Wall clock time and date at job start Tue Mar 31 2020 16:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00455 * 2 1 4 4 H 1.48494 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47014 * 239.99611 * 3 2 1 6 6 H 1.48496 * 109.47313 * 119.99639 * 3 2 1 7 7 C 1.38819 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99723 * 139.29933 * 7 2 1 9 9 N 1.36931 * 120.00300 * 319.30052 * 7 2 1 10 10 C 1.50172 * 120.53516 * 352.84705 * 9 7 2 11 11 C 1.46237 * 107.53509 * 109.56592 * 10 9 7 12 12 C 1.52533 * 114.27420 * 58.40495 * 11 10 9 13 13 C 1.50120 * 105.41491 * 270.59638 * 12 11 10 14 14 C 1.54842 * 110.81478 * 97.68551 * 13 12 11 15 15 H 1.09006 * 109.35980 * 81.34092 * 14 13 12 16 16 N 1.46504 * 109.35713 * 200.92560 * 14 13 12 17 17 C 1.34777 * 119.99983 * 205.00095 * 16 14 13 18 18 O 1.21556 * 120.00245 * 0.02562 * 17 16 14 19 19 C 1.47852 * 120.00155 * 179.97438 * 17 16 14 20 20 C 1.39596 * 120.14304 * 0.02562 * 19 17 16 21 21 C 1.37923 * 119.85488 * 179.97438 * 20 19 17 22 22 C 1.38385 * 120.14453 * 0.02562 * 21 20 19 23 23 C 1.38332 * 120.29092 * 0.02562 * 22 21 20 24 24 C 1.50704 * 119.92914 * 179.97438 * 23 22 21 25 25 C 1.53008 * 117.49550 * 8.62116 * 24 23 22 26 26 C 1.52998 * 117.49801 * 300.00144 * 24 23 22 27 27 C 1.37982 * 120.14618 * 359.69387 * 23 22 21 28 28 C 1.43434 * 120.54010 * 172.56815 * 9 7 2 29 29 H 0.97000 * 120.00306 * 173.66020 * 1 2 3 30 30 H 1.09003 * 109.84670 * 229.07541 * 10 9 7 31 31 H 1.09005 * 109.84636 * 349.99197 * 10 9 7 32 32 H 1.08992 * 108.52313 * 179.64771 * 11 10 9 33 33 H 1.08992 * 108.52164 * 297.32809 * 11 10 9 34 34 H 1.09001 * 110.24926 * 29.57270 * 12 11 10 35 35 H 1.08995 * 110.24603 * 151.47610 * 12 11 10 36 36 H 1.09009 * 109.20655 * 218.02864 * 13 12 11 37 37 H 1.08999 * 109.21295 * 337.33997 * 13 12 11 38 38 H 0.97001 * 119.99999 * 24.99789 * 16 14 13 39 39 H 1.08008 * 120.07199 * 359.97438 * 20 19 17 40 40 H 1.08001 * 119.93069 * 180.02562 * 21 20 19 41 41 H 1.07998 * 119.85463 * 179.97438 * 22 21 20 42 42 H 1.08993 * 115.55089 * 154.32410 * 24 23 22 43 43 H 1.09001 * 117.49825 * 359.97438 * 25 24 23 44 44 H 1.08994 * 117.50024 * 145.02233 * 25 24 23 45 45 H 1.09003 * 117.50147 * 214.97957 * 26 24 23 46 46 H 1.09003 * 117.50087 * 359.97438 * 26 24 23 47 47 H 1.08001 * 120.07406 * 180.28043 * 27 23 22 48 48 H 1.09007 * 108.15424 * 33.30548 * 28 9 7 49 49 H 1.08997 * 108.16212 * 149.87211 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 -1.2124 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 2.8943 -1.3157 -0.6094 9 7 1.5739 -2.2444 0.7743 10 6 0.4447 -2.0530 1.7456 11 6 -0.7130 -2.7782 1.2239 12 6 -0.4753 -4.2700 1.0125 13 6 0.0458 -4.3962 -0.3897 14 6 1.5914 -4.4893 -0.3961 15 1 1.8927 -5.5132 -0.1745 16 7 2.0951 -4.1134 -1.7195 17 6 3.2892 -4.5740 -2.1418 18 8 3.9482 -5.3016 -1.4249 19 6 3.7973 -4.1951 -3.4776 20 6 3.0429 -3.3601 -4.3036 21 6 3.5229 -3.0101 -5.5484 22 6 4.7491 -3.4851 -5.9792 23 6 5.5012 -4.3138 -5.1660 24 6 6.8353 -4.8269 -5.6436 25 6 7.3942 -4.2403 -6.9415 26 6 6.8519 -5.6708 -6.9197 27 6 5.0353 -4.6669 -3.9162 28 6 2.1839 -3.5380 0.6659 29 1 -0.4850 -0.8349 -0.0928 30 1 0.7234 -2.4530 2.7206 31 1 0.2089 -0.9925 1.8346 32 1 -1.5417 -2.6551 1.9211 33 1 -0.9968 -2.3364 0.2689 34 1 0.2634 -4.6389 1.7241 35 1 -1.4100 -4.8200 1.1209 36 1 -0.3695 -5.2943 -0.8472 37 1 -0.2633 -3.5249 -0.9671 38 1 1.5691 -3.5331 -2.2918 39 1 2.0855 -2.9890 -3.9687 40 1 2.9404 -2.3638 -6.1883 41 1 5.1202 -3.2084 -6.9549 42 1 7.5475 -5.0853 -4.8600 43 1 6.7968 -3.4836 -7.4501 44 1 8.4744 -4.1126 -7.0120 45 1 7.5752 -6.4843 -6.9758 46 1 5.8978 -5.8552 -7.4136 47 1 5.6255 -5.3103 -3.2804 48 1 3.2404 -3.3972 0.4372 49 1 2.1146 -4.0288 1.6366 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034543708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:30 Heat of formation + Delta-G solvation = 44.204822 kcal Electronic energy + Delta-G solvation = -28553.778514 eV Core-core repulsion = 24868.268180 eV Total energy + Delta-G solvation = -3685.510334 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.19267 -39.07014 -37.89915 -36.59786 -34.48708 -33.32084 -31.51588 -31.01791 -30.75631 -29.58549 -26.10974 -24.65067 -24.09803 -23.29931 -22.69633 -22.27916 -21.37955 -20.41205 -19.36389 -19.27903 -17.61373 -17.10329 -16.16384 -16.13423 -15.55248 -15.19664 -14.98143 -14.60488 -14.37474 -14.13005 -13.87832 -13.63820 -13.59427 -13.45985 -12.76898 -12.63018 -12.43215 -12.33226 -12.11574 -11.98835 -11.82361 -11.49870 -11.09385 -11.06885 -10.85804 -10.82815 -10.63699 -10.58167 -10.39818 -10.17060 -10.02724 -9.82067 -9.75304 -9.51326 -9.43329 -8.95984 -8.70490 -8.60152 -8.13992 -6.96051 -6.17453 -3.02005 0.93391 1.32351 3.05017 3.50979 3.55312 3.58857 3.68934 3.74383 4.05996 4.35931 4.61074 4.63069 4.73464 4.80460 4.90221 5.00350 5.14532 5.14886 5.20425 5.28377 5.31037 5.38775 5.40648 5.52758 5.58253 5.69926 5.79775 5.82257 5.86068 5.93979 5.98709 5.99432 6.02547 6.24458 6.34041 6.35743 6.37837 6.41946 6.49336 6.59125 6.68443 6.68656 6.85212 6.87537 6.91223 7.09595 7.23086 7.24799 7.95810 8.03714 8.53070 8.64039 9.07711 9.85664 10.30288 11.12942 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.013276 B = 0.003564 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.538731 B = 7854.005341 C = 9148.077573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.015 4.015 3 Si 1.034 2.966 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.352 4.352 8 H 0.063 0.937 9 N -0.587 5.587 10 C 0.129 3.871 11 C -0.135 4.135 12 C -0.110 4.110 13 C -0.112 4.112 14 C 0.114 3.886 15 H 0.076 0.924 16 N -0.697 5.697 17 C 0.554 3.446 18 O -0.552 6.552 19 C -0.121 4.121 20 C -0.086 4.086 21 C -0.122 4.122 22 C -0.103 4.103 23 C -0.065 4.065 24 C -0.115 4.115 25 C -0.177 4.177 26 C -0.170 4.170 27 C -0.056 4.056 28 C 0.154 3.846 29 H 0.273 0.727 30 H 0.024 0.976 31 H 0.095 0.905 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.399 0.601 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.114 0.886 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.134 0.866 48 H 0.041 0.959 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.634 -9.574 -11.183 15.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.217 4.217 3 Si 0.864 3.136 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.479 4.479 8 H 0.081 0.919 9 N -0.308 5.308 10 C 0.005 3.995 11 C -0.174 4.174 12 C -0.148 4.148 13 C -0.150 4.150 14 C 0.007 3.993 15 H 0.094 0.906 16 N -0.346 5.346 17 C 0.341 3.659 18 O -0.432 6.432 19 C -0.124 4.124 20 C -0.105 4.105 21 C -0.140 4.140 22 C -0.121 4.121 23 C -0.065 4.065 24 C -0.133 4.133 25 C -0.214 4.214 26 C -0.207 4.207 27 C -0.075 4.075 28 C 0.023 3.977 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.113 0.887 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.234 0.766 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.132 0.868 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.152 0.848 48 H 0.060 0.940 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.912 -8.389 -10.563 14.728 hybrid contribution -0.091 -1.276 -0.521 1.381 sum 5.821 -9.665 -11.085 15.816 Atomic orbital electron populations 1.70874 1.07171 1.30551 1.45811 1.25369 0.95769 1.00525 1.00055 0.83977 0.75713 0.77542 0.76365 1.21376 1.22237 1.22329 1.19898 1.09240 0.92436 1.26353 0.91861 1.44371 1.38933 1.05025 1.42455 1.20598 0.86869 1.01565 0.90456 1.21092 0.99424 0.94535 1.02369 1.20941 0.99838 0.97472 0.96569 1.21668 0.94215 1.01128 0.97969 1.22803 0.93552 0.99402 0.83587 0.90634 1.45927 1.19780 1.50005 1.18851 1.18164 0.81513 0.80332 0.85900 1.90716 1.57360 1.38169 1.56942 1.20047 0.96408 1.00875 0.95068 1.21397 0.99554 0.95696 0.93803 1.21056 0.96247 1.00438 0.96291 1.21174 0.94456 0.96823 0.99627 1.19033 0.94901 0.98295 0.94272 1.21014 0.95769 1.04588 0.91932 1.23072 1.01170 0.96793 1.00357 1.23027 1.03112 0.94326 1.00224 1.21015 0.94288 0.97483 0.94756 1.20615 0.96272 0.86214 0.94606 0.91422 0.95820 0.88738 0.94188 0.91060 0.91723 0.92610 0.93630 0.91040 0.76603 0.85392 0.85419 0.85812 0.86765 0.88335 0.88422 0.88469 0.88593 0.84825 0.94045 0.94411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.96 11.99 55.49 0.67 -24.29 16 2 C -0.01 -0.40 4.53 -17.43 -0.08 -0.48 16 3 Si 1.03 24.63 30.06 -169.99 -5.11 19.52 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.30 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.35 -9.27 9.46 -15.06 -0.14 -9.42 16 8 H 0.06 1.76 8.05 -52.48 -0.42 1.34 16 9 N -0.59 -13.82 2.62 -175.40 -0.46 -14.28 16 10 C 0.13 2.86 5.22 -5.20 -0.03 2.83 16 11 C -0.13 -2.59 4.96 -30.18 -0.15 -2.74 16 12 C -0.11 -1.82 5.76 -28.40 -0.16 -1.98 16 13 C -0.11 -1.88 5.23 -27.19 -0.14 -2.03 16 14 C 0.11 2.11 2.91 -66.23 -0.19 1.92 16 15 H 0.08 1.40 7.57 -51.93 -0.39 1.01 16 16 N -0.70 -12.54 5.03 -53.09 -0.27 -12.81 16 17 C 0.55 10.31 7.59 -12.33 -0.09 10.22 16 18 O -0.55 -11.73 16.01 5.32 0.09 -11.65 16 19 C -0.12 -1.94 5.87 -104.97 -0.62 -2.55 16 20 C -0.09 -1.21 9.54 -39.19 -0.37 -1.58 16 21 C -0.12 -1.47 10.03 -39.64 -0.40 -1.87 16 22 C -0.10 -1.16 9.29 -39.49 -0.37 -1.53 16 23 C -0.06 -0.80 5.61 -104.68 -0.59 -1.38 16 24 C -0.11 -1.14 6.04 -91.77 -0.55 -1.69 16 25 C -0.18 -1.41 9.86 -26.73 -0.26 -1.67 16 26 C -0.17 -1.38 10.16 -26.73 -0.27 -1.65 16 27 C -0.06 -0.83 9.28 -39.19 -0.36 -1.19 16 28 C 0.15 3.26 4.75 -4.93 -0.02 3.24 16 29 H 0.27 7.31 4.95 -40.82 -0.20 7.11 16 30 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 31 H 0.09 2.38 5.61 -51.93 -0.29 2.09 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.53 4.65 -51.93 -0.24 1.29 16 34 H 0.06 1.07 6.28 -51.93 -0.33 0.74 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.07 1.34 6.58 -51.93 -0.34 1.00 16 38 H 0.40 6.84 6.48 -40.82 -0.26 6.57 16 39 H 0.13 1.72 6.41 -52.48 -0.34 1.39 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 41 H 0.12 1.10 6.00 -52.49 -0.32 0.78 16 42 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.10 0.74 6.17 -51.93 -0.32 0.42 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.13 1.97 7.65 -52.49 -0.40 1.57 16 48 H 0.04 0.98 7.81 -51.93 -0.41 0.58 16 49 H 0.04 0.76 6.89 -51.93 -0.36 0.40 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -30.00 377.38 -11.43 -41.43 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -7.22 Total: 9.95 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -4.81 Total: -13.56 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.06 Total: -51.38 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.11 Total: 19.52 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.00 -11.43 -41.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034543708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.635 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds