Wall clock time and date at job start Tue Mar 31 2020 16:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00455 * 2 1 4 4 H 1.48494 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47014 * 239.99611 * 3 2 1 6 6 H 1.48496 * 109.47313 * 119.99639 * 3 2 1 7 7 C 1.38819 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99723 * 139.29933 * 7 2 1 9 9 N 1.36931 * 120.00300 * 319.30052 * 7 2 1 10 10 C 1.50172 * 120.53516 * 352.84705 * 9 7 2 11 11 C 1.46237 * 107.53509 * 109.56592 * 10 9 7 12 12 C 1.52533 * 114.27420 * 58.40495 * 11 10 9 13 13 C 1.50120 * 105.41491 * 270.59638 * 12 11 10 14 14 C 1.54842 * 110.81478 * 97.68551 * 13 12 11 15 15 H 1.09006 * 109.35980 * 81.34092 * 14 13 12 16 16 N 1.46504 * 109.35713 * 200.92560 * 14 13 12 17 17 C 1.34777 * 119.99983 * 205.00095 * 16 14 13 18 18 O 1.21556 * 120.00245 * 0.02562 * 17 16 14 19 19 C 1.47852 * 120.00155 * 179.97438 * 17 16 14 20 20 C 1.39596 * 120.14304 * 0.02562 * 19 17 16 21 21 C 1.37923 * 119.85488 * 179.97438 * 20 19 17 22 22 C 1.38385 * 120.14453 * 0.02562 * 21 20 19 23 23 C 1.38332 * 120.29092 * 0.02562 * 22 21 20 24 24 C 1.50704 * 119.92914 * 179.97438 * 23 22 21 25 25 C 1.53008 * 117.49550 * 8.62116 * 24 23 22 26 26 C 1.52998 * 117.49801 * 300.00144 * 24 23 22 27 27 C 1.37982 * 120.14618 * 359.69387 * 23 22 21 28 28 C 1.43434 * 120.54010 * 172.56815 * 9 7 2 29 29 H 0.97000 * 120.00306 * 173.66020 * 1 2 3 30 30 H 1.09003 * 109.84670 * 229.07541 * 10 9 7 31 31 H 1.09005 * 109.84636 * 349.99197 * 10 9 7 32 32 H 1.08992 * 108.52313 * 179.64771 * 11 10 9 33 33 H 1.08992 * 108.52164 * 297.32809 * 11 10 9 34 34 H 1.09001 * 110.24926 * 29.57270 * 12 11 10 35 35 H 1.08995 * 110.24603 * 151.47610 * 12 11 10 36 36 H 1.09009 * 109.20655 * 218.02864 * 13 12 11 37 37 H 1.08999 * 109.21295 * 337.33997 * 13 12 11 38 38 H 0.97001 * 119.99999 * 24.99789 * 16 14 13 39 39 H 1.08008 * 120.07199 * 359.97438 * 20 19 17 40 40 H 1.08001 * 119.93069 * 180.02562 * 21 20 19 41 41 H 1.07998 * 119.85463 * 179.97438 * 22 21 20 42 42 H 1.08993 * 115.55089 * 154.32410 * 24 23 22 43 43 H 1.09001 * 117.49825 * 359.97438 * 25 24 23 44 44 H 1.08994 * 117.50024 * 145.02233 * 25 24 23 45 45 H 1.09003 * 117.50147 * 214.97957 * 26 24 23 46 46 H 1.09003 * 117.50087 * 359.97438 * 26 24 23 47 47 H 1.08001 * 120.07406 * 180.28043 * 27 23 22 48 48 H 1.09007 * 108.15424 * 33.30548 * 28 9 7 49 49 H 1.08997 * 108.16212 * 149.87211 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 -1.2124 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 2.8943 -1.3157 -0.6094 9 7 1.5739 -2.2444 0.7743 10 6 0.4447 -2.0530 1.7456 11 6 -0.7130 -2.7782 1.2239 12 6 -0.4753 -4.2700 1.0125 13 6 0.0458 -4.3962 -0.3897 14 6 1.5914 -4.4893 -0.3961 15 1 1.8927 -5.5132 -0.1745 16 7 2.0951 -4.1134 -1.7195 17 6 3.2892 -4.5740 -2.1418 18 8 3.9482 -5.3016 -1.4249 19 6 3.7973 -4.1951 -3.4776 20 6 3.0429 -3.3601 -4.3036 21 6 3.5229 -3.0101 -5.5484 22 6 4.7491 -3.4851 -5.9792 23 6 5.5012 -4.3138 -5.1660 24 6 6.8353 -4.8269 -5.6436 25 6 7.3942 -4.2403 -6.9415 26 6 6.8519 -5.6708 -6.9197 27 6 5.0353 -4.6669 -3.9162 28 6 2.1839 -3.5380 0.6659 29 1 -0.4850 -0.8349 -0.0928 30 1 0.7234 -2.4530 2.7206 31 1 0.2089 -0.9925 1.8346 32 1 -1.5417 -2.6551 1.9211 33 1 -0.9968 -2.3364 0.2689 34 1 0.2634 -4.6389 1.7241 35 1 -1.4100 -4.8200 1.1209 36 1 -0.3695 -5.2943 -0.8472 37 1 -0.2633 -3.5249 -0.9671 38 1 1.5691 -3.5331 -2.2918 39 1 2.0855 -2.9890 -3.9687 40 1 2.9404 -2.3638 -6.1883 41 1 5.1202 -3.2084 -6.9549 42 1 7.5475 -5.0853 -4.8600 43 1 6.7968 -3.4836 -7.4501 44 1 8.4744 -4.1126 -7.0120 45 1 7.5752 -6.4843 -6.9758 46 1 5.8978 -5.8552 -7.4136 47 1 5.6255 -5.3103 -3.2804 48 1 3.2404 -3.3972 0.4372 49 1 2.1146 -4.0288 1.6366 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034543708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:30 Heat of formation + Delta-G solvation = 29.418116 kcal Electronic energy + Delta-G solvation = -28554.419713 eV Core-core repulsion = 24868.268180 eV Total energy + Delta-G solvation = -3686.151533 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.45811 -40.33020 -39.37899 -37.49099 -36.15408 -34.95898 -33.12861 -32.37371 -31.98329 -30.96388 -27.87906 -26.10268 -25.25735 -24.76831 -23.87582 -23.16490 -22.50770 -21.94980 -20.93451 -20.56932 -19.02622 -18.72697 -17.47203 -17.26232 -16.76392 -16.58019 -16.32922 -16.14779 -15.76412 -15.56906 -15.24318 -15.13503 -14.91179 -14.68577 -14.34811 -13.98285 -13.82699 -13.74403 -13.47364 -13.16800 -12.86976 -12.77738 -12.54454 -12.45443 -12.21289 -12.19233 -12.01666 -11.93796 -11.76596 -11.63715 -11.55358 -11.34783 -11.29703 -11.19082 -10.94940 -10.40869 -10.10775 -9.91190 -9.59024 -8.86911 -8.27637 -5.07571 -0.18388 0.30262 1.58067 1.63802 1.80669 1.83405 2.20794 2.66614 2.70758 3.12642 3.13915 3.44678 3.51708 3.65886 3.78239 3.89467 3.94744 3.98897 4.07308 4.13215 4.14882 4.22541 4.32763 4.36877 4.41528 4.45378 4.53244 4.66435 4.72385 4.77746 4.86421 4.88715 4.91636 5.04205 5.05076 5.10311 5.11327 5.14011 5.25714 5.27257 5.31286 5.38599 5.39283 5.47860 5.52440 5.59310 5.61966 5.87830 5.91753 6.48912 6.54106 7.09740 7.17685 7.86937 8.31397 9.05166 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.013276 B = 0.003564 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.538731 B = 7854.005341 C = 9148.077573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.051 4.051 3 Si 1.077 2.923 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.295 1.295 7 C -0.352 4.352 8 H 0.041 0.959 9 N -0.597 5.597 10 C 0.132 3.868 11 C -0.127 4.127 12 C -0.102 4.102 13 C -0.102 4.102 14 C 0.120 3.880 15 H 0.078 0.922 16 N -0.695 5.695 17 C 0.550 3.450 18 O -0.587 6.587 19 C -0.146 4.146 20 C -0.097 4.097 21 C -0.119 4.119 22 C -0.095 4.095 23 C -0.061 4.061 24 C -0.141 4.141 25 C -0.164 4.164 26 C -0.161 4.161 27 C -0.074 4.074 28 C 0.158 3.842 29 H 0.271 0.729 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.402 0.598 39 H 0.128 0.872 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.097 0.903 47 H 0.121 0.879 48 H 0.006 0.994 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.648 -9.973 -13.102 17.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.251 4.251 3 Si 0.905 3.095 4 H -0.217 1.217 5 H -0.212 1.212 6 H -0.222 1.222 7 C -0.480 4.480 8 H 0.059 0.941 9 N -0.320 5.320 10 C 0.008 3.992 11 C -0.166 4.166 12 C -0.140 4.140 13 C -0.140 4.140 14 C 0.012 3.988 15 H 0.096 0.904 16 N -0.343 5.343 17 C 0.338 3.662 18 O -0.470 6.470 19 C -0.149 4.149 20 C -0.116 4.116 21 C -0.136 4.136 22 C -0.112 4.112 23 C -0.061 4.061 24 C -0.159 4.159 25 C -0.200 4.200 26 C -0.198 4.198 27 C -0.093 4.093 28 C 0.029 3.971 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.238 0.762 39 H 0.146 0.854 40 H 0.175 0.825 41 H 0.175 0.825 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.128 0.872 46 H 0.116 0.884 47 H 0.139 0.861 48 H 0.025 0.975 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.919 -8.803 -12.491 16.388 hybrid contribution -0.014 -1.182 0.059 1.183 sum 5.905 -9.985 -12.432 17.004 Atomic orbital electron populations 1.70907 1.07568 1.30706 1.47384 1.26187 0.96001 1.02585 1.00296 0.83357 0.74752 0.74826 0.76598 1.21686 1.21203 1.22236 1.19816 1.08181 0.93707 1.26337 0.94137 1.44396 1.39784 1.05371 1.42438 1.20558 0.87554 1.00212 0.90862 1.20928 0.98458 0.96051 1.01212 1.20936 1.01501 0.95534 0.96015 1.21593 0.92495 1.01482 0.98450 1.22627 0.94831 0.98363 0.82933 0.90370 1.45920 1.19803 1.49921 1.18698 1.18670 0.81151 0.79566 0.86783 1.90674 1.58231 1.39855 1.58253 1.19953 0.97657 1.03006 0.94297 1.21486 0.99600 0.95787 0.94716 1.21415 0.96673 1.00052 0.95498 1.21569 0.93756 0.95325 1.00582 1.19294 0.95907 0.97669 0.93208 1.21042 0.94808 1.07034 0.93024 1.23200 1.02131 0.96788 0.97896 1.23112 1.03578 0.95002 0.98102 1.21048 0.94050 0.98169 0.96048 1.20577 0.94302 0.86075 0.96178 0.91577 0.94491 0.91956 0.92425 0.93465 0.91457 0.89322 0.90888 0.93056 0.76184 0.85439 0.82537 0.82533 0.87107 0.87383 0.87093 0.87226 0.88408 0.86143 0.97532 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.82 11.99 21.65 0.26 -51.56 16 2 C -0.05 -2.80 4.53 84.86 0.38 -2.41 16 3 Si 1.08 50.60 30.06 68.60 2.06 52.66 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.35 -19.08 9.46 84.04 0.80 -18.29 16 8 H 0.04 2.35 8.05 -2.91 -0.02 2.33 16 9 N -0.60 -28.75 2.62 -708.84 -1.86 -30.61 16 10 C 0.13 5.85 5.22 83.58 0.44 6.29 16 11 C -0.13 -4.78 4.96 28.36 0.14 -4.64 16 12 C -0.10 -3.13 5.76 29.51 0.17 -2.96 16 13 C -0.10 -3.32 5.23 30.30 0.16 -3.16 16 14 C 0.12 4.47 2.91 46.09 0.13 4.60 16 15 H 0.08 2.90 7.57 -2.38 -0.02 2.88 16 16 N -0.69 -25.87 5.03 -440.16 -2.22 -28.09 16 17 C 0.55 21.49 7.59 86.79 0.66 22.15 16 18 O -0.59 -26.35 16.01 -3.89 -0.06 -26.41 16 19 C -0.15 -4.86 5.87 -20.09 -0.12 -4.98 16 20 C -0.10 -2.74 9.54 22.52 0.21 -2.53 16 21 C -0.12 -2.62 10.03 22.23 0.22 -2.40 16 22 C -0.09 -1.91 9.29 22.33 0.21 -1.70 16 23 C -0.06 -1.43 5.61 -19.90 -0.11 -1.55 16 24 C -0.14 -2.58 6.04 -11.54 -0.07 -2.65 16 25 C -0.16 -2.09 9.86 30.60 0.30 -1.79 16 26 C -0.16 -2.20 10.16 30.59 0.31 -1.89 16 27 C -0.07 -2.25 9.28 22.53 0.21 -2.04 16 28 C 0.16 6.88 4.75 87.42 0.41 7.29 16 29 H 0.27 14.85 4.95 -92.71 -0.46 14.39 16 30 H 0.04 1.52 8.13 -2.39 -0.02 1.50 16 31 H 0.06 3.19 5.61 -2.38 -0.01 3.18 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.05 2.03 4.65 -2.39 -0.01 2.02 16 34 H 0.07 2.06 6.28 -2.39 -0.01 2.05 16 35 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.05 1.91 6.58 -2.39 -0.02 1.89 16 38 H 0.40 14.29 6.48 -92.71 -0.60 13.69 16 39 H 0.13 3.50 6.41 -2.91 -0.02 3.48 16 40 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 41 H 0.16 2.12 6.00 -2.91 -0.02 2.10 16 42 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.11 1.18 6.17 -2.39 -0.01 1.16 16 44 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.12 3.84 7.65 -2.91 -0.02 3.82 16 48 H 0.01 0.32 7.81 -2.38 -0.02 0.30 16 49 H 0.05 2.01 6.89 -2.39 -0.02 1.99 16 Total: -1.00 -67.12 377.38 3.32 -63.79 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 0.68 Total: 32.87 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 4.46 Total: -12.66 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -3.81 Total: -110.25 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.06 Total: -26.41 kcal Atomic # 14 Polarization: 50.60 SS G_CDS: 2.06 Total: 52.66 kcal Total: -67.12 3.32 -63.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034543708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.210 kcal (2) G-P(sol) polarization free energy of solvation -67.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds