Wall clock time and date at job start Tue Mar 31 2020 14:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32865 * 1 3 3 C 1.47119 * 120.00169 * 2 1 4 4 C 1.50703 * 119.99861 * 5.42449 * 3 2 1 5 5 C 1.32864 * 120.00177 * 185.41927 * 3 2 1 6 6 C 1.50701 * 120.00224 * 4.12480 * 5 3 2 7 7 C 1.50689 * 109.47424 * 125.40390 * 6 5 3 8 8 O 1.21281 * 120.00464 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00200 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00336 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47109 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.50467 * 54.93663 * 11 10 9 13 13 C 1.53196 * 109.49845 * 294.83689 * 11 10 9 14 14 N 1.46922 * 108.77809 * 185.41626 * 13 11 10 15 15 C 1.36944 * 120.63074 * 233.58927 * 14 13 11 16 16 H 1.07998 * 119.99579 * 30.79052 * 15 14 13 17 17 C 1.38806 * 119.99925 * 210.79196 * 15 14 13 18 18 N 1.31626 * 120.00002 * 11.54110 * 17 15 14 19 19 Si 1.86796 * 120.00140 * 191.54126 * 17 15 14 20 20 H 1.48501 * 109.46976 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47264 * 120.00083 * 19 17 15 22 22 H 1.48503 * 109.47366 * 240.00113 * 19 17 15 23 23 C 1.46932 * 118.74096 * 53.60624 * 14 13 11 24 24 C 1.53188 * 108.77160 * 306.39459 * 23 14 13 25 25 C 1.53042 * 109.49631 * 175.00094 * 11 10 9 26 26 F 1.39895 * 109.46095 * 301.33355 * 25 11 10 27 27 F 1.39894 * 109.46150 * 61.30762 * 25 11 10 28 28 H 1.07996 * 119.99936 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99743 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00171 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47134 * 269.99998 * 4 3 2 32 32 H 1.08999 * 109.46984 * 29.99530 * 4 3 2 33 33 H 1.08994 * 109.47537 * 150.00074 * 4 3 2 34 34 H 1.08006 * 120.00078 * 184.11559 * 5 3 2 35 35 H 1.09000 * 109.46805 * 5.39903 * 6 5 3 36 36 H 1.09003 * 109.46691 * 245.40429 * 6 5 3 37 37 H 0.97005 * 119.99733 * 359.97438 * 9 7 6 38 38 H 1.08996 * 109.46655 * 59.99779 * 10 9 7 39 39 H 1.09003 * 109.46569 * 300.00079 * 10 9 7 40 40 H 1.08999 * 109.58722 * 305.20439 * 13 11 10 41 41 H 1.08997 * 109.58512 * 65.63048 * 13 11 10 42 42 H 0.97003 * 120.00004 * 180.02562 * 18 17 15 43 43 H 1.08993 * 109.58826 * 186.60554 * 23 14 13 44 44 H 1.08995 * 109.58134 * 66.17875 * 23 14 13 45 45 H 1.08999 * 109.50174 * 294.67815 * 24 23 14 46 46 H 1.09008 * 109.52226 * 174.59889 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3158 2.5763 0.1234 5 6 3.3885 1.2766 -0.1087 6 6 4.1293 -0.0177 -0.3252 7 6 4.9956 0.0986 -1.5527 8 8 5.0097 1.1307 -2.1895 9 7 5.7547 -0.9444 -1.9431 10 6 6.5965 -0.8316 -3.1369 11 6 7.3486 -2.1456 -3.3565 12 1 6.6363 -2.9694 -3.4026 13 6 8.3239 -2.3764 -2.1979 14 7 9.1286 -3.5710 -2.4879 15 6 9.2051 -4.5970 -1.5841 16 1 8.3695 -4.8060 -0.9325 17 6 10.3564 -5.3683 -1.5054 18 7 11.4506 -4.9827 -2.1273 19 14 10.3532 -6.9534 -0.5171 20 1 9.0101 -7.1607 0.0814 21 1 10.6792 -8.0942 -1.4101 22 1 11.3678 -6.8650 0.5636 23 6 9.8500 -3.6439 -3.7658 24 6 8.8575 -3.3989 -4.9068 25 6 8.1310 -2.0729 -4.6699 26 9 7.2466 -1.8308 -5.7264 27 9 9.0667 -1.0354 -4.5982 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8687 -0.9353 -0.0004 31 1 1.0513 2.9388 -0.8700 32 1 0.4084 2.4199 0.7066 33 1 1.9464 3.3119 0.6225 34 1 3.9340 2.2064 -0.0420 35 1 3.4130 -0.8279 -0.4614 36 1 4.7548 -0.2278 0.5424 37 1 5.7437 -1.7698 -1.4337 38 1 7.3124 -0.0210 -3.0012 39 1 5.9705 -0.6222 -4.0043 40 1 8.9787 -1.5113 -2.0937 41 1 7.7650 -2.5277 -1.2745 42 1 12.2551 -5.5219 -2.0727 43 1 10.2979 -4.6313 -3.8768 44 1 10.6291 -2.8821 -3.7894 45 1 8.1313 -4.2112 -4.9380 46 1 9.3951 -3.3550 -5.8540 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754743901.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:51 Heat of formation + Delta-G solvation = -92.304261 kcal Electronic energy + Delta-G solvation = -28414.427884 eV Core-core repulsion = 24168.768542 eV Total energy + Delta-G solvation = -4245.659341 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.53323 -46.48521 -39.78610 -37.53699 -36.99744 -34.96973 -32.77752 -32.21170 -30.96687 -30.29992 -29.90361 -26.41737 -25.29419 -24.74066 -22.52274 -22.07727 -21.42370 -20.50470 -19.55939 -17.88598 -17.43777 -16.88720 -16.80176 -16.29922 -16.09571 -15.57912 -15.42715 -15.19926 -14.88471 -14.48648 -14.16911 -13.80566 -13.62095 -13.38893 -13.24768 -13.13301 -12.98658 -12.80010 -12.74625 -12.57702 -12.24325 -12.18763 -11.77206 -11.68174 -11.60649 -11.53479 -11.21097 -10.89905 -10.85854 -10.67837 -10.63611 -10.53104 -10.13609 -9.96464 -9.91269 -9.64059 -9.01055 -8.65668 -8.43685 -6.88141 -5.96094 -3.45782 1.13117 2.66734 2.75848 3.25600 3.26811 3.34649 3.36378 4.20632 4.34131 4.43317 4.60291 4.63868 4.67339 4.74817 4.89445 4.91189 5.11369 5.20316 5.25980 5.26133 5.31479 5.40761 5.41573 5.47001 5.53685 5.54781 5.63921 5.79676 5.91263 6.00084 6.14440 6.15349 6.21399 6.25765 6.31190 6.42122 6.42641 6.50072 6.67787 6.72037 7.10325 7.46126 7.51594 7.62042 8.24582 8.26424 9.00994 9.61775 10.18407 11.12678 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.012706 B = 0.002929 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.232438 B = 9558.266154 C =11068.524085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.114 4.114 5 C -0.114 4.114 6 C -0.121 4.121 7 C 0.516 3.484 8 O -0.541 6.541 9 N -0.724 5.724 10 C 0.125 3.875 11 C -0.155 4.155 12 H 0.101 0.899 13 C 0.153 3.847 14 N -0.591 5.591 15 C -0.261 4.261 16 H 0.069 0.931 17 C 0.008 3.992 18 N -0.901 5.901 19 Si 0.907 3.093 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.288 1.288 23 C 0.170 3.830 24 C -0.179 4.179 25 C 0.300 3.700 26 F -0.214 7.214 27 F -0.199 7.199 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.404 0.596 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.032 0.968 41 H 0.065 0.935 42 H 0.257 0.743 43 H 0.102 0.898 44 H 0.032 0.968 45 H 0.085 0.915 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.117 7.511 2.317 17.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.142 4.142 3 C -0.114 4.114 4 C -0.171 4.171 5 C -0.132 4.132 6 C -0.160 4.160 7 C 0.302 3.698 8 O -0.418 6.418 9 N -0.376 5.376 10 C 0.001 3.999 11 C -0.177 4.177 12 H 0.119 0.881 13 C 0.026 3.974 14 N -0.312 5.312 15 C -0.390 4.390 16 H 0.086 0.914 17 C -0.192 4.192 18 N -0.544 5.544 19 Si 0.737 3.263 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.215 1.215 23 C 0.044 3.956 24 C -0.219 4.219 25 C 0.263 3.737 26 F -0.195 7.195 27 F -0.180 7.180 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.136 0.864 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.239 0.761 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.050 0.950 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.120 0.880 44 H 0.050 0.950 45 H 0.104 0.896 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.916 8.193 1.846 17.995 hybrid contribution 0.162 -1.164 0.482 1.270 sum -15.754 7.029 2.328 17.407 Atomic orbital electron populations 1.24414 0.95747 1.02008 1.00056 1.21998 0.95395 0.96392 1.00461 1.20554 0.93864 0.94363 1.02574 1.20773 0.99989 0.94192 1.02119 1.22804 0.93996 0.97770 0.98649 1.20867 0.99283 0.98716 0.97150 1.20507 0.79901 0.83316 0.86063 1.90704 1.65893 1.29084 1.56071 1.45981 1.45186 1.16838 1.29642 1.21308 0.93485 0.97391 0.87726 1.22971 0.99671 0.98396 0.96619 0.88071 1.20918 0.92019 0.91233 0.93215 1.44070 1.55454 1.15701 1.16026 1.19186 0.97690 1.06985 1.15168 0.91380 1.25194 0.94737 1.00198 0.99059 1.69975 1.00731 1.37970 1.45743 0.86156 0.77641 0.83017 0.79502 1.20149 1.21438 1.21522 1.20861 0.90321 1.03328 0.81048 1.23288 1.01852 0.93552 1.03213 1.21037 0.81010 0.86856 0.84777 1.92954 1.70380 1.95555 1.60599 1.92964 1.66780 1.61633 1.96644 0.88164 0.88146 0.86426 0.91346 0.91823 0.91618 0.86156 0.87928 0.87597 0.76139 0.90729 0.91153 0.94963 0.91623 0.93321 0.87995 0.94970 0.89636 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.40 14.07 28.88 0.41 -1.00 16 2 C -0.12 -1.08 9.24 -37.83 -0.35 -1.43 16 3 C -0.11 -1.09 5.98 -102.87 -0.62 -1.70 16 4 C -0.11 -0.91 9.39 36.01 0.34 -0.57 16 5 C -0.11 -1.19 8.44 -36.16 -0.31 -1.49 16 6 C -0.12 -1.16 5.95 -29.04 -0.17 -1.33 16 7 C 0.52 6.89 7.82 -10.99 -0.09 6.80 16 8 O -0.54 -9.39 16.03 5.56 0.09 -9.31 16 9 N -0.72 -9.19 5.33 -60.30 -0.32 -9.51 16 10 C 0.13 1.89 4.83 -4.04 -0.02 1.87 16 11 C -0.16 -2.51 2.03 -90.50 -0.18 -2.69 16 12 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 13 C 0.15 2.89 5.40 -3.71 -0.02 2.87 16 14 N -0.59 -13.51 2.99 -172.33 -0.51 -14.02 16 15 C -0.26 -6.53 9.58 -15.06 -0.14 -6.67 16 16 H 0.07 1.64 7.86 -52.49 -0.41 1.23 16 17 C 0.01 0.20 5.03 -17.43 -0.09 0.11 16 18 N -0.90 -24.62 11.06 55.49 0.61 -24.01 16 19 Si 0.91 20.29 29.57 -169.99 -5.03 15.26 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.17 3.80 5.06 -3.71 -0.02 3.78 16 24 C -0.18 -3.26 5.62 -26.61 -0.15 -3.41 16 25 C 0.30 5.31 1.63 -26.69 -0.04 5.26 16 26 F -0.21 -3.72 16.40 2.25 0.04 -3.68 16 27 F -0.20 -3.84 15.73 2.25 0.04 -3.80 16 28 H 0.10 0.63 8.06 -52.49 -0.42 0.21 16 29 H 0.10 0.69 6.31 -52.49 -0.33 0.35 16 30 H 0.12 0.90 5.92 -52.49 -0.31 0.59 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.43 6.66 -51.93 -0.35 0.08 16 33 H 0.06 0.48 8.06 -51.93 -0.42 0.06 16 34 H 0.12 1.31 8.05 -52.48 -0.42 0.88 16 35 H 0.10 0.81 5.33 -51.93 -0.28 0.54 16 36 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.40 4.24 7.71 -40.82 -0.31 3.93 16 38 H 0.07 1.24 7.97 -51.93 -0.41 0.82 16 39 H 0.07 1.11 7.63 -51.93 -0.40 0.72 16 40 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 41 H 0.07 1.13 7.14 -51.93 -0.37 0.76 16 42 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 43 H 0.10 2.52 6.08 -51.93 -0.32 2.20 16 44 H 0.03 0.78 7.92 -51.93 -0.41 0.36 16 45 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 LS Contribution 376.13 15.07 5.67 5.67 Total: -1.00 -30.15 376.13 -7.69 -37.84 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.82 Total: 5.16 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -1.45 Total: 0.40 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.22 Total: -47.53 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 0.07 Total: -7.48 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.15 -7.69 -37.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754743901.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.462 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds