.94035 1.21174 0.95278 1.00634 0.82047 1.45884 1.12283 1.72527 1.05310 1.18747 0.86614 0.75860 0.84780 1.90733 1.16191 1.51789 1.88187 1.19719 0.95075 1.08618 0.92129 1.21454 0.92018 0.96887 0.99945 1.20916 1.01482 1.00607 0.90315 1.21332 0.93899 0.95637 0.96705 1.20869 0.95256 1.00452 0.95291 1.20734 1.00113 0.97057 0.90844 1.21170 0.99759 1.02445 0.88866 1.22333 0.92564 1.01480 0.98902 1.21230 0.98867 1.03652 0.88313 1.21567 1.01543 0.89818 0.87733 1.23038 0.91635 1.02323 1.04791 1.23284 0.98099 1.00803 1.04222 0.94131 0.95169 0.91443 0.90940 0.92664 0.93663 0.91932 0.74909 0.83406 0.82600 0.86533 0.90337 0.89415 0.90447 0.88388 0.88766 0.88585 0.86765 0.90738 0.86948 0.88109 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.25 11.33 21.65 0.25 -53.00 16 2 C -0.04 -2.15 4.96 84.86 0.42 -1.73 16 3 Si 0.95 44.20 29.61 68.60 2.03 46.24 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.26 -13.48 8.63 84.03 0.72 -12.76 16 8 H 0.06 3.29 6.55 -2.91 -0.02 3.27 16 9 N -0.57 -27.09 2.78 -678.06 -1.88 -28.98 16 10 C 0.15 6.68 5.34 86.38 0.46 7.14 16 11 C -0.12 -4.33 5.65 30.59 0.17 -4.16 16 12 C 0.13 4.56 5.67 86.38 0.49 5.05 16 13 N -0.71 -20.54 5.51 -465.97 -2.57 -23.10 16 14 C 0.55 17.86 7.77 86.79 0.67 18.54 16 15 O -0.59 -23.94 16.35 -3.89 -0.06 -24.01 16 16 C -0.15 -3.97 5.87 -20.12 -0.12 -4.08 16 17 C -0.08 -1.62 9.54 22.49 0.21 -1.41 16 18 C -0.12 -1.79 10.02 22.27 0.22 -1.57 16 19 C -0.08 -1.19 6.14 -19.50 -0.12 -1.31 16 20 C -0.12 -2.28 6.13 -19.61 -0.12 -2.40 16 21 C -0.07 -1.73 9.59 22.56 0.22 -1.51 16 22 C -0.09 -1.11 6.77 30.52 0.21 -0.91 16 23 C -0.12 -0.94 7.08 31.50 0.22 -0.72 16 24 C -0.08 -0.76 6.77 30.53 0.21 -0.56 16 25 C 0.10 4.09 6.56 44.99 0.30 4.39 16 26 C -0.18 -6.61 9.80 30.61 0.30 -6.31 16 27 C -0.22 -8.81 10.36 30.61 0.32 -8.49 16 28 H 0.25 14.23 8.32 -92.71 -0.77 13.46 16 29 H 0.03 1.31 8.07 -2.39 -0.02 1.29 16 30 H 0.07 3.59 5.36 -2.39 -0.01 3.58 16 31 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.41 9.28 6.51 -92.71 -0.60 8.68 16 36 H 0.15 2.15 6.41 -2.91 -0.02 2.14 16 37 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 38 H 0.12 3.20 7.64 -2.91 -0.02 3.18 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 42 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 46 H 0.07 3.09 6.37 -2.39 -0.02 3.07 16 47 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 48 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 49 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -69.90 396.82 2.90 -67.01 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.34 Total: 28.66 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 4.79 Total: -12.81 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -4.21 Total: -105.09 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.06 Total: -24.01 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.24 kcal Total: -69.90 2.90 -67.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752292676.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.331 kcal (2) G-P(sol) polarization free energy of solvation -69.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds