Wall clock time and date at job start Tue Mar 31 2020 16:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00327 * 2 1 4 4 H 1.48503 * 109.47407 * 240.00619 * 3 2 1 5 5 H 1.48504 * 109.47305 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47251 * 120.00361 * 3 2 1 7 7 C 1.38815 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00249 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99763 * 359.97438 * 7 2 1 10 10 C 1.46493 * 119.99755 * 174.37920 * 9 7 2 11 11 C 1.52997 * 110.02115 * 61.54240 * 10 9 7 12 12 N 1.46503 * 109.47110 * 55.25904 * 11 10 9 13 13 C 1.34773 * 119.99998 * 175.53859 * 12 11 10 14 14 O 1.21548 * 120.00519 * 0.02562 * 13 12 11 15 15 C 1.47846 * 119.99843 * 179.97438 * 13 12 11 16 16 C 1.39597 * 120.14328 * 0.02562 * 15 13 12 17 17 C 1.37940 * 119.85261 * 179.97438 * 16 15 13 18 18 C 1.38376 * 120.14451 * 0.04453 * 17 16 15 19 19 C 1.38343 * 120.29477 * 359.97088 * 18 17 16 20 20 C 1.50695 * 119.92866 * 179.97438 * 19 18 17 21 21 C 1.53005 * 117.49849 * 8.64272 * 20 19 18 22 22 C 1.53003 * 60.00112 * 252.51148 * 21 20 19 23 23 C 1.37980 * 120.13990 * 0.02562 * 19 18 17 24 24 C 1.54274 * 110.07168 * 182.96317 * 10 9 7 25 25 C 1.54890 * 104.19601 * 95.69529 * 24 10 9 26 26 C 1.54889 * 102.74937 * 37.93925 * 25 24 10 27 27 C 1.53882 * 110.03315 * 300.14937 * 10 9 7 28 28 H 0.96994 * 119.99450 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99825 * 354.37308 * 9 7 2 30 30 H 1.08997 * 109.47299 * 295.25969 * 11 10 9 31 31 H 1.09000 * 109.47397 * 175.25736 * 11 10 9 32 32 H 0.97005 * 119.99538 * 355.53559 * 12 11 10 33 33 H 1.08004 * 120.07710 * 359.96599 * 16 15 13 34 34 H 1.08000 * 119.92596 * 180.02562 * 17 16 15 35 35 H 1.08000 * 119.85663 * 180.02562 * 18 17 16 36 36 H 1.08997 * 115.54943 * 154.35306 * 20 19 18 37 37 H 1.08990 * 117.49978 * 0.02562 * 21 20 19 38 38 H 1.09008 * 117.49635 * 145.01827 * 21 20 19 39 39 H 1.09002 * 117.49696 * 252.51006 * 22 21 20 40 40 H 1.08994 * 117.51565 * 107.48137 * 22 21 20 41 41 H 1.07999 * 120.06899 * 179.72556 * 23 19 18 42 42 H 1.08999 * 110.48229 * 214.37558 * 24 10 9 43 43 H 1.09001 * 110.48496 * 337.01515 * 24 10 9 44 44 H 1.08999 * 110.74954 * 279.62999 * 25 24 10 45 45 H 1.09000 * 110.75589 * 156.25612 * 25 24 10 46 46 H 1.09001 * 110.48786 * 203.37498 * 26 25 24 47 47 H 1.09005 * 110.48237 * 80.73806 * 26 25 24 48 48 H 1.08999 * 110.03044 * 359.95783 * 27 10 9 49 49 H 1.09006 * 110.03076 * 121.38152 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2854 2.7465 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0526 -3.6537 -0.1254 11 6 3.0121 -3.8251 1.0540 12 7 2.2663 -3.7149 2.3102 13 6 2.8919 -3.9230 3.4857 14 8 4.0749 -4.2017 3.5037 15 6 2.1394 -3.8113 4.7534 16 6 0.7808 -3.4909 4.7363 17 6 0.0845 -3.3887 5.9227 18 6 0.7300 -3.6021 7.1279 19 6 2.0763 -3.9196 7.1519 20 6 2.7711 -4.1497 8.4692 21 6 1.8997 -4.2185 9.7250 22 6 2.7830 -2.9949 9.4728 23 6 2.7844 -4.0250 5.9724 24 6 1.0588 -4.8327 -0.1738 25 6 0.8676 -5.1064 -1.6863 26 6 2.2895 -4.8797 -2.2572 27 6 2.8351 -3.6837 -1.4501 28 1 -0.4849 0.8400 0.0004 29 1 0.3591 -2.3901 0.0822 30 1 3.7766 -3.0492 1.0161 31 1 3.4859 -4.8051 0.9975 32 1 1.3223 -3.4922 2.2958 33 1 0.2760 -3.3233 3.7963 34 1 -0.9667 -3.1414 5.9108 35 1 0.1802 -3.5213 8.0540 36 1 3.6508 -4.7921 8.4307 37 1 0.8240 -4.0978 9.5983 38 1 2.2060 -4.9066 10.5130 39 1 3.6703 -2.8779 10.0950 40 1 2.2886 -2.0686 9.1802 41 1 3.8363 -4.2685 5.9927 42 1 1.4802 -5.7073 0.3218 43 1 0.1112 -4.5521 0.2859 44 1 0.1600 -4.3998 -2.1201 45 1 0.5426 -6.1330 -1.8551 46 1 2.2399 -4.6334 -3.3179 47 1 2.9095 -5.7620 -2.0980 48 1 2.6731 -2.7569 -2.0004 49 1 3.8984 -3.8203 -1.2527 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753670481.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:25 Heat of formation + Delta-G solvation = 14.343112 kcal Electronic energy + Delta-G solvation = -27981.006950 eV Core-core repulsion = 24294.201716 eV Total energy + Delta-G solvation = -3686.805234 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.14895 -39.02546 -38.04201 -36.58466 -34.14729 -33.33413 -31.20849 -30.94748 -30.31290 -28.30415 -27.76867 -24.88274 -24.12924 -23.35843 -22.75985 -22.26730 -21.32681 -20.34134 -19.42294 -18.57922 -17.61134 -17.03117 -16.15566 -16.10456 -15.60982 -15.25473 -14.89916 -14.59648 -14.51657 -14.21134 -14.01525 -13.75143 -13.49041 -13.22097 -13.13215 -12.67731 -12.59282 -12.25225 -11.98583 -11.88845 -11.55934 -11.47904 -11.07678 -11.01529 -10.81839 -10.80638 -10.69246 -10.62819 -10.58666 -10.52322 -10.38244 -10.07927 -9.86751 -9.66422 -9.52145 -8.94446 -8.93425 -8.64256 -8.40157 -7.04089 -5.82747 -3.12086 0.94932 1.33835 3.06544 3.41844 3.46465 3.48192 3.64384 3.65944 4.08027 4.37962 4.55430 4.64556 4.75036 4.82365 4.91607 5.02636 5.08899 5.11524 5.22643 5.23528 5.29964 5.40446 5.55102 5.56370 5.60056 5.66300 5.74717 5.82292 5.83938 5.88465 5.96226 5.98178 6.01403 6.09690 6.15036 6.24743 6.31857 6.39416 6.39534 6.45152 6.51088 6.57192 6.61603 6.72950 6.82654 6.88106 6.99632 7.13480 7.70435 8.04771 8.36074 8.66334 9.47796 10.01188 10.36983 11.39115 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.011270 B = 0.003424 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.980137 B = 8175.540032 C = 9508.700608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.007 4.007 3 Si 0.901 3.099 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.712 5.712 10 C 0.188 3.812 11 C 0.118 3.882 12 N -0.694 5.694 13 C 0.551 3.449 14 O -0.555 6.555 15 C -0.121 4.121 16 C -0.085 4.085 17 C -0.122 4.122 18 C -0.103 4.103 19 C -0.066 4.066 20 C -0.115 4.115 21 C -0.178 4.178 22 C -0.170 4.170 23 C -0.057 4.057 24 C -0.123 4.123 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.130 4.130 28 H 0.255 0.745 29 H 0.384 0.616 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.403 0.597 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.134 0.866 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.083 0.917 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.127 -11.204 12.061 16.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.203 4.203 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.354 5.354 10 C 0.096 3.904 11 C -0.008 4.008 12 N -0.343 5.343 13 C 0.337 3.663 14 O -0.435 6.435 15 C -0.125 4.125 16 C -0.104 4.104 17 C -0.140 4.140 18 C -0.121 4.121 19 C -0.066 4.066 20 C -0.133 4.133 21 C -0.214 4.214 22 C -0.207 4.207 23 C -0.076 4.076 24 C -0.161 4.161 25 C -0.157 4.157 26 C -0.158 4.158 27 C -0.170 4.170 28 H 0.065 0.935 29 H 0.218 0.782 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.240 0.760 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.152 0.848 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.101 0.899 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.803 -11.227 12.006 16.457 hybrid contribution -0.258 1.285 -0.053 1.312 sum 0.545 -9.942 11.953 15.557 Atomic orbital electron populations 1.69638 1.05002 1.25763 1.57485 1.24688 0.95410 0.97496 1.02732 0.86364 0.78658 0.83836 0.77935 1.21255 1.21763 1.21320 1.19054 0.90995 0.83801 1.42713 0.91302 1.42537 1.06038 0.99484 1.87312 1.20460 0.91043 0.87296 0.91607 1.21979 0.95279 1.00097 0.83439 1.45715 1.14316 1.68957 1.05357 1.18216 0.86743 0.77521 0.83794 1.90714 1.15466 1.49670 1.87640 1.20044 0.94276 1.04231 0.93900 1.21442 0.93272 0.96614 0.99044 1.21070 1.00278 1.00667 0.91998 1.21178 0.94049 0.98701 0.98163 1.19033 0.93557 1.00882 0.93111 1.21007 1.01345 1.03075 0.87879 1.23067 0.98101 1.01373 0.98901 1.23040 1.02365 0.93324 1.01949 1.21012 1.00206 0.96222 0.90174 1.22586 0.99353 0.97621 0.96561 1.22413 0.97347 1.00188 0.95706 1.22307 0.96244 0.98145 0.99129 1.22660 0.98484 0.98885 0.96952 0.93508 0.78178 0.91799 0.92558 0.76015 0.85157 0.85367 0.85835 0.86814 0.88355 0.88482 0.88444 0.88481 0.84849 0.91781 0.91607 0.91251 0.92601 0.92437 0.92585 0.89882 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.42 13.07 55.49 0.73 -25.70 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.90 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 7 C -0.23 -6.01 8.52 -15.05 -0.13 -6.14 16 8 H 0.07 1.79 7.27 -52.49 -0.38 1.41 16 9 N -0.71 -15.81 4.53 -46.19 -0.21 -16.02 16 10 C 0.19 3.40 0.68 -130.70 -0.09 3.31 16 11 C 0.12 2.19 4.04 -4.04 -0.02 2.17 16 12 N -0.69 -12.44 5.18 -61.25 -0.32 -12.75 16 13 C 0.55 10.21 7.77 -12.33 -0.10 10.11 16 14 O -0.55 -11.79 16.35 5.32 0.09 -11.70 16 15 C -0.12 -1.93 5.87 -104.97 -0.62 -2.54 16 16 C -0.08 -1.19 9.54 -39.18 -0.37 -1.56 16 17 C -0.12 -1.45 10.03 -39.64 -0.40 -1.85 16 18 C -0.10 -1.15 9.29 -39.49 -0.37 -1.52 16 19 C -0.07 -0.80 5.61 -104.68 -0.59 -1.38 16 20 C -0.12 -1.12 6.04 -91.77 -0.55 -1.67 16 21 C -0.18 -1.38 9.86 -26.73 -0.26 -1.64 16 22 C -0.17 -1.44 10.16 -26.73 -0.27 -1.71 16 23 C -0.06 -0.83 9.28 -39.19 -0.36 -1.19 16 24 C -0.12 -1.88 5.72 -25.07 -0.14 -2.03 16 25 C -0.12 -1.71 6.91 -24.74 -0.17 -1.88 16 26 C -0.12 -1.75 6.83 -25.08 -0.17 -1.92 16 27 C -0.13 -2.26 5.93 -25.61 -0.15 -2.41 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.38 9.08 7.45 -40.82 -0.30 8.77 16 30 H 0.06 1.34 7.46 -51.93 -0.39 0.96 16 31 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 32 H 0.40 6.94 6.03 -40.82 -0.25 6.69 16 33 H 0.13 1.77 6.41 -52.48 -0.34 1.43 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.12 1.08 6.00 -52.49 -0.32 0.77 16 36 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.10 0.71 6.17 -51.93 -0.32 0.39 16 38 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.13 1.94 7.65 -52.49 -0.40 1.54 16 42 H 0.06 0.91 7.79 -51.93 -0.40 0.50 16 43 H 0.07 1.01 7.72 -51.93 -0.40 0.61 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.08 1.68 7.36 -51.93 -0.38 1.29 16 49 H 0.05 0.86 7.67 -51.93 -0.40 0.46 16 LS Contribution 392.10 15.07 5.91 5.91 Total: -1.00 -29.89 392.10 -11.32 -41.22 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -7.64 Total: 16.17 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -4.86 Total: -14.14 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.20 Total: -54.47 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.89 -11.32 -41.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753670481.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.559 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds