Wall clock time and date at job start Tue Mar 31 2020 14:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47190 * 2 1 4 4 C 1.53002 * 109.46792 * 240.00390 * 2 1 3 5 5 C 1.47194 * 109.47127 * 120.00508 * 2 1 3 6 6 C 2.64601 * 109.47201 * 120.00278 * 2 1 3 7 7 C 4.07801 * 109.47127 * 120.00387 * 2 1 3 8 8 O 1.21616 * 119.99930 * 297.98198 * 7 6 5 9 9 N 1.34769 * 119.99655 * 118.25837 * 7 6 5 10 10 C 1.46505 * 119.99850 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47111 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.49731 * 55.00203 * 11 10 9 13 13 C 1.53195 * 109.49865 * 294.93761 * 11 10 9 14 14 N 1.46916 * 108.77512 * 185.41183 * 13 11 10 15 15 C 1.36939 * 120.63143 * 233.63063 * 14 13 11 16 16 H 1.08004 * 119.99927 * 151.82786 * 15 14 13 17 17 C 1.38809 * 120.00103 * 331.82366 * 15 14 13 18 18 N 1.31612 * 120.00263 * 343.07808 * 17 15 14 19 19 Si 1.86807 * 119.99843 * 163.07129 * 17 15 14 20 20 H 1.48499 * 109.46641 * 90.00479 * 19 17 15 21 21 H 1.48495 * 109.46791 * 210.00278 * 19 17 15 22 22 H 1.48500 * 109.47206 * 330.00496 * 19 17 15 23 23 C 1.46927 * 118.73979 * 53.61156 * 14 13 11 24 24 C 1.53196 * 108.77627 * 306.39066 * 23 14 13 25 25 C 1.53037 * 109.49627 * 175.07112 * 11 10 9 26 26 F 1.39902 * 109.45846 * 301.33561 * 25 11 10 27 27 F 1.39896 * 109.46503 * 61.29438 * 25 11 10 28 28 H 1.09002 * 109.46866 * 299.99665 * 1 2 3 29 29 H 1.09006 * 109.46961 * 59.99591 * 1 2 3 30 30 H 1.08994 * 109.47101 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47213 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47522 * 299.99946 * 3 2 1 33 33 H 1.08999 * 109.47398 * 60.00599 * 3 2 1 34 34 H 1.09008 * 109.47070 * 299.99887 * 4 2 1 35 35 H 1.08995 * 109.47311 * 59.99815 * 4 2 1 36 36 H 1.08993 * 109.47279 * 180.02562 * 4 2 1 37 37 H 0.96996 * 120.00647 * 0.02562 * 9 7 6 38 38 H 1.08993 * 109.47642 * 300.00734 * 10 9 7 39 39 H 1.09001 * 109.46862 * 60.00992 * 10 9 7 40 40 H 1.09003 * 109.58617 * 305.20276 * 13 11 10 41 41 H 1.09006 * 109.58222 * 65.62506 * 13 11 10 42 42 H 0.96996 * 120.00662 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.58839 * 66.17645 * 23 14 13 44 44 H 1.09002 * 109.59104 * 186.45878 * 23 14 13 45 45 H 1.08993 * 109.49637 * 174.58224 * 24 23 14 46 46 H 1.08994 * 109.49385 * 294.64964 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0207 -0.6940 1.2018 6 6 2.4121 -1.2474 2.1604 7 6 2.8894 -1.9226 3.3295 8 8 2.2502 -1.8745 4.3631 9 7 4.0497 -2.6067 3.2860 10 6 4.5383 -3.2970 4.4823 11 6 5.8651 -3.9899 4.1651 12 1 6.5701 -3.2606 3.7661 13 6 5.6306 -5.0941 3.1295 14 7 6.8853 -5.8328 2.9334 15 6 7.4096 -5.9970 1.6791 16 1 8.4759 -6.1097 1.5500 17 6 6.5705 -6.0187 0.5735 18 7 5.2790 -6.2167 0.7313 19 14 7.2745 -5.7666 -1.1384 20 1 7.6578 -7.0806 -1.7143 21 1 6.2525 -5.1257 -2.0044 22 1 8.4727 -4.8932 -1.0572 23 6 7.5672 -6.3916 4.1088 24 6 7.7801 -5.2729 5.1335 25 6 6.4373 -4.6072 5.4433 26 9 6.6233 -3.6054 6.4019 27 9 5.5459 -5.5653 5.9377 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2494 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7216 -1.2492 37 1 4.5617 -2.6415 2.4630 38 1 4.6891 -2.5734 5.2833 39 1 3.8061 -4.0405 4.7973 40 1 4.8584 -5.7743 3.4890 41 1 5.3173 -4.6487 2.1852 42 1 4.6927 -6.2323 -0.0412 43 1 6.9531 -7.1776 4.5482 44 1 8.5307 -6.8047 3.8102 45 1 8.1978 -5.6925 6.0486 46 1 8.4679 -4.5322 4.7258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754743869.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:24 Heat of formation + Delta-G solvation = -99.521243 kcal Electronic energy + Delta-G solvation = -28752.996833 eV Core-core repulsion = 24507.024540 eV Total energy + Delta-G solvation = -4245.972293 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.99598 -47.94976 -40.94595 -38.97943 -38.50291 -36.39453 -34.56982 -33.61260 -32.40471 -31.55098 -28.23333 -28.22115 -27.74162 -26.99575 -24.91345 -23.97518 -22.80586 -21.93421 -21.16773 -19.81935 -18.85730 -18.31160 -17.86333 -17.24594 -16.96293 -16.80631 -16.70479 -16.53746 -15.70716 -15.51694 -15.26364 -15.24582 -15.20427 -14.79136 -14.63129 -14.35801 -14.26785 -13.84078 -13.39685 -13.35761 -13.30509 -13.24100 -13.11704 -13.01118 -12.77917 -12.64742 -12.60800 -12.33337 -12.30650 -12.26952 -12.16216 -11.88561 -11.75636 -11.66083 -11.36261 -11.28916 -11.24079 -10.59511 -10.35018 -8.80055 -7.91400 -5.38302 0.39023 1.14414 1.48956 1.52163 1.60531 1.89600 2.35776 2.49434 2.76447 3.00577 3.13984 3.22712 3.29510 3.53505 3.59449 3.89201 3.91630 3.92587 3.93666 4.05195 4.23717 4.30053 4.43133 4.54625 4.63553 4.71513 4.72493 4.73094 4.81035 4.86955 4.93158 4.93543 4.95842 5.03949 5.04631 5.14402 5.17032 5.24782 5.33271 5.34126 5.55007 5.65623 6.10968 6.20715 6.33422 6.86207 7.08139 7.75570 8.28737 9.16103 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.009183 B = 0.004236 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.414303 B = 6608.973773 C = 9059.439837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.030 3.970 3 C -0.138 4.138 4 C -0.143 4.143 5 C -0.037 4.037 6 C -0.271 4.271 7 C 0.635 3.365 8 O -0.568 6.568 9 N -0.698 5.698 10 C 0.135 3.865 11 C -0.151 4.151 12 H 0.114 0.886 13 C 0.191 3.809 14 N -0.607 5.607 15 C -0.266 4.266 16 H 0.076 0.924 17 C -0.041 4.041 18 N -0.931 5.931 19 Si 0.963 3.037 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.267 1.267 23 C 0.139 3.861 24 C -0.159 4.159 25 C 0.299 3.701 26 F -0.206 7.206 27 F -0.210 7.210 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.414 0.586 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.000 1.000 41 H 0.081 0.919 42 H 0.251 0.749 43 H 0.019 0.981 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.026 12.820 -1.576 13.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.030 3.970 3 C -0.195 4.195 4 C -0.200 4.200 5 C -0.040 4.040 6 C -0.274 4.274 7 C 0.423 3.577 8 O -0.450 6.450 9 N -0.348 5.348 10 C 0.011 3.989 11 C -0.172 4.172 12 H 0.133 0.867 13 C 0.065 3.935 14 N -0.330 5.330 15 C -0.396 4.396 16 H 0.094 0.906 17 C -0.237 4.237 18 N -0.577 5.577 19 Si 0.791 3.209 20 H -0.216 1.216 21 H -0.219 1.219 22 H -0.191 1.191 23 C 0.013 3.987 24 C -0.198 4.198 25 C 0.262 3.738 26 F -0.187 7.187 27 F -0.191 7.191 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.076 0.924 37 H 0.251 0.749 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.018 0.982 41 H 0.099 0.901 42 H 0.061 0.939 43 H 0.037 0.963 44 H 0.100 0.900 45 H 0.126 0.874 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.555 12.792 -0.917 13.077 hybrid contribution 0.154 -0.540 -0.721 0.914 sum -2.401 12.252 -1.637 12.592 Atomic orbital electron populations 1.21940 0.90991 1.02815 1.04050 1.18336 0.97055 0.95200 0.86402 1.21917 1.01657 0.91899 1.04064 1.21951 1.01625 1.00437 0.95991 1.23449 0.94268 0.92533 0.93701 1.20557 1.05510 1.04485 0.96830 1.14832 0.80534 0.77716 0.84611 1.90796 1.58216 1.63568 1.32375 1.45713 1.22574 1.51013 1.15467 1.21235 0.94560 0.95854 0.87293 1.22994 0.97448 1.00876 0.95913 0.86745 1.20548 0.87261 0.89733 0.96000 1.44329 1.25188 1.60699 1.02763 1.19525 0.91861 1.44840 0.83353 0.90626 1.25761 0.95974 1.00432 1.01517 1.70165 1.04250 1.53162 1.30076 0.85357 0.77677 0.77747 0.80133 1.21618 1.21862 1.19135 1.21044 0.97603 0.92975 0.87035 1.22949 0.93374 1.01077 1.02399 1.21074 0.90772 0.78266 0.83664 1.92973 1.95861 1.62494 1.67351 1.92956 1.71363 1.65464 1.89296 0.92187 0.88226 0.92825 0.92231 0.88306 0.92150 0.92994 0.88228 0.92421 0.74917 0.90073 0.92137 0.98205 0.90080 0.93946 0.96293 0.90040 0.87449 0.87716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.43 71.98 0.61 -1.51 16 2 C 0.03 0.55 0.95 -53.99 -0.05 0.49 16 3 C -0.14 -1.90 8.43 71.98 0.61 -1.29 16 4 C -0.14 -2.38 8.43 71.98 0.61 -1.78 16 5 C -0.04 -1.00 11.77 31.12 0.37 -0.64 16 6 C -0.27 -8.94 13.61 30.01 0.41 -8.53 16 7 C 0.63 23.65 7.65 85.49 0.65 24.30 16 8 O -0.57 -24.57 17.09 -4.08 -0.07 -24.64 16 9 N -0.70 -24.07 5.32 -470.74 -2.51 -26.58 16 10 C 0.13 4.75 4.83 86.38 0.42 5.16 16 11 C -0.15 -5.35 2.03 -10.71 -0.02 -5.37 16 12 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 13 C 0.19 8.48 4.19 86.37 0.36 8.84 16 14 N -0.61 -27.78 2.99 -699.09 -2.09 -29.88 16 15 C -0.27 -13.26 9.58 84.03 0.81 -12.46 16 16 H 0.08 3.61 7.89 -2.91 -0.02 3.59 16 17 C -0.04 -2.09 4.92 84.86 0.42 -1.67 16 18 N -0.93 -51.31 11.20 21.65 0.24 -51.07 16 19 Si 0.96 41.22 29.59 68.60 2.03 43.25 16 20 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 23 C 0.14 5.23 6.31 86.36 0.55 5.77 16 24 C -0.16 -4.80 5.62 30.67 0.17 -4.63 16 25 C 0.30 10.10 1.63 30.62 0.05 10.15 16 26 F -0.21 -6.62 16.41 44.97 0.74 -5.88 16 27 F -0.21 -7.94 15.73 44.97 0.71 -7.23 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.41 13.52 7.66 -92.71 -0.71 12.81 16 38 H 0.08 2.74 7.63 -2.39 -0.02 2.72 16 39 H 0.06 2.35 7.97 -2.39 -0.02 2.33 16 40 H 0.00 -0.01 7.92 -2.39 -0.02 -0.03 16 41 H 0.08 3.92 5.26 -2.38 -0.01 3.90 16 42 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 43 H 0.02 0.76 7.92 -2.39 -0.02 0.74 16 44 H 0.08 2.84 7.93 -2.39 -0.02 2.82 16 45 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 46 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -65.00 384.22 5.27 -59.73 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.28 Total: 25.44 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: 5.95 Total: 16.85 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -4.35 Total: -107.52 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.07 Total: -24.64 kcal Atomic # 9 Polarization: -14.56 SS G_CDS: 1.45 Total: -13.11 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -65.00 5.27 -59.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754743869.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.789 kcal (2) G-P(sol) polarization free energy of solvation -65.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds