Wall clock time and date at job start Tue Mar 31 2020 16:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38386 * 119.85272 * 2 1 4 4 C 1.37937 * 120.14330 * 179.75804 * 3 2 1 5 5 C 1.39592 * 119.85174 * 0.53526 * 4 3 2 6 6 C 1.47844 * 120.14411 * 179.73964 * 5 4 3 7 7 O 1.21559 * 120.00055 * 125.69971 * 6 5 4 8 8 N 1.34779 * 120.00315 * 305.70512 * 6 5 4 9 9 C 1.46887 * 120.46312 * 174.32560 * 8 6 5 10 10 C 1.53362 * 108.73995 * 124.38767 * 9 8 6 11 11 C 1.52558 * 109.12597 * 52.26205 * 10 9 8 12 12 C 1.52956 * 114.06319 * 75.53665 * 11 10 9 13 13 N 1.47165 * 87.85324 * 139.44207 * 12 11 10 14 14 C 1.36931 * 136.00386 * 153.07969 * 13 12 11 15 15 H 1.08000 * 119.99709 * 0.02562 * 14 13 12 16 16 C 1.38813 * 120.00344 * 180.02562 * 14 13 12 17 17 N 1.31615 * 119.99910 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99996 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47572 * 89.99934 * 18 16 14 20 20 H 1.48505 * 109.46962 * 210.00062 * 18 16 14 21 21 H 1.48503 * 109.47078 * 329.99383 * 18 16 14 22 22 C 1.47169 * 87.99624 * 333.33645 * 13 12 11 23 23 C 1.52550 * 113.42801 * 302.66818 * 11 10 9 24 24 C 1.46892 * 120.45944 * 354.34996 * 8 6 5 25 25 C 1.39556 * 119.71111 * 359.46768 * 5 4 3 26 26 C 1.50703 * 120.06898 * 180.27261 * 25 5 4 27 27 C 1.37977 * 119.85470 * 0.25213 * 25 5 4 28 28 H 1.09000 * 109.47438 * 269.97845 * 1 2 3 29 29 H 1.08999 * 109.47039 * 29.98464 * 1 2 3 30 30 H 1.09000 * 109.46811 * 149.97717 * 1 2 3 31 31 H 1.07999 * 119.92672 * 0.04233 * 3 2 1 32 32 H 1.07994 * 120.07227 * 180.27300 * 4 3 2 33 33 H 1.08998 * 109.59692 * 4.61183 * 9 8 6 34 34 H 1.09000 * 109.59346 * 244.16391 * 9 8 6 35 35 H 1.09003 * 109.52607 * 292.36647 * 10 9 8 36 36 H 1.08999 * 109.58636 * 172.18960 * 10 9 8 37 37 H 1.09003 * 113.48668 * 24.70087 * 12 11 10 38 38 H 1.08998 * 113.49058 * 254.18722 * 12 11 10 39 39 H 0.97005 * 120.00472 * 179.97438 * 17 16 14 40 40 H 1.09005 * 113.48933 * 141.41483 * 22 13 12 41 41 H 1.08995 * 113.49524 * 271.91456 * 22 13 12 42 42 H 1.09002 * 109.52635 * 177.21958 * 23 11 10 43 43 H 1.08999 * 109.53163 * 297.42328 * 23 11 10 44 44 H 1.09001 * 109.59057 * 355.38406 * 24 8 6 45 45 H 1.08998 * 109.58999 * 115.82515 * 24 8 6 46 46 H 1.09006 * 109.46964 * 94.90147 * 26 25 5 47 47 H 1.09009 * 109.46965 * 214.89076 * 26 25 5 48 48 H 1.08993 * 109.47588 * 334.89374 * 26 25 5 49 49 H 1.07999 * 119.92523 * 179.97438 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5752 1.2072 0.0050 5 6 4.2762 0.0001 -0.0012 6 6 5.7547 0.0001 -0.0016 7 8 6.3627 -0.6184 0.8500 8 7 6.4283 0.6860 -0.9462 9 6 7.8918 0.7960 -0.8852 10 6 8.4801 0.2812 -2.2046 11 6 7.7977 0.9942 -3.3680 12 6 8.2649 2.4356 -3.5765 13 7 8.2342 2.1775 -5.0251 14 6 8.0622 2.9297 -6.1562 15 1 7.9011 3.9947 -6.0772 16 6 8.0948 2.3235 -7.4046 17 7 8.2915 1.0257 -7.5010 18 14 7.8608 3.3499 -8.9477 19 1 9.1807 3.8354 -9.4242 20 1 7.2283 2.5190 -10.0036 21 1 6.9871 4.5111 -8.6421 22 6 8.4630 0.7552 -4.7242 23 6 6.2818 0.8237 -3.3787 24 6 5.7091 1.3343 -2.0509 25 6 3.5754 -1.2067 -0.0012 26 6 4.3240 -2.5146 -0.0016 27 6 2.1956 -1.1997 -0.0003 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6523 2.1334 0.0007 32 1 4.1116 2.1445 0.0095 33 1 8.2694 0.1954 -0.0577 34 1 8.1743 1.8389 -0.7413 35 1 8.3101 -0.7924 -2.2850 36 1 9.5508 0.4836 -2.2309 37 1 9.2660 2.6279 -3.1907 38 1 7.5371 3.1794 -3.2523 39 1 8.3139 0.6020 -8.3733 40 1 7.9026 0.0789 -5.3698 41 1 9.5178 0.4909 -4.6501 42 1 5.8565 1.3963 -4.2030 43 1 6.0345 -0.2308 -3.5006 44 1 4.6490 1.0881 -1.9911 45 1 5.8398 2.4146 -1.9878 46 1 4.4286 -2.8738 1.0222 47 1 3.7727 -3.2487 -0.5895 48 1 5.3120 -2.3677 -0.4379 49 1 1.6521 -2.1330 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035847310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:07 Heat of formation + Delta-G solvation = 40.960167 kcal Electronic energy + Delta-G solvation = -28631.138160 eV Core-core repulsion = 24945.487127 eV Total energy + Delta-G solvation = -3685.651032 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.76333 -39.47522 -38.32138 -35.78108 -33.66935 -32.77143 -32.20372 -30.92489 -30.34968 -27.82991 -27.33609 -26.63276 -24.87696 -23.77158 -23.20507 -22.50336 -21.67396 -20.83818 -19.54959 -17.98595 -16.83207 -16.67783 -16.33931 -15.80904 -15.29652 -14.87422 -14.74015 -14.68175 -14.46477 -14.12799 -13.79003 -13.62392 -13.46995 -13.35797 -13.31097 -13.06243 -12.67687 -12.51114 -12.24826 -12.21956 -12.11972 -11.70226 -11.66127 -11.62041 -11.19514 -11.07763 -11.00071 -10.86445 -10.80547 -10.39218 -10.25198 -9.75308 -9.71822 -9.59106 -9.19553 -8.95154 -8.79890 -8.73813 -8.38527 -6.86119 -5.76336 -3.08228 0.86840 1.18395 2.69089 3.06832 3.38234 3.43058 3.45114 3.55675 4.43034 4.45625 4.55753 4.64516 4.68403 5.02146 5.06286 5.08290 5.09789 5.17557 5.31015 5.31949 5.37687 5.40393 5.45824 5.50185 5.56070 5.58632 5.64089 5.68560 5.71553 5.81791 5.86811 5.89433 6.01764 6.05214 6.12945 6.18740 6.28329 6.32969 6.36062 6.36641 6.52569 6.61705 6.65390 6.73888 6.81987 6.85397 7.23348 7.37030 7.49022 7.57543 7.98317 8.19922 9.04243 9.70957 10.66288 11.41029 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014699 B = 0.003179 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.475234 B = 8804.435751 C = 9823.252158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.067 4.067 3 C -0.131 4.131 4 C -0.079 4.079 5 C -0.129 4.129 6 C 0.562 3.438 7 O -0.542 6.542 8 N -0.598 5.598 9 C 0.115 3.885 10 C -0.113 4.113 11 C -0.115 4.115 12 C 0.127 3.873 13 N -0.608 5.608 14 C -0.216 4.216 15 H 0.079 0.921 16 C -0.008 4.008 17 N -0.919 5.919 18 Si 0.910 3.090 19 H -0.290 1.290 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.167 3.833 23 C -0.093 4.093 24 C 0.105 3.895 25 C -0.034 4.034 26 C -0.117 4.117 27 C -0.127 4.127 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.030 0.970 38 H 0.036 0.964 39 H 0.253 0.747 40 H 0.069 0.931 41 H 0.023 0.977 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.070 0.930 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.668 -3.201 16.582 21.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.067 4.067 3 C -0.149 4.149 4 C -0.098 4.098 5 C -0.132 4.132 6 C 0.350 3.650 7 O -0.421 6.421 8 N -0.330 5.330 9 C -0.007 4.007 10 C -0.152 4.152 11 C -0.116 4.116 12 C 0.001 3.999 13 N -0.334 5.334 14 C -0.344 4.344 15 H 0.097 0.903 16 C -0.204 4.204 17 N -0.566 5.566 18 Si 0.741 3.259 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.206 1.206 22 C 0.041 3.959 23 C -0.131 4.131 24 C -0.017 4.017 25 C -0.035 4.035 26 C -0.173 4.173 27 C -0.145 4.145 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.041 0.959 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.102 0.898 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.089 0.911 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.358 -3.438 16.634 21.005 hybrid contribution 0.135 0.688 -1.061 1.272 sum -12.223 -2.751 15.572 19.987 Atomic orbital electron populations 1.20838 0.90980 1.03072 1.02434 1.20061 0.96216 0.93067 0.97360 1.20941 0.93743 0.97769 1.02488 1.21229 0.94316 0.96930 0.97317 1.19770 0.93026 0.94085 1.06332 1.18341 0.86968 0.78432 0.81280 1.90754 1.69655 1.43188 1.38465 1.48079 1.07666 1.52036 1.25215 1.21650 0.78576 1.01457 0.99055 1.21725 0.99769 1.00245 0.93484 1.22078 0.95088 0.97939 0.96516 1.22394 0.96979 0.93730 0.86786 1.45567 1.83372 1.04797 0.99622 1.18913 1.42108 0.90718 0.82629 0.90285 1.24771 1.02413 0.96003 0.97248 1.69828 1.55592 1.08267 1.22930 0.86149 0.77685 0.78996 0.83107 1.21694 1.21654 1.20635 1.22033 0.96070 0.88595 0.89213 1.21404 0.94343 1.01354 0.96025 1.21976 0.96303 0.97223 0.86191 1.19890 0.93482 0.94415 0.95665 1.20848 1.00235 0.93353 1.02877 1.20842 0.93032 0.97846 1.02787 0.90989 0.91269 0.91352 0.85534 0.85412 0.89380 0.91386 0.91815 0.90734 0.95226 0.94599 0.93709 0.91226 0.95882 0.89319 0.92138 0.89809 0.91181 0.90444 0.91403 0.91117 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.01 36.01 0.36 -0.39 16 2 C -0.07 -0.62 5.89 -104.53 -0.62 -1.23 16 3 C -0.13 -1.25 9.68 -39.64 -0.38 -1.63 16 4 C -0.08 -0.87 7.75 -39.19 -0.30 -1.18 16 5 C -0.13 -1.67 4.61 -104.97 -0.48 -2.15 16 6 C 0.56 8.34 6.08 -12.33 -0.07 8.27 16 7 O -0.54 -9.46 15.35 5.31 0.08 -9.38 16 8 N -0.60 -8.40 2.94 -173.74 -0.51 -8.91 16 9 C 0.11 1.58 6.35 -3.64 -0.02 1.56 16 10 C -0.11 -1.70 5.30 -26.77 -0.14 -1.85 16 11 C -0.11 -2.04 0.84 -155.02 -0.13 -2.17 16 12 C 0.13 2.51 7.63 -8.21 -0.06 2.45 16 13 N -0.61 -15.20 3.55 -184.68 -0.66 -15.86 16 14 C -0.22 -5.97 10.74 -15.06 -0.16 -6.13 16 15 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 16 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 17 N -0.92 -27.05 11.51 55.49 0.64 -26.41 16 18 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.17 3.84 6.54 -8.22 -0.05 3.78 16 23 C -0.09 -1.54 5.27 -26.78 -0.14 -1.69 16 24 C 0.11 1.43 5.53 -3.65 -0.02 1.41 16 25 C -0.03 -0.40 5.91 -104.22 -0.62 -1.02 16 26 C -0.12 -1.32 9.26 36.01 0.33 -0.99 16 27 C -0.13 -1.27 9.36 -39.64 -0.37 -1.64 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.13 1.26 7.77 -52.49 -0.41 0.86 16 33 H 0.09 1.24 6.97 -51.93 -0.36 0.88 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 37 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 38 H 0.04 0.67 7.53 -51.93 -0.39 0.28 16 39 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.07 1.80 7.11 -51.93 -0.37 1.43 16 41 H 0.02 0.55 8.09 -51.93 -0.42 0.13 16 42 H 0.09 1.69 7.95 -51.93 -0.41 1.27 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.08 1.05 5.27 -51.93 -0.27 0.78 16 45 H 0.07 0.91 7.60 -51.93 -0.39 0.51 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.07 0.62 8.12 -51.92 -0.42 0.20 16 48 H 0.07 0.94 6.57 -51.93 -0.34 0.59 16 49 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 384.73 15.07 5.80 5.80 Total: -1.00 -32.16 384.73 -10.63 -42.80 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -7.98 Total: -0.03 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -2.98 Total: -4.92 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.53 Total: -51.18 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.16 -10.63 -42.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035847310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.758 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds