Wall clock time and date at job start Tue Mar 31 2020 16:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99952 * 2 1 4 4 H 1.48497 * 109.47045 * 240.00041 * 3 2 1 5 5 H 1.48507 * 109.47142 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47255 * 119.99943 * 3 2 1 7 7 C 1.38815 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99779 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99731 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99794 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47401 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.47503 * 295.00413 * 11 10 9 13 13 N 1.46500 * 109.47096 * 55.00068 * 11 10 9 14 14 C 1.34779 * 120.00247 * 204.99915 * 13 11 10 15 15 O 1.21553 * 120.00104 * 0.02562 * 14 13 11 16 16 C 1.47843 * 120.00124 * 179.97438 * 14 13 11 17 17 C 1.39332 * 119.88204 * 6.16347 * 16 14 13 18 18 C 1.37942 * 119.61112 * 180.02562 * 17 16 14 19 19 C 1.38093 * 119.92664 * 0.14187 * 18 17 16 20 20 C 1.39013 * 120.86256 * 359.91707 * 19 18 17 21 21 C 1.37433 * 119.76631 * 359.56388 * 20 19 18 22 22 C 1.50603 * 122.63150 * 180.40263 * 21 20 19 23 23 C 1.52734 * 110.66575 * 342.63751 * 22 21 20 24 24 C 1.53329 * 108.36592 * 50.84810 * 23 22 21 25 25 C 1.50654 * 117.69682 * 179.65211 * 20 19 18 26 26 C 1.52994 * 109.47506 * 175.00125 * 11 10 9 27 27 C 1.53002 * 117.49923 * 248.75031 * 26 11 10 28 28 C 1.53003 * 117.50215 * 180.08688 * 26 11 10 29 29 H 0.96997 * 120.00096 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00248 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47155 * 300.00436 * 10 9 7 32 32 H 1.09000 * 109.47008 * 60.00283 * 10 9 7 33 33 H 0.97001 * 120.00278 * 25.00275 * 13 11 10 34 34 H 1.08001 * 120.19263 * 0.02562 * 17 16 14 35 35 H 1.08000 * 120.03580 * 180.11577 * 18 17 16 36 36 H 1.08002 * 119.56234 * 179.89649 * 19 18 17 37 37 H 1.09000 * 109.39909 * 222.21251 * 22 21 20 38 38 H 1.09007 * 109.00589 * 102.81151 * 22 21 20 39 39 H 1.09004 * 109.68772 * 291.12869 * 23 22 21 40 40 H 1.09005 * 109.68609 * 170.56604 * 23 22 21 41 41 H 1.09003 * 109.68066 * 170.50037 * 24 23 22 42 42 H 1.09002 * 109.68019 * 49.94866 * 24 23 22 43 43 H 1.09002 * 109.25085 * 282.60385 * 25 20 19 44 44 H 1.09001 * 109.24854 * 42.02062 * 25 20 19 45 45 H 1.09000 * 115.55020 * 34.41402 * 26 11 10 46 46 H 1.08998 * 117.50030 * 359.97438 * 27 26 11 47 47 H 1.09002 * 117.49646 * 145.02110 * 27 26 11 48 48 H 1.08994 * 117.50118 * 214.97865 * 28 26 11 49 49 H 1.08994 * 117.49836 * 359.97438 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0639 -4.8197 0.0022 12 1 0.4979 -4.8135 0.9338 13 7 0.1439 -4.6763 -1.1289 14 6 -1.0805 -5.2372 -1.0770 15 8 -1.4218 -5.8616 -0.0915 16 6 -2.0091 -5.0920 -2.2183 17 6 -1.5730 -4.4873 -3.3953 18 6 -2.4443 -4.3542 -4.4565 19 6 -3.7406 -4.8171 -4.3458 20 6 -4.1848 -5.4206 -3.1749 21 6 -3.3233 -5.5687 -2.1144 22 6 -3.7332 -6.2203 -0.8200 23 6 -5.2551 -6.2777 -0.7037 24 6 -5.8152 -6.8919 -1.9921 25 6 -5.6149 -5.8921 -3.1291 26 6 1.8246 -6.1412 -0.1234 27 6 1.6661 -6.9263 -1.4270 28 6 1.0017 -7.4309 -0.1435 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3880 0.0016 31 1 2.6841 -3.7149 -0.8888 32 1 2.6853 -3.7141 0.8912 33 1 0.4160 -4.1778 -1.9152 34 1 -0.5589 -4.1248 -3.4764 35 1 -2.1130 -3.8883 -5.3728 36 1 -4.4182 -4.7084 -5.1797 37 1 -3.3302 -5.6492 0.0164 38 1 -3.3320 -7.2334 -0.7899 39 1 -5.6517 -5.2707 -0.5743 40 1 -5.5351 -6.8956 0.1495 41 1 -6.8782 -7.0988 -1.8682 42 1 -5.2846 -7.8167 -2.2188 43 1 -6.2709 -5.0355 -2.9742 44 1 -5.8663 -6.3698 -4.0761 45 1 2.7972 -6.1723 0.3677 46 1 1.0195 -6.5017 -2.1949 47 1 2.5342 -7.4744 -1.7932 48 1 1.4331 -8.3106 0.3341 49 1 -0.0815 -7.3380 -0.0667 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754440520.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:43 Heat of formation + Delta-G solvation = 18.132971 kcal Electronic energy + Delta-G solvation = -28709.848410 eV Core-core repulsion = 25023.207517 eV Total energy + Delta-G solvation = -3686.640894 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.69254 -39.24131 -37.00349 -36.11161 -34.87955 -33.30096 -32.42234 -31.20403 -30.21540 -29.14964 -27.81594 -24.27363 -23.90899 -23.20990 -22.65401 -22.21666 -21.46530 -20.49175 -19.82359 -19.13478 -17.48885 -16.95642 -16.24560 -15.95280 -15.65877 -15.29113 -15.08474 -14.85718 -14.41246 -14.05292 -13.79704 -13.75988 -13.58038 -13.22155 -13.03040 -12.82530 -12.61376 -12.48521 -12.11891 -11.93247 -11.75785 -11.62241 -11.48136 -11.30935 -11.16765 -10.90683 -10.85302 -10.81533 -10.77449 -10.33089 -10.22561 -10.05803 -9.78621 -9.55954 -9.23749 -8.91810 -8.82489 -8.59194 -8.44878 -6.96713 -5.78059 -3.08223 0.95221 1.39822 3.05926 3.42081 3.45511 3.47323 3.48232 3.92261 4.09156 4.55428 4.55867 4.65785 4.83324 4.87559 4.94929 4.99924 5.06932 5.17740 5.20645 5.23035 5.26388 5.38674 5.53034 5.54307 5.58109 5.60260 5.73900 5.77061 5.79971 5.85505 5.88075 5.93952 6.00771 6.03373 6.04005 6.11685 6.24696 6.28954 6.34092 6.36258 6.38554 6.46421 6.50424 6.55972 6.67642 6.74509 6.95668 6.96801 7.67177 7.87086 8.39393 8.53473 9.51229 10.06990 10.42505 11.43986 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.003860 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.217298 B = 7252.749787 C = 8614.889390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.169 3.831 12 H 0.092 0.908 13 N -0.703 5.703 14 C 0.559 3.441 15 O -0.535 6.535 16 C -0.133 4.133 17 C -0.081 4.081 18 C -0.131 4.131 19 C -0.097 4.097 20 C -0.094 4.094 21 C -0.014 4.014 22 C -0.083 4.083 23 C -0.125 4.125 24 C -0.120 4.120 25 C -0.077 4.077 26 C -0.160 4.160 27 C -0.178 4.178 28 C -0.186 4.186 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.025 0.975 32 H 0.034 0.966 33 H 0.403 0.597 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.109 0.891 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.970 -15.799 -8.223 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.064 3.936 12 H 0.110 0.890 13 N -0.354 5.354 14 C 0.347 3.653 15 O -0.415 6.415 16 C -0.136 4.136 17 C -0.099 4.099 18 C -0.149 4.149 19 C -0.116 4.116 20 C -0.094 4.094 21 C -0.015 4.015 22 C -0.120 4.120 23 C -0.162 4.162 24 C -0.158 4.158 25 C -0.114 4.114 26 C -0.180 4.180 27 C -0.215 4.215 28 C -0.223 4.223 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.239 0.761 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.123 0.877 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.127 0.873 46 H 0.109 0.891 47 H 0.104 0.896 48 H 0.102 0.898 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.053 -16.090 -7.504 19.495 hybrid contribution 0.542 1.400 -0.546 1.597 sum -7.512 -14.691 -8.049 18.358 Atomic orbital electron populations 1.69660 1.05089 1.25802 1.57253 1.24742 0.95478 0.97657 1.02783 0.86277 0.78521 0.83569 0.77840 1.21280 1.21704 1.21254 1.19160 0.90986 0.84065 1.43321 0.91202 1.42342 1.06000 0.99690 1.89598 1.20912 0.93056 0.85141 0.98935 1.20757 0.90136 0.92798 0.89902 0.89001 1.45923 1.14358 1.54276 1.20808 1.18204 0.81538 0.78906 0.86627 1.90635 1.75277 1.41980 1.33627 1.19974 0.94906 1.03919 0.94849 1.21291 0.99948 0.96211 0.92490 1.20969 0.93813 1.01111 0.99043 1.21299 0.95920 0.97174 0.97176 1.19552 0.95959 1.00473 0.93418 1.19695 0.91372 0.95021 0.95404 1.20784 0.94539 1.01492 0.95141 1.21668 0.96121 1.01162 0.97282 1.21562 1.00735 0.98393 0.95084 1.20437 0.92446 0.99135 0.99347 1.22695 1.00760 0.92518 1.01997 1.22884 1.02907 1.04054 0.91669 1.23335 1.01617 0.96673 1.00670 0.93434 0.77971 0.95677 0.94805 0.76051 0.85520 0.85565 0.86050 0.87735 0.90287 0.91802 0.91523 0.91718 0.91739 0.90677 0.90990 0.87317 0.89073 0.89587 0.89844 0.86471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.96 13.06 55.49 0.72 -27.24 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -18.06 5.43 -59.91 -0.33 -18.38 16 10 C 0.15 2.87 5.80 -4.04 -0.02 2.85 16 11 C 0.17 2.85 2.59 -67.94 -0.18 2.68 16 12 H 0.09 1.76 7.58 -51.93 -0.39 1.36 16 13 N -0.70 -11.40 3.00 -54.75 -0.16 -11.57 16 14 C 0.56 9.28 6.51 -12.33 -0.08 9.20 16 15 O -0.54 -9.62 10.11 5.32 0.05 -9.56 16 16 C -0.13 -2.03 5.88 -104.83 -0.62 -2.64 16 17 C -0.08 -1.10 9.52 -39.28 -0.37 -1.47 16 18 C -0.13 -1.56 10.03 -39.74 -0.40 -1.96 16 19 C -0.10 -1.10 9.60 -39.35 -0.38 -1.48 16 20 C -0.09 -1.15 5.73 -104.65 -0.60 -1.75 16 21 C -0.01 -0.20 5.77 -104.23 -0.60 -0.80 16 22 C -0.08 -1.14 4.19 -28.07 -0.12 -1.25 16 23 C -0.12 -1.37 5.98 -26.70 -0.16 -1.53 16 24 C -0.12 -1.11 5.98 -26.70 -0.16 -1.27 16 25 C -0.08 -0.73 5.67 -28.05 -0.16 -0.89 16 26 C -0.16 -2.29 5.70 -90.62 -0.52 -2.81 16 27 C -0.18 -2.34 9.74 -26.69 -0.26 -2.60 16 28 C -0.19 -2.60 9.83 -26.69 -0.26 -2.86 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.39 10.23 7.33 -40.82 -0.30 9.93 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.40 6.37 6.65 -40.82 -0.27 6.10 16 34 H 0.13 1.59 6.43 -52.49 -0.34 1.26 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.12 1.05 8.05 -52.49 -0.42 0.63 16 37 H 0.10 1.69 6.00 -51.93 -0.31 1.38 16 38 H 0.08 1.09 8.01 -51.92 -0.42 0.67 16 39 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 45 H 0.11 1.44 8.11 -51.93 -0.42 1.02 16 46 H 0.09 1.24 6.67 -51.93 -0.35 0.89 16 47 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.12 1.87 5.01 -51.93 -0.26 1.61 16 LS Contribution 381.84 15.07 5.75 5.75 Total: -1.00 -30.72 381.84 -11.78 -42.50 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -7.67 Total: 17.13 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -5.13 Total: -15.83 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.23 Total: -57.19 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.05 Total: -9.56 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.72 -11.78 -42.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754440520.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.631 kcal (2) G-P(sol) polarization free energy of solvation -30.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds