Wall clock time and date at job start Tue Mar 31 2020 14:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47190 * 2 1 4 4 C 1.53002 * 109.46792 * 240.00390 * 2 1 3 5 5 C 1.47194 * 109.47127 * 120.00508 * 2 1 3 6 6 C 2.64601 * 109.47201 * 120.00278 * 2 1 3 7 7 C 4.07801 * 109.47127 * 120.00387 * 2 1 3 8 8 O 1.21616 * 119.99930 * 297.98198 * 7 6 5 9 9 N 1.34769 * 119.99655 * 118.25837 * 7 6 5 10 10 C 1.46505 * 119.99850 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47111 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.49731 * 55.00203 * 11 10 9 13 13 C 1.53195 * 109.49865 * 294.93761 * 11 10 9 14 14 N 1.46916 * 108.77512 * 185.41183 * 13 11 10 15 15 C 1.36939 * 120.63143 * 233.63063 * 14 13 11 16 16 H 1.08004 * 119.99927 * 151.82786 * 15 14 13 17 17 C 1.38809 * 120.00103 * 331.82366 * 15 14 13 18 18 N 1.31612 * 120.00263 * 343.07808 * 17 15 14 19 19 Si 1.86807 * 119.99843 * 163.07129 * 17 15 14 20 20 H 1.48499 * 109.46641 * 90.00479 * 19 17 15 21 21 H 1.48495 * 109.46791 * 210.00278 * 19 17 15 22 22 H 1.48500 * 109.47206 * 330.00496 * 19 17 15 23 23 C 1.46927 * 118.73979 * 53.61156 * 14 13 11 24 24 C 1.53196 * 108.77627 * 306.39066 * 23 14 13 25 25 C 1.53037 * 109.49627 * 175.07112 * 11 10 9 26 26 F 1.39902 * 109.45846 * 301.33561 * 25 11 10 27 27 F 1.39896 * 109.46503 * 61.29438 * 25 11 10 28 28 H 1.09002 * 109.46866 * 299.99665 * 1 2 3 29 29 H 1.09006 * 109.46961 * 59.99591 * 1 2 3 30 30 H 1.08994 * 109.47101 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47213 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47522 * 299.99946 * 3 2 1 33 33 H 1.08999 * 109.47398 * 60.00599 * 3 2 1 34 34 H 1.09008 * 109.47070 * 299.99887 * 4 2 1 35 35 H 1.08995 * 109.47311 * 59.99815 * 4 2 1 36 36 H 1.08993 * 109.47279 * 180.02562 * 4 2 1 37 37 H 0.96996 * 120.00647 * 0.02562 * 9 7 6 38 38 H 1.08993 * 109.47642 * 300.00734 * 10 9 7 39 39 H 1.09001 * 109.46862 * 60.00992 * 10 9 7 40 40 H 1.09003 * 109.58617 * 305.20276 * 13 11 10 41 41 H 1.09006 * 109.58222 * 65.62506 * 13 11 10 42 42 H 0.96996 * 120.00662 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.58839 * 66.17645 * 23 14 13 44 44 H 1.09002 * 109.59104 * 186.45878 * 23 14 13 45 45 H 1.08993 * 109.49637 * 174.58224 * 24 23 14 46 46 H 1.08994 * 109.49385 * 294.64964 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0207 -0.6940 1.2018 6 6 2.4121 -1.2474 2.1604 7 6 2.8894 -1.9226 3.3295 8 8 2.2502 -1.8745 4.3631 9 7 4.0497 -2.6067 3.2860 10 6 4.5383 -3.2970 4.4823 11 6 5.8651 -3.9899 4.1651 12 1 6.5701 -3.2606 3.7661 13 6 5.6306 -5.0941 3.1295 14 7 6.8853 -5.8328 2.9334 15 6 7.4096 -5.9970 1.6791 16 1 8.4759 -6.1097 1.5500 17 6 6.5705 -6.0187 0.5735 18 7 5.2790 -6.2167 0.7313 19 14 7.2745 -5.7666 -1.1384 20 1 7.6578 -7.0806 -1.7143 21 1 6.2525 -5.1257 -2.0044 22 1 8.4727 -4.8932 -1.0572 23 6 7.5672 -6.3916 4.1088 24 6 7.7801 -5.2729 5.1335 25 6 6.4373 -4.6072 5.4433 26 9 6.6233 -3.6054 6.4019 27 9 5.5459 -5.5653 5.9377 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2494 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7216 -1.2492 37 1 4.5617 -2.6415 2.4630 38 1 4.6891 -2.5734 5.2833 39 1 3.8061 -4.0405 4.7973 40 1 4.8584 -5.7743 3.4890 41 1 5.3173 -4.6487 2.1852 42 1 4.6927 -6.2323 -0.0412 43 1 6.9531 -7.1776 4.5482 44 1 8.5307 -6.8047 3.8102 45 1 8.1978 -5.6925 6.0486 46 1 8.4679 -4.5322 4.7258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754743869.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:24 Heat of formation + Delta-G solvation = -83.428431 kcal Electronic energy + Delta-G solvation = -28752.298996 eV Core-core repulsion = 24507.024540 eV Total energy + Delta-G solvation = -4245.274457 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.54815 -46.49889 -39.50260 -37.70006 -37.32421 -34.85775 -32.84368 -32.35892 -30.96134 -29.84213 -27.57462 -27.52343 -26.21195 -25.23434 -23.57582 -22.39918 -21.36223 -20.75747 -19.61944 -18.49606 -17.10702 -16.83633 -16.40756 -16.01765 -15.64270 -15.37429 -15.21753 -14.89416 -14.50790 -14.48625 -14.06586 -13.98727 -13.59302 -13.26976 -13.10833 -12.86332 -12.82238 -12.69436 -12.64633 -12.26079 -11.99380 -11.94732 -11.77504 -11.70596 -11.60161 -11.49738 -11.45365 -11.23834 -10.86824 -10.63327 -10.56672 -10.46741 -10.29415 -10.10682 -10.05883 -9.96991 -9.71659 -8.91170 -8.66790 -6.93168 -5.98106 -3.42620 1.67081 2.33965 3.17812 3.25524 3.33885 3.35128 3.64894 4.06928 4.25310 4.34796 4.57893 4.66447 4.68990 4.71820 4.78779 4.92375 5.14500 5.25916 5.30501 5.33250 5.37397 5.40687 5.49428 5.51770 5.59420 5.60408 5.76918 5.79461 5.84861 5.88466 5.98699 6.00400 6.04248 6.05172 6.19865 6.34534 6.47614 6.49305 6.71145 6.97807 7.26609 7.34287 7.59851 7.62510 8.22243 8.26321 8.98804 9.61035 10.17078 11.10805 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.009183 B = 0.004236 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.414303 B = 6608.973773 C = 9059.439837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.038 3.962 3 C -0.141 4.141 4 C -0.143 4.143 5 C -0.074 4.074 6 C -0.214 4.214 7 C 0.633 3.367 8 O -0.531 6.531 9 N -0.704 5.704 10 C 0.128 3.872 11 C -0.165 4.165 12 H 0.099 0.901 13 C 0.178 3.822 14 N -0.591 5.591 15 C -0.261 4.261 16 H 0.070 0.930 17 C 0.007 3.993 18 N -0.899 5.899 19 Si 0.902 3.098 20 H -0.285 1.285 21 H -0.288 1.288 22 H -0.278 1.278 23 C 0.143 3.857 24 C -0.170 4.170 25 C 0.300 3.700 26 F -0.213 7.213 27 F -0.199 7.199 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.410 0.590 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.035 0.965 41 H 0.101 0.899 42 H 0.257 0.743 43 H 0.031 0.969 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.081 11.096 -0.500 11.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.038 3.962 3 C -0.198 4.198 4 C -0.201 4.201 5 C -0.077 4.077 6 C -0.217 4.217 7 C 0.420 3.580 8 O -0.410 6.410 9 N -0.355 5.355 10 C 0.005 3.995 11 C -0.187 4.187 12 H 0.118 0.882 13 C 0.052 3.948 14 N -0.313 5.313 15 C -0.390 4.390 16 H 0.087 0.913 17 C -0.192 4.192 18 N -0.542 5.542 19 Si 0.731 3.269 20 H -0.212 1.212 21 H -0.214 1.214 22 H -0.203 1.203 23 C 0.017 3.983 24 C -0.210 4.210 25 C 0.264 3.736 26 F -0.194 7.194 27 F -0.180 7.180 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.246 0.754 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.053 0.947 41 H 0.119 0.881 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.650 11.068 0.147 11.656 hybrid contribution 0.497 0.021 -1.039 1.152 sum -3.152 11.090 -0.892 11.564 Atomic orbital electron populations 1.21910 0.92400 1.02972 1.02624 1.17922 0.95961 0.94325 0.88035 1.21897 1.01841 0.93398 1.02670 1.21922 1.02040 1.00841 0.95253 1.22454 0.96655 0.94601 0.93964 1.20709 1.02962 1.02267 0.95799 1.14636 0.80845 0.78132 0.84429 1.90837 1.57234 1.62036 1.30861 1.45764 1.22727 1.51531 1.15476 1.21341 0.95248 0.96126 0.86825 1.23208 0.96899 1.02070 0.96497 0.88231 1.20889 0.88278 0.89592 0.96086 1.44078 1.24989 1.60010 1.02204 1.19175 0.91467 1.46036 0.82323 0.91253 1.25082 0.95756 1.00043 0.98348 1.70010 1.03091 1.51463 1.29641 0.86314 0.78231 0.78180 0.84179 1.21182 1.21429 1.20345 1.20918 0.97740 0.92125 0.87552 1.23047 0.93991 1.01906 1.02096 1.20995 0.90333 0.78290 0.84005 1.92960 1.95916 1.62787 1.67719 1.92968 1.70788 1.65013 1.89200 0.91956 0.91254 0.91827 0.91856 0.91199 0.91989 0.91674 0.91253 0.91702 0.75439 0.90937 0.90378 0.94739 0.88146 0.93318 0.95068 0.91244 0.90379 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.43 37.16 0.31 -0.90 16 2 C 0.04 0.37 0.95 -157.30 -0.15 0.23 16 3 C -0.14 -1.15 8.43 37.15 0.31 -0.84 16 4 C -0.14 -1.33 8.43 37.16 0.31 -1.02 16 5 C -0.07 -1.01 11.77 -37.12 -0.44 -1.45 16 6 C -0.21 -3.43 13.61 -38.84 -0.53 -3.96 16 7 C 0.63 11.30 7.65 -14.34 -0.11 11.19 16 8 O -0.53 -11.01 17.09 5.26 0.09 -10.92 16 9 N -0.70 -11.73 5.32 -62.76 -0.33 -12.07 16 10 C 0.13 2.22 4.83 -4.04 -0.02 2.20 16 11 C -0.17 -2.94 2.03 -90.50 -0.18 -3.13 16 12 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 13 C 0.18 3.86 4.19 -3.71 -0.02 3.84 16 14 N -0.59 -13.54 2.99 -172.32 -0.52 -14.06 16 15 C -0.26 -6.55 9.58 -15.06 -0.14 -6.70 16 16 H 0.07 1.70 7.89 -52.48 -0.41 1.29 16 17 C 0.01 0.18 4.92 -17.43 -0.09 0.09 16 18 N -0.90 -24.17 11.20 55.49 0.62 -23.54 16 19 Si 0.90 20.08 29.59 -169.99 -5.03 15.05 16 20 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 C 0.14 2.77 6.31 -3.71 -0.02 2.75 16 24 C -0.17 -2.79 5.62 -26.61 -0.15 -2.93 16 25 C 0.30 5.26 1.63 -26.69 -0.04 5.22 16 26 F -0.21 -3.64 16.41 2.25 0.04 -3.60 16 27 F -0.20 -3.78 15.73 2.25 0.04 -3.74 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.41 6.46 7.66 -40.82 -0.31 6.15 16 38 H 0.07 1.22 7.63 -51.93 -0.40 0.83 16 39 H 0.08 1.45 7.97 -51.93 -0.41 1.03 16 40 H 0.03 0.83 7.92 -51.93 -0.41 0.42 16 41 H 0.10 2.35 5.26 -51.93 -0.27 2.07 16 42 H 0.26 6.72 8.31 -40.82 -0.34 6.39 16 43 H 0.03 0.63 7.92 -51.93 -0.41 0.22 16 44 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 45 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 384.22 15.07 5.79 5.79 Total: -1.00 -29.56 384.22 -7.51 -37.07 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.25 Total: 5.43 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -0.95 Total: 4.59 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.23 Total: -49.67 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 9 Polarization: -7.42 SS G_CDS: 0.07 Total: -7.35 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.56 -7.51 -37.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754743869.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.359 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds