Wall clock time and date at job start Tue Mar 31 2020 15:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 119.99502 * 2 1 4 4 C 1.38220 * 119.99414 * 180.02562 * 3 2 1 5 5 C 1.38253 * 120.00310 * 359.97438 * 4 3 2 6 6 C 1.38214 * 119.99970 * 359.81211 * 5 4 3 7 7 C 1.38204 * 119.99941 * 180.02562 * 2 1 3 8 8 C 1.50702 * 120.00291 * 359.97438 * 7 2 1 9 9 C 1.52996 * 109.47185 * 85.00045 * 8 7 2 10 10 H 1.08997 * 109.47020 * 305.00538 * 9 8 7 11 11 C 1.53005 * 109.46935 * 65.00046 * 9 8 7 12 12 C 1.50694 * 109.47330 * 184.99987 * 9 8 7 13 13 O 1.21288 * 120.00012 * 359.97438 * 12 9 8 14 14 N 1.34779 * 120.00369 * 179.97438 * 12 9 8 15 15 C 1.46497 * 120.00259 * 180.02562 * 14 12 9 16 16 H 1.09003 * 115.51747 * 350.41529 * 15 14 12 17 17 C 1.53000 * 117.44323 * 205.00409 * 15 14 12 18 18 H 1.09004 * 119.53859 * 4.11114 * 17 15 14 19 19 C 1.54390 * 118.12333 * 159.21334 * 17 15 14 20 20 N 1.48146 * 104.61724 * 87.18757 * 19 17 15 21 21 C 1.36938 * 127.83478 * 140.41922 * 20 19 17 22 22 H 1.08001 * 119.99813 * 195.56965 * 21 20 19 23 23 C 1.38811 * 120.00299 * 15.56538 * 21 20 19 24 24 N 1.31616 * 119.99959 * 9.10172 * 23 21 20 25 25 Si 1.86806 * 119.99822 * 189.10072 * 23 21 20 26 26 H 1.48495 * 109.46746 * 90.00395 * 25 23 21 27 27 H 1.48502 * 109.46778 * 209.99884 * 25 23 21 28 28 H 1.48490 * 109.47004 * 329.99848 * 25 23 21 29 29 C 1.48145 * 104.32538 * 320.41405 * 20 19 17 30 30 C 1.52995 * 117.44307 * 135.75880 * 15 14 12 31 31 H 1.08998 * 119.54279 * 355.88489 * 30 15 14 32 32 H 1.08999 * 109.46951 * 269.97692 * 1 2 3 33 33 H 1.09002 * 109.47634 * 29.97719 * 1 2 3 34 34 H 1.08998 * 109.47198 * 149.98235 * 1 2 3 35 35 H 1.07996 * 120.00449 * 359.97438 * 3 2 1 36 36 H 1.08007 * 119.99743 * 179.97438 * 4 3 2 37 37 H 1.07995 * 120.00144 * 179.97438 * 5 4 3 38 38 H 1.08000 * 120.00248 * 180.23240 * 6 5 4 39 39 H 1.08996 * 109.47255 * 324.99901 * 8 7 2 40 40 H 1.09001 * 109.47132 * 204.99973 * 8 7 2 41 41 H 1.09002 * 109.47324 * 300.00187 * 11 9 8 42 42 H 1.09000 * 109.46872 * 179.97438 * 11 9 8 43 43 H 1.08997 * 109.46865 * 60.00397 * 11 9 8 44 44 H 0.97003 * 119.99760 * 0.02562 * 14 12 9 45 45 H 1.09003 * 110.40109 * 205.97226 * 19 17 15 46 46 H 1.08998 * 110.40607 * 328.39919 * 19 17 15 47 47 H 0.97000 * 119.99744 * 179.97438 * 24 23 21 48 48 H 1.08996 * 110.40643 * 158.37715 * 29 20 19 49 49 H 1.09004 * 110.40474 * 280.68280 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 3.5807 -1.1969 0.0039 7 6 2.1980 -1.1969 -0.0005 8 6 1.4445 -2.5020 -0.0005 9 6 1.0801 -2.8806 -1.4374 10 1 0.5304 -2.0613 -1.9007 11 6 2.3585 -3.1512 -2.2334 12 6 0.2223 -4.1195 -1.4284 13 8 -0.0686 -4.6480 -0.3763 14 7 -0.2217 -4.6402 -2.5895 15 6 -1.0561 -5.8443 -2.5807 16 1 -1.1392 -6.3510 -1.6192 17 6 -1.0504 -6.7154 -3.8385 18 1 -0.3874 -6.4609 -4.6654 19 6 -1.4973 -8.1873 -3.7064 20 7 -2.9682 -8.1483 -3.8791 21 6 -3.7581 -9.0377 -4.5574 22 1 -4.7704 -8.7689 -4.8210 23 6 -3.2579 -10.2846 -4.9063 24 7 -2.0955 -10.6828 -4.4347 25 14 -4.2346 -11.3975 -6.0453 26 1 -3.8500 -11.1247 -7.4534 27 1 -3.9445 -12.8169 -5.7190 28 1 -5.6855 -11.1355 -5.8688 29 6 -3.3905 -6.9290 -3.1513 30 6 -2.2850 -5.8573 -3.4921 31 1 -2.5416 -4.9637 -4.0609 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3634 0.8902 -0.5135 34 1 -0.3633 -0.8898 -0.5141 35 1 1.6582 2.1327 -0.0004 36 1 4.1204 2.1327 -0.0010 37 1 5.3516 0.0001 -0.0014 38 1 4.1206 -2.1322 0.0077 39 1 0.5341 -2.3960 0.5893 40 1 2.0697 -3.2825 0.4334 41 1 2.9791 -2.2551 -2.2399 42 1 2.0989 -3.4213 -3.2569 43 1 2.9083 -3.9705 -1.7701 44 1 0.0112 -4.2177 -3.4311 45 1 -1.0390 -8.7951 -4.4866 46 1 -1.2404 -8.5755 -2.7208 47 1 -1.7461 -11.5544 -4.6782 48 1 -4.3605 -6.5876 -3.5125 49 1 -3.4313 -7.1213 -2.0791 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115317543.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:01 Heat of formation + Delta-G solvation = 32.987897 kcal Electronic energy + Delta-G solvation = -27145.115989 eV Core-core repulsion = 23459.119253 eV Total energy + Delta-G solvation = -3685.996736 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.41778 -39.53985 -38.28544 -35.18234 -34.48263 -33.04540 -32.59477 -31.10438 -30.08111 -27.53775 -27.02154 -26.74058 -25.72917 -23.95419 -22.30765 -21.66561 -20.74309 -20.44027 -19.64132 -19.29310 -17.26306 -16.86528 -16.45863 -16.25561 -16.02977 -15.18199 -15.01509 -14.77952 -14.55781 -13.90740 -13.76180 -13.63790 -13.41568 -13.27644 -13.06533 -12.84235 -12.73729 -12.48711 -12.39020 -12.24477 -12.17961 -11.57075 -11.52799 -11.44006 -11.32206 -11.09830 -11.03599 -10.98597 -10.84182 -10.36099 -10.20712 -10.14680 -9.75763 -9.67938 -9.21169 -9.04861 -8.80903 -8.74504 -8.31351 -6.88173 -5.80663 -3.15120 1.07243 1.11818 2.64850 3.12205 3.37886 3.42940 3.45107 3.49568 4.32181 4.40924 4.46586 4.51761 4.61913 4.65970 4.70556 4.81137 4.87468 5.05935 5.14061 5.17693 5.19751 5.36312 5.36981 5.38401 5.40116 5.50507 5.51785 5.57724 5.59885 5.60304 5.73555 5.77625 5.85921 5.87370 5.94165 6.02872 6.15750 6.22942 6.24466 6.25730 6.43272 6.51566 6.68465 6.75477 6.81890 6.88374 7.34339 7.52165 7.59444 7.70622 8.19447 8.29753 9.09900 9.72590 10.49655 11.33695 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.036119 B = 0.001960 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.033874 B =14283.524603 C =14624.745395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 C -0.121 4.121 4 C -0.123 4.123 5 C -0.126 4.126 6 C -0.111 4.111 7 C -0.078 4.078 8 C -0.064 4.064 9 C -0.104 4.104 10 H 0.097 0.903 11 C -0.146 4.146 12 C 0.518 3.482 13 O -0.538 6.538 14 N -0.697 5.697 15 C 0.093 3.907 16 H 0.131 0.869 17 C -0.180 4.180 18 H 0.100 0.900 19 C 0.185 3.815 20 N -0.593 5.593 21 C -0.227 4.227 22 H 0.077 0.923 23 C -0.006 4.006 24 N -0.915 5.915 25 Si 0.914 3.086 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.158 3.842 30 C -0.186 4.186 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.398 0.602 45 H 0.091 0.909 46 H 0.026 0.974 47 H 0.255 0.745 48 H 0.050 0.950 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.912 24.316 6.493 27.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.081 4.081 3 C -0.139 4.139 4 C -0.141 4.141 5 C -0.144 4.144 6 C -0.129 4.129 7 C -0.078 4.078 8 C -0.101 4.101 9 C -0.125 4.125 10 H 0.115 0.885 11 C -0.204 4.204 12 C 0.304 3.696 13 O -0.414 6.414 14 N -0.345 5.345 15 C -0.012 4.012 16 H 0.149 0.851 17 C -0.202 4.202 18 H 0.118 0.882 19 C 0.059 3.941 20 N -0.316 5.316 21 C -0.355 4.355 22 H 0.095 0.905 23 C -0.203 4.203 24 N -0.561 5.561 25 Si 0.744 3.256 26 H -0.215 1.215 27 H -0.216 1.216 28 H -0.205 1.205 29 C 0.031 3.969 30 C -0.207 4.207 31 H 0.124 0.876 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.232 0.768 45 H 0.109 0.891 46 H 0.044 0.956 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 11.665 23.643 7.156 27.318 hybrid contribution -0.185 -0.213 -1.180 1.213 sum 11.480 23.430 5.976 26.767 Atomic orbital electron populations 1.20899 0.91236 1.02991 1.02679 1.19814 0.96069 0.92602 0.99618 1.21023 0.94278 0.97403 1.01150 1.21111 0.94311 0.98010 1.00629 1.21119 0.99793 0.92552 1.00940 1.21095 0.93578 0.98186 0.99999 1.19755 0.93647 0.94425 0.99935 1.20423 1.00901 0.93735 0.95083 1.21282 0.97052 0.96045 0.98124 0.88485 1.21845 0.96184 1.02777 0.99560 1.20557 0.79891 0.85408 0.83712 1.90710 1.57944 1.61884 1.30900 1.45428 1.51904 1.28577 1.08632 1.21891 0.94237 0.87660 0.97437 0.85148 1.24632 1.00486 0.97676 0.97360 0.88168 1.21066 0.84605 0.87971 1.00418 1.45126 1.02273 1.24854 1.59373 1.18997 0.95858 0.92717 1.27927 0.90498 1.24911 0.97869 0.96626 1.00910 1.69897 1.19532 1.20261 1.46412 0.86094 0.79196 0.79859 0.80457 1.21522 1.21637 1.20520 1.21690 0.93924 0.86322 0.95003 1.25087 0.91689 1.00123 1.03842 0.87624 0.90952 0.91556 0.91045 0.86241 0.86329 0.86244 0.85987 0.89738 0.90162 0.91156 0.92071 0.91827 0.76831 0.89102 0.95611 0.93518 0.93180 0.95174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 9.22 36.01 0.33 -0.57 16 2 C -0.08 -0.69 5.88 -104.63 -0.62 -1.31 16 3 C -0.12 -0.94 9.70 -39.58 -0.38 -1.33 16 4 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 5 C -0.13 -0.95 10.05 -39.58 -0.40 -1.35 16 6 C -0.11 -0.92 8.37 -39.58 -0.33 -1.25 16 7 C -0.08 -0.69 4.56 -104.62 -0.48 -1.17 16 8 C -0.06 -0.63 3.48 -27.88 -0.10 -0.72 16 9 C -0.10 -0.99 2.46 -91.77 -0.23 -1.22 16 10 H 0.10 0.80 7.03 -51.93 -0.36 0.44 16 11 C -0.15 -1.20 8.74 37.16 0.32 -0.87 16 12 C 0.52 6.96 7.15 -10.99 -0.08 6.89 16 13 O -0.54 -9.43 15.49 5.55 0.09 -9.34 16 14 N -0.70 -9.16 5.46 -53.81 -0.29 -9.46 16 15 C 0.09 1.57 5.92 -67.93 -0.40 1.17 16 16 H 0.13 2.52 7.40 -51.93 -0.38 2.14 16 17 C -0.18 -3.38 6.98 -89.21 -0.62 -4.01 16 18 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 19 C 0.19 4.47 5.70 -2.41 -0.01 4.45 16 20 N -0.59 -15.24 3.38 -166.73 -0.56 -15.80 16 21 C -0.23 -6.32 10.35 -15.06 -0.16 -6.47 16 22 H 0.08 2.07 7.84 -52.49 -0.41 1.65 16 23 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 24 N -0.91 -26.80 10.86 55.49 0.60 -26.20 16 25 Si 0.91 21.90 29.56 -169.99 -5.03 16.87 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 C 0.16 3.35 7.10 -0.57 0.00 3.34 16 30 C -0.19 -3.29 7.34 -87.38 -0.64 -3.94 16 31 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 34 H 0.07 0.56 5.49 -51.93 -0.29 0.28 16 35 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.12 0.65 8.06 -52.48 -0.42 0.22 16 37 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.08 0.91 6.80 -51.93 -0.35 0.56 16 40 H 0.08 0.84 8.05 -51.93 -0.42 0.42 16 41 H 0.07 0.52 6.53 -51.93 -0.34 0.19 16 42 H 0.06 0.45 7.56 -51.93 -0.39 0.06 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.40 4.12 8.25 -40.82 -0.34 3.79 16 45 H 0.09 2.43 6.51 -51.93 -0.34 2.09 16 46 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 391.60 15.07 5.90 5.90 Total: -1.00 -32.20 391.60 -11.40 -43.60 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -7.83 Total: 4.34 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -4.28 Total: -9.92 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.25 Total: -51.45 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.20 -11.40 -43.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115317543.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.587 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds