Wall clock time and date at job start Tue Mar 31 2020 16:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38386 * 119.85272 * 2 1 4 4 C 1.37937 * 120.14330 * 179.75804 * 3 2 1 5 5 C 1.39592 * 119.85174 * 0.53526 * 4 3 2 6 6 C 1.47844 * 120.14411 * 179.73964 * 5 4 3 7 7 O 1.21559 * 120.00055 * 125.69971 * 6 5 4 8 8 N 1.34779 * 120.00315 * 305.70512 * 6 5 4 9 9 C 1.46887 * 120.46312 * 174.32560 * 8 6 5 10 10 C 1.53362 * 108.73995 * 124.38767 * 9 8 6 11 11 C 1.52558 * 109.12597 * 52.26205 * 10 9 8 12 12 C 1.52956 * 114.06319 * 75.53665 * 11 10 9 13 13 N 1.47165 * 87.85324 * 139.44207 * 12 11 10 14 14 C 1.36931 * 136.00386 * 153.07969 * 13 12 11 15 15 H 1.08000 * 119.99709 * 0.02562 * 14 13 12 16 16 C 1.38813 * 120.00344 * 180.02562 * 14 13 12 17 17 N 1.31615 * 119.99910 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99996 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47572 * 89.99934 * 18 16 14 20 20 H 1.48505 * 109.46962 * 210.00062 * 18 16 14 21 21 H 1.48503 * 109.47078 * 329.99383 * 18 16 14 22 22 C 1.47169 * 87.99624 * 333.33645 * 13 12 11 23 23 C 1.52550 * 113.42801 * 302.66818 * 11 10 9 24 24 C 1.46892 * 120.45944 * 354.34996 * 8 6 5 25 25 C 1.39556 * 119.71111 * 359.46768 * 5 4 3 26 26 C 1.50703 * 120.06898 * 180.27261 * 25 5 4 27 27 C 1.37977 * 119.85470 * 0.25213 * 25 5 4 28 28 H 1.09000 * 109.47438 * 269.97845 * 1 2 3 29 29 H 1.08999 * 109.47039 * 29.98464 * 1 2 3 30 30 H 1.09000 * 109.46811 * 149.97717 * 1 2 3 31 31 H 1.07999 * 119.92672 * 0.04233 * 3 2 1 32 32 H 1.07994 * 120.07227 * 180.27300 * 4 3 2 33 33 H 1.08998 * 109.59692 * 4.61183 * 9 8 6 34 34 H 1.09000 * 109.59346 * 244.16391 * 9 8 6 35 35 H 1.09003 * 109.52607 * 292.36647 * 10 9 8 36 36 H 1.08999 * 109.58636 * 172.18960 * 10 9 8 37 37 H 1.09003 * 113.48668 * 24.70087 * 12 11 10 38 38 H 1.08998 * 113.49058 * 254.18722 * 12 11 10 39 39 H 0.97005 * 120.00472 * 179.97438 * 17 16 14 40 40 H 1.09005 * 113.48933 * 141.41483 * 22 13 12 41 41 H 1.08995 * 113.49524 * 271.91456 * 22 13 12 42 42 H 1.09002 * 109.52635 * 177.21958 * 23 11 10 43 43 H 1.08999 * 109.53163 * 297.42328 * 23 11 10 44 44 H 1.09001 * 109.59057 * 355.38406 * 24 8 6 45 45 H 1.08998 * 109.58999 * 115.82515 * 24 8 6 46 46 H 1.09006 * 109.46964 * 94.90147 * 26 25 5 47 47 H 1.09009 * 109.46965 * 214.89076 * 26 25 5 48 48 H 1.08993 * 109.47588 * 334.89374 * 26 25 5 49 49 H 1.07999 * 119.92523 * 179.97438 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5752 1.2072 0.0050 5 6 4.2762 0.0001 -0.0012 6 6 5.7547 0.0001 -0.0016 7 8 6.3627 -0.6184 0.8500 8 7 6.4283 0.6860 -0.9462 9 6 7.8918 0.7960 -0.8852 10 6 8.4801 0.2812 -2.2046 11 6 7.7977 0.9942 -3.3680 12 6 8.2649 2.4356 -3.5765 13 7 8.2342 2.1775 -5.0251 14 6 8.0622 2.9297 -6.1562 15 1 7.9011 3.9947 -6.0772 16 6 8.0948 2.3235 -7.4046 17 7 8.2915 1.0257 -7.5010 18 14 7.8608 3.3499 -8.9477 19 1 9.1807 3.8354 -9.4242 20 1 7.2283 2.5190 -10.0036 21 1 6.9871 4.5111 -8.6421 22 6 8.4630 0.7552 -4.7242 23 6 6.2818 0.8237 -3.3787 24 6 5.7091 1.3343 -2.0509 25 6 3.5754 -1.2067 -0.0012 26 6 4.3240 -2.5146 -0.0016 27 6 2.1956 -1.1997 -0.0003 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6523 2.1334 0.0007 32 1 4.1116 2.1445 0.0095 33 1 8.2694 0.1954 -0.0577 34 1 8.1743 1.8389 -0.7413 35 1 8.3101 -0.7924 -2.2850 36 1 9.5508 0.4836 -2.2309 37 1 9.2660 2.6279 -3.1907 38 1 7.5371 3.1794 -3.2523 39 1 8.3139 0.6020 -8.3733 40 1 7.9026 0.0789 -5.3698 41 1 9.5178 0.4909 -4.6501 42 1 5.8565 1.3963 -4.2030 43 1 6.0345 -0.2308 -3.5006 44 1 4.6490 1.0881 -1.9911 45 1 5.8398 2.4146 -1.9878 46 1 4.4286 -2.8738 1.0222 47 1 3.7727 -3.2487 -0.5895 48 1 5.3120 -2.3677 -0.4379 49 1 1.6521 -2.1330 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035847310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:06 Heat of formation + Delta-G solvation = 24.089460 kcal Electronic energy + Delta-G solvation = -28631.869728 eV Core-core repulsion = 24945.487127 eV Total energy + Delta-G solvation = -3686.382601 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.90107 -40.75334 -39.43034 -37.14292 -34.55284 -34.36756 -33.34109 -32.08791 -31.88034 -29.01973 -28.25740 -27.93049 -26.56673 -25.18576 -24.44331 -23.54859 -22.94225 -21.99526 -20.65378 -19.19944 -18.67794 -18.03941 -17.40260 -16.93347 -16.76116 -16.17209 -16.01270 -15.77967 -15.64564 -15.48296 -15.09858 -14.86146 -14.42369 -14.36704 -14.17832 -14.08527 -14.00960 -13.74472 -13.64531 -13.30090 -13.11537 -12.91325 -12.86275 -12.82898 -12.65017 -12.45986 -12.42397 -12.17551 -12.12695 -11.92384 -11.68654 -11.65018 -11.15498 -10.92083 -10.88613 -10.79281 -9.73747 -9.67701 -9.47796 -8.88423 -7.88288 -5.20982 0.03929 0.40919 1.45896 1.47656 1.56218 1.60637 1.99818 2.48532 2.73772 3.33091 3.42353 3.47124 3.60536 3.81566 3.84352 3.90748 3.98906 4.09301 4.14511 4.30853 4.34701 4.36814 4.43635 4.56674 4.62140 4.65827 4.70264 4.74017 4.74394 4.78709 4.83973 4.86234 4.89597 4.90233 5.00433 5.05105 5.13243 5.17969 5.22123 5.28117 5.28913 5.32858 5.35870 5.48125 5.55147 5.58072 5.63339 5.73565 5.95207 5.99947 6.35652 6.92709 7.07451 7.62812 8.64934 9.29271 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014699 B = 0.003179 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.475234 B = 8804.435751 C = 9823.252158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.065 4.065 3 C -0.133 4.133 4 C -0.084 4.084 5 C -0.156 4.156 6 C 0.563 3.437 7 O -0.574 6.574 8 N -0.598 5.598 9 C 0.119 3.881 10 C -0.105 4.105 11 C -0.087 4.087 12 C 0.131 3.869 13 N -0.637 5.637 14 C -0.224 4.224 15 H 0.086 0.914 16 C -0.068 4.068 17 N -0.954 5.954 18 Si 0.977 3.023 19 H -0.290 1.290 20 H -0.296 1.296 21 H -0.265 1.265 22 C 0.161 3.839 23 C -0.088 4.088 24 C 0.119 3.881 25 C -0.051 4.051 26 C -0.113 4.113 27 C -0.131 4.131 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.152 0.848 32 H 0.137 0.863 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.246 0.754 40 H 0.032 0.968 41 H 0.011 0.989 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.044 0.956 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.765 -1.748 17.912 23.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.065 4.065 3 C -0.151 4.151 4 C -0.102 4.102 5 C -0.159 4.159 6 C 0.353 3.647 7 O -0.455 6.455 8 N -0.329 5.329 9 C -0.003 4.003 10 C -0.144 4.144 11 C -0.088 4.088 12 C 0.006 3.994 13 N -0.362 5.362 14 C -0.352 4.352 15 H 0.103 0.897 16 C -0.261 4.261 17 N -0.603 5.603 18 Si 0.805 3.195 19 H -0.217 1.217 20 H -0.222 1.222 21 H -0.190 1.190 22 C 0.036 3.964 23 C -0.127 4.127 24 C -0.003 4.003 25 C -0.052 4.052 26 C -0.169 4.169 27 C -0.149 4.149 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.169 0.831 32 H 0.155 0.845 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.029 0.971 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.116 0.884 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.105 0.895 48 H 0.064 0.936 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.461 -1.957 17.994 23.167 hybrid contribution 0.755 0.213 -1.435 1.635 sum -13.706 -1.744 16.559 21.566 Atomic orbital electron populations 1.20905 0.88775 1.04067 1.03465 1.20465 0.97854 0.92643 0.95572 1.21278 0.93263 0.99050 1.01467 1.21387 0.95124 0.96518 0.97197 1.19759 0.91829 0.95383 1.08896 1.18683 0.87903 0.77484 0.80676 1.90727 1.70572 1.44468 1.39748 1.48115 1.07761 1.51909 1.25129 1.21636 0.78504 1.02389 0.97792 1.21655 1.00168 0.99615 0.92984 1.21843 0.95656 0.96779 0.94530 1.22533 0.98028 0.95080 0.83723 1.45896 1.83403 1.05651 1.01270 1.19326 1.40734 0.91323 0.83809 0.89663 1.25605 1.03129 0.97076 1.00309 1.70032 1.57412 1.09924 1.22937 0.85100 0.77536 0.77760 0.79097 1.21682 1.22247 1.18956 1.22008 0.95319 0.87395 0.91728 1.21312 0.93422 1.00753 0.97188 1.21875 0.96737 0.97690 0.83987 1.20069 0.94522 0.94154 0.96467 1.20804 0.99160 0.94050 1.02934 1.21104 0.92287 0.99268 1.02262 0.89788 0.90210 0.90510 0.83062 0.84488 0.89465 0.89592 0.92304 0.89783 0.93955 0.92905 0.94489 0.94931 0.97146 0.91811 0.92771 0.88442 0.89693 0.90533 0.89519 0.93645 0.83595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 10.01 71.24 0.71 -0.37 16 2 C -0.07 -1.01 5.89 -19.81 -0.12 -1.13 16 3 C -0.13 -2.14 9.68 22.23 0.22 -1.92 16 4 C -0.08 -1.67 7.75 22.53 0.17 -1.49 16 5 C -0.16 -3.87 4.61 -20.09 -0.09 -3.96 16 6 C 0.56 16.39 6.08 86.79 0.53 16.92 16 7 O -0.57 -20.09 15.35 -3.90 -0.06 -20.15 16 8 N -0.60 -16.05 2.94 -821.85 -2.42 -18.47 16 9 C 0.12 3.10 6.35 86.43 0.55 3.65 16 10 C -0.11 -3.09 5.30 30.57 0.16 -2.93 16 11 C -0.09 -3.07 0.84 -52.51 -0.04 -3.12 16 12 C 0.13 5.02 7.63 83.32 0.64 5.66 16 13 N -0.64 -32.14 3.55 -738.20 -2.62 -34.76 16 14 C -0.22 -12.42 10.74 84.03 0.90 -11.52 16 15 H 0.09 4.49 7.83 -2.91 -0.02 4.47 16 16 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 17 N -0.95 -58.07 11.51 21.65 0.25 -57.82 16 18 Si 0.98 45.61 29.55 68.60 2.03 47.64 16 19 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 20 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 22 C 0.16 7.68 6.54 83.31 0.55 8.23 16 23 C -0.09 -2.92 5.27 30.56 0.16 -2.76 16 24 C 0.12 3.04 5.53 86.42 0.48 3.52 16 25 C -0.05 -1.18 5.91 -19.61 -0.12 -1.30 16 26 C -0.11 -2.54 9.26 71.24 0.66 -1.88 16 27 C -0.13 -2.35 9.36 22.23 0.21 -2.14 16 28 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 30 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 31 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 32 H 0.14 2.37 7.77 -2.91 -0.02 2.35 16 33 H 0.09 2.36 6.97 -2.39 -0.02 2.35 16 34 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.08 2.33 8.10 -2.39 -0.02 2.31 16 37 H 0.04 1.56 8.06 -2.39 -0.02 1.54 16 38 H 0.05 1.86 7.53 -2.39 -0.02 1.84 16 39 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 40 H 0.03 1.77 7.11 -2.38 -0.02 1.75 16 41 H 0.01 0.53 8.09 -2.39 -0.02 0.51 16 42 H 0.06 2.45 7.95 -2.39 -0.02 2.43 16 43 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.10 2.28 5.27 -2.39 -0.01 2.27 16 45 H 0.08 1.96 7.60 -2.39 -0.02 1.95 16 46 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 47 H 0.09 1.53 8.12 -2.38 -0.02 1.51 16 48 H 0.04 1.23 6.57 -2.39 -0.02 1.22 16 49 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -71.61 384.73 4.14 -67.47 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.93 Total: 16.07 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 6.03 Total: 0.02 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -4.79 Total: -111.05 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.06 Total: -20.15 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -71.61 4.14 -67.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035847310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.563 kcal (2) G-P(sol) polarization free energy of solvation -71.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds