Wall clock time and date at job start Tue Mar 31 2020 14:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32874 * 1 3 3 C 1.47113 * 120.00293 * 2 1 4 4 C 1.50699 * 120.00009 * 5.77022 * 3 2 1 5 5 C 1.32869 * 120.00005 * 185.76774 * 3 2 1 6 6 C 1.50698 * 120.00155 * 6.17278 * 5 3 2 7 7 C 1.50694 * 109.47252 * 127.07590 * 6 5 3 8 8 O 1.21286 * 119.99934 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00209 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00320 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47431 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.49273 * 304.93529 * 11 10 9 13 13 C 1.53190 * 109.49570 * 64.99628 * 11 10 9 14 14 N 1.46924 * 108.77477 * 174.58988 * 13 11 10 15 15 C 1.36936 * 120.63205 * 126.37483 * 14 13 11 16 16 H 1.08000 * 120.00057 * 328.91326 * 15 14 13 17 17 C 1.38814 * 120.00084 * 148.92454 * 15 14 13 18 18 N 1.31621 * 119.99984 * 165.47547 * 17 15 14 19 19 Si 1.86799 * 119.99978 * 345.46482 * 17 15 14 20 20 H 1.48505 * 109.46941 * 87.21853 * 19 17 15 21 21 H 1.48501 * 109.47020 * 207.21527 * 19 17 15 22 22 H 1.48503 * 109.47196 * 327.21902 * 19 17 15 23 23 C 1.46930 * 118.73686 * 306.38896 * 14 13 11 24 24 C 1.53187 * 108.77335 * 53.61010 * 23 14 13 25 25 C 1.53034 * 109.31556 * 305.36454 * 24 23 14 26 26 F 1.39902 * 109.45854 * 301.34477 * 25 24 23 27 27 F 1.39904 * 109.46296 * 181.38572 * 25 24 23 28 28 H 1.08000 * 120.00317 * 180.02562 * 1 2 3 29 29 H 1.07999 * 119.99650 * 359.97438 * 1 2 3 30 30 H 1.08006 * 119.99420 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47510 * 270.00230 * 4 3 2 32 32 H 1.09007 * 109.47327 * 29.99977 * 4 3 2 33 33 H 1.09002 * 109.47439 * 149.99668 * 4 3 2 34 34 H 1.08002 * 119.99791 * 186.16980 * 5 3 2 35 35 H 1.08996 * 109.47070 * 247.07666 * 6 5 3 36 36 H 1.09006 * 109.47220 * 7.07787 * 6 5 3 37 37 H 0.96999 * 120.00000 * 359.97438 * 9 7 6 38 38 H 1.09002 * 109.46911 * 299.99924 * 10 9 7 39 39 H 1.08997 * 109.47258 * 59.99113 * 10 9 7 40 40 H 1.09000 * 109.59306 * 294.37440 * 13 11 10 41 41 H 1.09002 * 109.59242 * 54.80246 * 13 11 10 42 42 H 0.97005 * 120.00073 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.58774 * 173.39543 * 23 14 13 44 44 H 1.08998 * 109.58573 * 293.81947 * 23 14 13 45 45 H 1.09002 * 109.50095 * 65.31827 * 24 23 14 46 46 H 1.09004 * 109.49766 * 185.41058 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2740 0.0000 4 6 1.3167 2.5758 0.1312 5 6 3.3880 1.2768 -0.1156 6 6 4.1236 -0.0103 -0.3860 7 6 5.0148 0.1635 -1.5886 8 8 5.0498 1.2280 -2.1688 9 7 5.7732 -0.8640 -2.0196 10 6 6.6402 -0.6949 -3.1884 11 6 7.3868 -2.0017 -3.4630 12 1 7.9239 -2.3092 -2.5657 13 6 6.3838 -3.0906 -3.8568 14 7 7.1250 -4.2992 -4.2421 15 6 6.8487 -5.5044 -3.6535 16 1 6.5025 -5.5393 -2.6311 17 6 7.0140 -6.6813 -4.3709 18 7 7.0298 -7.8380 -3.7431 19 14 7.2135 -6.6233 -6.2273 20 1 8.6476 -6.4384 -6.5655 21 1 6.7259 -7.8958 -6.8175 22 1 6.4256 -5.4897 -6.7747 23 6 8.1685 -4.1902 -5.2707 24 6 9.1514 -3.0890 -4.8610 25 6 8.3809 -1.7914 -4.6074 26 9 7.6871 -1.4272 -5.7664 27 9 9.2792 -0.7754 -4.2636 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5399 0.9353 0.0004 30 1 1.8687 -0.9354 -0.0004 31 1 1.0468 2.9414 -0.8596 32 1 0.4123 2.4178 0.7188 33 1 1.9499 3.3100 0.6294 34 1 3.9368 2.2017 -0.0159 35 1 4.7302 -0.2712 0.4811 36 1 3.4042 -0.8063 -0.5790 37 1 5.7456 -1.7152 -1.5554 38 1 6.0339 -0.4333 -4.0556 39 1 7.3597 0.1007 -2.9950 40 1 5.7356 -3.3141 -3.0096 41 1 5.7828 -2.7467 -4.6986 42 1 7.1449 -8.6604 -4.2444 43 1 8.6979 -5.1392 -5.3563 44 1 7.7130 -3.9359 -6.2278 45 1 9.6725 -3.3865 -3.9510 46 1 9.8756 -2.9318 -5.6604 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754743902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:54 Heat of formation + Delta-G solvation = -85.726736 kcal Electronic energy + Delta-G solvation = -28556.171511 eV Core-core repulsion = 24310.797392 eV Total energy + Delta-G solvation = -4245.374118 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.73020 -46.68075 -39.83200 -37.79679 -37.06323 -35.12554 -32.79570 -32.24415 -31.26399 -30.70152 -30.03321 -26.68027 -25.36079 -24.90957 -22.56491 -22.07195 -21.76355 -20.53722 -19.87669 -17.87751 -17.49054 -17.10453 -16.98181 -16.41109 -16.09040 -15.76035 -15.62521 -15.29618 -15.02483 -14.72591 -14.39077 -13.89427 -13.65919 -13.57249 -13.35014 -13.24038 -13.05383 -12.92248 -12.76336 -12.56065 -12.45013 -12.27124 -12.18654 -11.96806 -11.87687 -11.77175 -11.65452 -11.01765 -10.86983 -10.76780 -10.64221 -10.40863 -10.24485 -9.97583 -9.84154 -9.60953 -9.07742 -8.82087 -8.41901 -7.19501 -6.10257 -3.56068 1.14397 2.63013 2.76886 3.18606 3.19915 3.38431 3.40157 4.02101 4.36031 4.37042 4.43542 4.46191 4.65430 4.69431 4.72155 4.80395 4.92268 5.09179 5.14618 5.24762 5.25932 5.26552 5.32186 5.42950 5.46850 5.49090 5.56604 5.68268 5.77760 5.80401 5.87333 5.94307 6.07932 6.16950 6.19972 6.24473 6.31323 6.32617 6.41578 6.51600 6.58767 6.73659 7.46482 7.76459 8.15233 8.20161 8.71110 9.51833 9.86548 11.04919 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.013132 B = 0.003127 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.621640 B = 8952.991388 C =10506.109746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.127 4.127 3 C -0.111 4.111 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.120 4.120 7 C 0.517 3.483 8 O -0.541 6.541 9 N -0.725 5.725 10 C 0.125 3.875 11 C -0.157 4.157 12 H 0.107 0.893 13 C 0.156 3.844 14 N -0.605 5.605 15 C -0.269 4.269 16 H 0.088 0.912 17 C 0.029 3.971 18 N -0.907 5.907 19 Si 0.887 3.113 20 H -0.285 1.285 21 H -0.301 1.301 22 H -0.268 1.268 23 C 0.120 3.880 24 C -0.172 4.172 25 C 0.301 3.699 26 F -0.199 7.199 27 F -0.208 7.208 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.405 0.595 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.265 0.735 43 H 0.088 0.912 44 H 0.039 0.961 45 H 0.096 0.904 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.435 15.064 6.856 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.145 4.145 3 C -0.111 4.111 4 C -0.171 4.171 5 C -0.136 4.136 6 C -0.159 4.159 7 C 0.303 3.697 8 O -0.417 6.417 9 N -0.378 5.378 10 C 0.001 3.999 11 C -0.178 4.178 12 H 0.125 0.875 13 C 0.029 3.971 14 N -0.328 5.328 15 C -0.397 4.397 16 H 0.106 0.894 17 C -0.171 4.171 18 N -0.549 5.549 19 Si 0.717 3.283 20 H -0.213 1.213 21 H -0.229 1.229 22 H -0.193 1.193 23 C -0.006 4.006 24 C -0.212 4.212 25 C 0.265 3.735 26 F -0.180 7.180 27 F -0.190 7.190 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.137 0.863 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.240 0.760 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.106 0.894 44 H 0.057 0.943 45 H 0.115 0.885 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.418 15.647 6.404 17.754 hybrid contribution 0.339 -0.451 -0.964 1.117 sum -5.079 15.196 5.440 16.921 Atomic orbital electron populations 1.24436 0.95766 1.02055 0.99715 1.22003 0.95434 0.96375 1.00653 1.20568 0.93862 0.94378 1.02265 1.20780 0.99995 0.94180 1.02139 1.22780 0.94028 0.97739 0.99049 1.20840 0.99120 0.98828 0.97128 1.20517 0.80027 0.83729 0.85396 1.90704 1.66257 1.26712 1.58075 1.45975 1.44484 1.15474 1.31837 1.21285 0.93392 0.96495 0.88709 1.22972 0.98552 0.97627 0.98668 0.87509 1.20957 0.91545 0.85303 0.99258 1.44365 1.37371 1.05572 1.45463 1.18864 1.43335 0.81245 0.96291 0.89403 1.25361 0.98805 0.95137 0.97789 1.69761 1.52025 0.97579 1.35491 0.86961 0.77509 0.76648 0.87147 1.21268 1.22908 1.19329 1.21511 0.89547 0.97219 0.92303 1.23072 0.99767 0.93719 1.04611 1.20950 0.84777 0.85279 0.82525 1.92973 1.80314 1.92910 1.51823 1.92975 1.69722 1.63774 1.92480 0.88058 0.88179 0.86332 0.91287 0.91820 0.91668 0.86238 0.87767 0.87728 0.76001 0.90706 0.90954 0.90588 0.94444 0.92462 0.89416 0.94303 0.88546 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 14.07 28.88 0.41 -1.06 16 2 C -0.13 -1.14 9.19 -37.83 -0.35 -1.49 16 3 C -0.11 -1.07 5.98 -102.87 -0.61 -1.68 16 4 C -0.11 -0.92 9.38 36.01 0.34 -0.58 16 5 C -0.12 -1.20 8.44 -36.16 -0.31 -1.51 16 6 C -0.12 -1.12 5.91 -29.04 -0.17 -1.30 16 7 C 0.52 6.66 7.82 -10.99 -0.09 6.57 16 8 O -0.54 -9.10 16.03 5.55 0.09 -9.01 16 9 N -0.73 -8.73 5.33 -60.30 -0.32 -9.05 16 10 C 0.13 1.77 4.83 -4.04 -0.02 1.75 16 11 C -0.16 -2.36 2.03 -90.50 -0.18 -2.54 16 12 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 13 C 0.16 2.74 5.40 -3.71 -0.02 2.72 16 14 N -0.60 -13.05 2.74 -172.32 -0.47 -13.52 16 15 C -0.27 -6.88 10.05 -15.06 -0.15 -7.04 16 16 H 0.09 2.37 8.06 -52.49 -0.42 1.95 16 17 C 0.03 0.79 5.32 -17.43 -0.09 0.70 16 18 N -0.91 -26.27 13.97 55.49 0.78 -25.50 16 19 Si 0.89 21.26 24.26 -169.99 -4.12 17.14 16 20 H -0.29 -6.50 6.45 56.52 0.36 -6.13 16 21 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 22 H -0.27 -6.39 6.64 56.52 0.38 -6.02 16 23 C 0.12 2.43 3.96 -3.71 -0.01 2.41 16 24 C -0.17 -2.85 5.62 -26.62 -0.15 -3.00 16 25 C 0.30 4.89 1.63 -26.69 -0.04 4.85 16 26 F -0.20 -3.50 15.73 2.25 0.04 -3.46 16 27 F -0.21 -3.34 16.41 2.25 0.04 -3.30 16 28 H 0.10 0.70 8.06 -52.49 -0.42 0.28 16 29 H 0.10 0.72 6.32 -52.49 -0.33 0.39 16 30 H 0.12 0.96 6.02 -52.48 -0.32 0.64 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.43 6.68 -51.93 -0.35 0.09 16 33 H 0.06 0.47 8.06 -51.93 -0.42 0.06 16 34 H 0.12 1.26 8.03 -52.49 -0.42 0.84 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 0.86 5.43 -51.93 -0.28 0.58 16 37 H 0.40 4.06 7.70 -40.82 -0.31 3.74 16 38 H 0.07 1.16 7.97 -51.93 -0.41 0.74 16 39 H 0.07 1.06 7.63 -51.93 -0.40 0.67 16 40 H 0.08 1.24 7.13 -51.93 -0.37 0.87 16 41 H 0.04 0.69 7.92 -51.93 -0.41 0.28 16 42 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.09 1.91 4.43 -51.93 -0.23 1.68 16 44 H 0.04 0.81 6.75 -51.93 -0.35 0.45 16 45 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 46 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 369.50 15.07 5.57 5.57 Total: -1.00 -31.13 369.50 -6.63 -37.76 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -6.76 Total: 4.57 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -1.46 Total: -1.19 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.02 Total: -48.07 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 9 Polarization: -6.83 SS G_CDS: 0.07 Total: -6.76 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.12 Total: 17.14 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.13 -6.63 -37.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754743902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.968 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds