Wall clock time and date at job start Tue Mar 31 2020 15:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86800 * 120.00227 * 2 1 4 4 H 1.48498 * 109.47121 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47137 * 300.00042 * 3 2 1 6 6 H 1.48503 * 109.46907 * 59.99701 * 3 2 1 7 7 C 1.39891 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00196 * 187.91930 * 7 2 1 9 9 C 1.41162 * 120.00132 * 7.92150 * 7 2 1 10 10 C 1.40872 * 120.16165 * 211.33309 * 9 7 2 11 11 C 1.36371 * 119.82129 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.17475 * 0.02562 * 11 10 9 13 13 N 1.39239 * 119.83262 * 179.97438 * 12 11 10 14 14 C 1.34779 * 120.00342 * 34.27772 * 13 12 11 15 15 O 1.21578 * 119.99837 * 5.17913 * 14 13 12 16 16 N 1.34783 * 119.99923 * 185.17701 * 14 13 12 17 17 C 1.47422 * 125.64849 * 4.84934 * 16 14 13 18 18 C 1.54906 * 104.82921 * 155.90732 * 17 16 14 19 19 C 1.55152 * 101.58536 * 37.01137 * 18 17 16 20 20 C 1.47018 * 125.64696 * 184.89343 * 16 14 13 21 21 H 1.09006 * 109.87891 * 300.44152 * 20 16 14 22 22 C 1.53000 * 109.88588 * 61.60357 * 20 16 14 23 23 C 1.54267 * 110.03667 * 177.58039 * 22 20 16 24 24 C 1.54882 * 104.19781 * 217.10879 * 23 22 20 25 25 C 1.54891 * 102.75076 * 37.94216 * 24 23 22 26 26 C 1.53882 * 110.02824 * 60.41589 * 22 20 16 27 27 C 1.39476 * 120.33139 * 0.24525 * 12 11 10 28 28 C 1.36384 * 120.16774 * 359.45100 * 27 12 11 29 29 H 0.97001 * 119.99851 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.08650 * 0.03713 * 10 9 7 31 31 H 1.08008 * 119.91188 * 179.97438 * 11 10 9 32 32 H 0.97000 * 120.00076 * 214.27153 * 13 12 11 33 33 H 1.09000 * 110.36927 * 274.74685 * 17 16 14 34 34 H 1.09005 * 110.36555 * 36.96147 * 17 16 14 35 35 H 1.09001 * 111.00222 * 155.08410 * 18 17 16 36 36 H 1.09000 * 111.00586 * 278.93363 * 18 17 16 37 37 H 1.09002 * 110.72032 * 206.13544 * 19 18 17 38 38 H 1.09000 * 110.72083 * 82.85569 * 19 18 17 39 39 H 1.09000 * 110.02010 * 299.02890 * 22 20 16 40 40 H 1.09005 * 110.48281 * 335.78929 * 23 22 20 41 41 H 1.08995 * 110.48152 * 98.42715 * 23 22 20 42 42 H 1.08998 * 110.75796 * 279.63106 * 24 23 22 43 43 H 1.08998 * 110.75622 * 156.25746 * 24 23 22 44 44 H 1.08996 * 110.48886 * 203.38289 * 25 24 23 45 45 H 1.08997 * 110.60048 * 80.78782 * 25 24 23 46 46 H 1.09002 * 110.02839 * 238.57179 * 26 22 20 47 47 H 1.08996 * 110.03168 * 359.94764 * 26 22 20 48 48 H 1.07998 * 119.91973 * 179.70702 * 27 12 11 49 49 H 1.07999 * 120.08406 * 180.29351 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3463 0.0006 5 1 1.8842 2.3964 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0806 -1.2160 0.1294 9 6 1.3126 -2.4283 -0.1674 10 6 1.7848 -3.6043 0.4477 11 6 1.1076 -4.7761 0.2804 12 6 -0.0495 -4.8122 -0.4977 13 7 -0.7351 -6.0126 -0.6642 14 6 -0.7791 -6.9087 0.3416 15 8 -0.3018 -6.6308 1.4246 16 7 -1.3523 -8.1129 0.1466 17 6 -1.8765 -8.6175 -1.1355 18 6 -1.8369 -10.1601 -1.0004 19 6 -2.2223 -10.3524 0.4901 20 6 -1.5590 -9.1404 1.1776 21 1 -0.6004 -9.4352 1.6046 22 6 -2.4765 -8.5986 2.2757 23 6 -2.7447 -9.6939 3.3284 24 6 -4.2234 -9.4764 3.7345 25 6 -4.8941 -9.0942 2.3917 26 6 -3.8432 -8.2174 1.6800 27 6 -0.5200 -3.6530 -1.1144 28 6 0.1430 -2.4724 -0.9513 29 1 -0.4850 0.8401 -0.0004 30 1 2.6807 -3.5780 1.0502 31 1 1.4686 -5.6788 0.7509 32 1 -1.1812 -6.2039 -1.5040 33 1 -2.9004 -8.2761 -1.2875 34 1 -1.2422 -8.2908 -1.9596 35 1 -2.5700 -10.6287 -1.6571 36 1 -0.8361 -10.5441 -1.1979 37 1 -1.8140 -11.2862 0.8767 38 1 -3.3047 -10.3222 0.6156 39 1 -2.0196 -7.7292 2.7484 40 1 -2.6105 -10.6836 2.8919 41 1 -2.0894 -9.5637 4.1896 42 1 -4.3106 -8.6632 4.4550 43 1 -4.6535 -10.3951 4.1334 44 1 -5.8074 -8.5265 2.5693 45 1 -5.1087 -9.9859 1.8027 46 1 -4.0498 -7.1631 1.8645 47 1 -3.8524 -8.4175 0.6086 48 1 -1.4140 -3.6895 -1.7193 49 1 -0.2252 -1.5747 -1.4256 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079512467.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:19 Heat of formation + Delta-G solvation = -16.926382 kcal Electronic energy + Delta-G solvation = -28289.579025 eV Core-core repulsion = 24601.417844 eV Total energy + Delta-G solvation = -3688.161181 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.65850 -38.89137 -37.28479 -36.42768 -34.35471 -32.93866 -31.39525 -30.67933 -29.49841 -28.78385 -28.58061 -26.70263 -25.02823 -23.20883 -21.90831 -21.37003 -20.84178 -20.62967 -19.59652 -18.68300 -17.62631 -17.22934 -16.86131 -16.18068 -15.75706 -15.16065 -15.06865 -14.49662 -14.34654 -13.87206 -13.82547 -13.41967 -13.30658 -13.10824 -13.05460 -12.60885 -12.42309 -12.04321 -11.86247 -11.69162 -11.47689 -11.40830 -11.25189 -11.19984 -11.14433 -11.09446 -11.00523 -10.92758 -10.71975 -10.69139 -10.59646 -10.28831 -9.92712 -9.45974 -9.42808 -9.20073 -8.85554 -8.42249 -7.48895 -6.81151 -6.61288 -4.25524 2.70199 2.92596 3.11884 3.12903 3.17854 3.18662 3.75402 4.00749 4.26673 4.37055 4.50138 4.59031 4.64423 4.72293 4.74743 4.79531 5.11323 5.20781 5.26619 5.35698 5.43216 5.50949 5.54939 5.57062 5.63180 5.65229 5.72752 5.75133 5.79276 5.79967 5.94494 6.00508 6.06373 6.21046 6.23455 6.30088 6.35387 6.46936 6.56442 6.83325 6.97200 7.10901 7.22469 7.33038 7.45039 7.68638 7.93213 8.00766 8.11883 8.35296 8.51876 8.67871 8.96774 8.98844 9.18386 10.32180 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.021041 B = 0.002622 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.400491 B =10677.172574 C =11174.461481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.071 3.929 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.102 3.898 10 C -0.206 4.206 11 C -0.083 4.083 12 C 0.024 3.976 13 N -0.666 5.666 14 C 0.714 3.286 15 O -0.572 6.572 16 N -0.636 5.636 17 C 0.098 3.902 18 C -0.131 4.131 19 C -0.131 4.131 20 C 0.167 3.833 21 H 0.071 0.929 22 C -0.105 4.105 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.117 4.117 27 C -0.121 4.121 28 C -0.141 4.141 29 H 0.277 0.723 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.390 0.610 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.253 -19.597 -1.356 21.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.099 3.901 10 C -0.226 4.226 11 C -0.103 4.103 12 C -0.069 4.069 13 N -0.312 5.312 14 C 0.417 3.583 15 O -0.449 6.449 16 N -0.376 5.376 17 C -0.026 4.026 18 C -0.169 4.169 19 C -0.169 4.169 20 C 0.062 3.938 21 H 0.089 0.911 22 C -0.124 4.124 23 C -0.155 4.155 24 C -0.162 4.162 25 C -0.161 4.161 26 C -0.154 4.154 27 C -0.141 4.141 28 C -0.161 4.161 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.223 0.777 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.107 0.893 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.027 -19.139 -0.538 21.168 hybrid contribution -0.018 0.790 -0.384 0.879 sum -9.045 -18.349 -0.922 20.478 Atomic orbital electron populations 1.69818 1.07310 1.28682 1.37599 1.25871 0.94860 1.01096 0.92621 0.86218 0.80729 0.81074 0.78380 1.18572 1.19928 1.20093 1.19531 0.95293 0.90327 1.44054 0.90566 1.17669 0.91828 0.92181 0.88395 1.20726 1.02773 0.93548 1.05578 1.20266 0.93472 0.97728 0.98807 1.17013 0.95871 0.83711 1.10257 1.42169 1.56313 1.17647 1.15095 1.15500 0.79197 0.79169 0.84404 1.90913 1.51930 1.77465 1.24570 1.47646 1.64481 1.15347 1.10102 1.22256 0.98917 0.94343 0.87068 1.22741 1.02472 0.94918 0.96791 1.22802 1.01696 0.97400 0.94958 1.21339 0.98009 0.86380 0.88034 0.91099 1.22160 0.95494 0.99343 0.95411 1.22405 0.96374 0.98462 0.98302 1.22475 0.95456 1.00944 0.97276 1.22383 0.98065 0.99318 0.96365 1.22170 0.93788 0.99615 0.99833 1.20216 0.99139 0.92116 1.02673 1.20927 0.98463 0.95690 1.01059 0.91191 0.88703 0.88025 0.77702 0.91865 0.91007 0.90073 0.90623 0.90302 0.89862 0.89473 0.91444 0.91702 0.91575 0.91863 0.92069 0.91939 0.92221 0.91603 0.89270 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.42 10.86 55.54 0.60 -20.82 16 2 C 0.07 1.83 5.28 -17.34 -0.09 1.74 16 3 Si 0.91 19.21 29.57 -169.99 -5.03 14.19 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 6 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.46 -12.54 9.04 -37.85 -0.34 -12.88 16 8 H 0.08 2.00 7.86 -52.49 -0.41 1.58 16 9 C 0.10 2.79 5.53 -106.80 -0.59 2.20 16 10 C -0.21 -5.37 9.74 -39.26 -0.38 -5.76 16 11 C -0.08 -2.05 8.57 -39.79 -0.34 -2.39 16 12 C 0.02 0.56 6.27 -83.57 -0.52 0.03 16 13 N -0.67 -12.46 5.25 -14.10 -0.07 -12.53 16 14 C 0.71 13.43 7.96 -86.91 -0.69 12.74 16 15 O -0.57 -13.18 13.29 5.30 0.07 -13.11 16 16 N -0.64 -8.76 2.61 -168.69 -0.44 -9.20 16 17 C 0.10 0.95 5.88 -2.53 -0.01 0.94 16 18 C -0.13 -0.97 7.08 -24.59 -0.17 -1.14 16 19 C -0.13 -1.05 4.73 -24.90 -0.12 -1.16 16 20 C 0.17 1.98 2.64 -66.95 -0.18 1.80 16 21 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 22 C -0.10 -1.29 2.69 -89.50 -0.24 -1.53 16 23 C -0.12 -1.14 6.18 -25.08 -0.15 -1.29 16 24 C -0.12 -1.10 6.91 -24.74 -0.17 -1.28 16 25 C -0.12 -1.11 6.55 -25.07 -0.16 -1.27 16 26 C -0.12 -1.32 5.42 -25.61 -0.14 -1.46 16 27 C -0.12 -2.83 9.89 -39.79 -0.39 -3.23 16 28 C -0.14 -3.70 8.59 -39.26 -0.34 -4.04 16 29 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 30 H 0.09 2.35 8.06 -52.49 -0.42 1.93 16 31 H 0.10 2.51 6.46 -52.48 -0.34 2.18 16 32 H 0.39 5.91 7.49 -40.82 -0.31 5.60 16 33 H 0.06 0.56 7.40 -51.93 -0.38 0.18 16 34 H 0.07 0.67 7.58 -51.93 -0.39 0.28 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.53 8.00 -51.93 -0.42 0.11 16 38 H 0.08 0.63 5.51 -51.93 -0.29 0.34 16 39 H 0.09 1.44 7.07 -51.93 -0.37 1.07 16 40 H 0.07 0.55 6.68 -51.93 -0.35 0.20 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.48 7.56 -51.93 -0.39 0.09 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.07 0.71 5.13 -51.93 -0.27 0.44 16 48 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 49 H 0.12 3.29 6.31 -52.49 -0.33 2.95 16 LS Contribution 374.45 15.07 5.64 5.64 Total: -1.00 -31.19 374.45 -11.87 -43.07 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -7.60 Total: 10.75 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -5.05 Total: -17.98 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.09 Total: -42.55 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.07 Total: -13.11 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.19 -11.87 -43.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079512467.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.140 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds