Wall clock time and date at job start Tue Mar 31 2020 15:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47604 * 2 1 4 4 C 1.38340 * 119.85558 * 269.73314 * 3 2 1 5 5 C 1.37978 * 120.14085 * 179.72322 * 4 3 2 6 6 C 1.39535 * 119.85067 * 0.56601 * 5 4 3 7 7 C 1.47821 * 120.13786 * 179.73081 * 6 5 4 8 8 C 1.31106 * 117.80287 * 244.71566 * 7 6 5 9 9 C 1.50341 * 123.43327 * 180.54868 * 8 7 6 10 10 N 1.46996 * 109.19218 * 349.43412 * 9 8 7 11 11 C 1.34773 * 121.33819 * 223.06039 * 10 9 8 12 12 O 1.21582 * 120.00017 * 174.77695 * 11 10 9 13 13 N 1.34773 * 119.99945 * 354.77043 * 11 10 9 14 14 C 1.46500 * 120.00164 * 184.97254 * 13 11 10 15 15 C 1.52992 * 109.47364 * 180.02562 * 14 13 11 16 16 C 1.50702 * 109.47322 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99662 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00236 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99842 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 119.99816 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47442 * 89.99612 * 20 18 16 22 22 H 1.48501 * 109.47207 * 209.99830 * 20 18 16 23 23 H 1.48499 * 109.47193 * 329.99677 * 20 18 16 24 24 C 1.47315 * 117.32390 * 43.03916 * 10 9 8 25 25 C 1.49985 * 117.80911 * 64.97826 * 7 6 5 26 26 C 1.39533 * 119.72152 * 359.70646 * 6 5 4 27 27 C 1.37969 * 119.85199 * 359.97438 * 26 6 5 28 28 H 1.08996 * 109.47442 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47336 * 59.99692 * 1 2 3 30 30 H 1.08998 * 109.46796 * 299.99950 * 1 2 3 31 31 H 1.08998 * 109.47336 * 120.00308 * 2 1 3 32 32 H 1.09006 * 109.47106 * 240.00049 * 2 1 3 33 33 H 1.08000 * 119.92975 * 359.97366 * 4 3 2 34 34 H 1.07997 * 120.07618 * 180.24968 * 5 4 3 35 35 H 1.08001 * 118.29157 * 0.81799 * 8 7 6 36 36 H 1.09003 * 109.67528 * 229.42159 * 9 8 7 37 37 H 1.09000 * 109.38649 * 109.28090 * 9 8 7 38 38 H 0.97003 * 120.00235 * 4.98185 * 13 11 10 39 39 H 1.09001 * 109.47265 * 300.00587 * 14 13 11 40 40 H 1.08998 * 109.47001 * 59.99970 * 14 13 11 41 41 H 1.09003 * 109.46932 * 299.99601 * 15 14 13 42 42 H 1.08998 * 109.47375 * 60.00110 * 15 14 13 43 43 H 0.96998 * 119.99891 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.76109 * 178.12125 * 24 10 9 45 45 H 1.09003 * 109.76181 * 57.34780 * 24 10 9 46 46 H 1.09006 * 109.31150 * 281.29683 * 25 7 6 47 47 H 1.08997 * 109.31464 * 40.90909 * 25 7 6 48 48 H 1.07997 * 120.07221 * 180.02562 * 26 6 5 49 49 H 1.08005 * 119.92972 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2673 2.0682 -1.1998 5 6 2.7219 3.3709 -1.2067 6 6 2.9560 4.0312 0.0000 7 6 3.4487 5.4249 0.0000 8 6 4.6414 5.6518 0.4949 9 6 5.2611 7.0196 0.5687 10 7 4.4461 7.9621 -0.2113 11 6 5.0148 8.8746 -1.0238 12 8 4.3182 9.5784 -1.7293 13 7 6.3557 9.0071 -1.0542 14 6 6.9687 10.0706 -1.8539 15 6 8.4907 9.9996 -1.7159 16 6 9.1213 11.0939 -2.5380 17 1 8.4987 11.7719 -3.1028 18 6 10.4931 11.2296 -2.5691 19 7 11.0433 12.1843 -3.2869 20 14 11.5699 10.0565 -1.5927 21 1 11.9155 8.8838 -2.4357 22 1 12.8146 10.7538 -1.1805 23 1 10.8358 9.5991 -0.3856 24 6 2.9828 7.8687 -0.0694 25 6 2.5484 6.4854 -0.5605 26 6 2.7225 3.3707 1.2067 27 6 2.2616 2.0702 1.1998 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 2.0906 1.5542 -2.1331 34 1 2.9011 3.8767 -2.1439 35 1 5.2104 4.8118 0.8651 36 1 6.2713 6.9873 0.1606 37 1 5.2985 7.3442 1.6086 38 1 6.9149 8.3983 -0.5468 39 1 6.6928 9.9430 -2.9007 40 1 6.6163 11.0397 -1.5009 41 1 8.7669 10.1271 -0.6691 42 1 8.8429 9.0305 -2.0692 43 1 12.0084 12.2795 -3.3091 44 1 2.5042 8.6408 -0.6718 45 1 2.7053 7.9921 0.9774 46 1 2.5941 6.4586 -1.6493 47 1 1.5245 6.2965 -0.2380 48 1 2.9013 3.8765 2.1440 49 1 2.0800 1.5579 2.1330 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273471421.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:52 Heat of formation + Delta-G solvation = -19.995652 kcal Electronic energy + Delta-G solvation = -26617.319702 eV Core-core repulsion = 22929.025426 eV Total energy + Delta-G solvation = -3688.294275 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.49819 -40.43613 -38.61428 -36.67345 -35.67825 -34.82907 -33.60367 -32.42921 -31.85069 -31.50072 -29.88723 -27.19906 -26.20314 -24.70190 -24.15747 -23.39019 -22.66063 -21.96486 -21.33588 -19.73729 -18.97177 -18.61196 -17.33689 -16.97613 -16.81894 -16.40528 -16.26138 -16.17384 -15.64279 -15.43269 -15.21964 -15.02780 -14.79373 -14.58992 -14.57403 -14.31258 -14.26030 -14.16377 -13.71300 -13.42695 -13.31214 -13.04866 -12.91411 -12.70161 -12.53095 -12.18307 -12.16544 -12.14433 -11.99672 -11.75249 -11.67324 -11.57795 -11.50252 -11.25627 -10.78100 -10.24379 -10.03914 -9.84492 -9.54526 -9.25119 -8.29082 -6.36431 0.27141 0.51136 1.16586 1.39680 1.42416 1.53654 1.60141 2.09959 2.37743 2.81376 2.97149 3.05874 3.55242 3.87288 3.91928 3.96594 4.05465 4.12718 4.15949 4.26460 4.33457 4.36369 4.44581 4.49804 4.52209 4.56242 4.61700 4.66898 4.70652 4.72611 4.75567 4.81029 4.99764 5.06078 5.08532 5.10857 5.16856 5.21580 5.31128 5.39294 5.41039 5.43533 5.48124 5.59463 5.61008 5.66805 5.73769 5.83856 5.98364 6.10962 6.23807 6.70442 6.96541 7.27876 7.53331 8.87698 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.019623 B = 0.002024 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.572978 B =13833.996465 C =14556.020745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.089 4.089 4 C -0.126 4.126 5 C -0.119 4.119 6 C -0.067 4.067 7 C -0.079 4.079 8 C -0.154 4.154 9 C 0.138 3.862 10 N -0.630 5.630 11 C 0.703 3.297 12 O -0.638 6.638 13 N -0.732 5.732 14 C 0.164 3.836 15 C -0.011 4.011 16 C -0.540 4.540 17 H 0.028 0.972 18 C 0.004 3.996 19 N -0.950 5.950 20 Si 0.959 3.041 21 H -0.266 1.266 22 H -0.286 1.286 23 H -0.235 1.235 24 C 0.129 3.871 25 C -0.088 4.088 26 C -0.108 4.108 27 C -0.122 4.122 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.131 0.869 34 H 0.117 0.883 35 H 0.135 0.865 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.407 0.593 39 H 0.039 0.961 40 H 0.043 0.957 41 H 0.039 0.961 42 H 0.034 0.966 43 H 0.268 0.732 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.098 0.902 48 H 0.136 0.864 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.112 -28.498 14.884 37.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.144 4.144 5 C -0.137 4.137 6 C -0.067 4.067 7 C -0.079 4.079 8 C -0.172 4.172 9 C 0.016 3.984 10 N -0.368 5.368 11 C 0.405 3.595 12 O -0.520 6.520 13 N -0.389 5.389 14 C 0.039 3.961 15 C -0.048 4.048 16 C -0.578 4.578 17 H 0.047 0.953 18 C -0.193 4.193 19 N -0.590 5.590 20 Si 0.781 3.219 21 H -0.191 1.191 22 H -0.212 1.212 23 H -0.158 1.158 24 C 0.007 3.993 25 C -0.125 4.125 26 C -0.126 4.126 27 C -0.140 4.140 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.148 0.852 34 H 0.135 0.865 35 H 0.153 0.847 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.245 0.755 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.112 0.888 46 H 0.081 0.919 47 H 0.116 0.884 48 H 0.154 0.846 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.448 -27.891 14.331 37.435 hybrid contribution 0.934 0.076 -0.266 0.974 sum -19.514 -27.815 14.065 36.774 Atomic orbital electron populations 1.21732 0.94311 1.02349 1.01851 1.20600 0.96462 0.91600 1.03584 1.20227 0.98476 0.97180 0.93005 1.21154 1.00092 0.94671 0.98462 1.21339 0.99609 0.95232 0.97530 1.19087 1.00610 0.93311 0.93654 1.19538 0.95667 0.92386 1.00342 1.22736 0.95900 0.97605 1.00997 1.20714 0.94404 0.86063 0.97184 1.47385 1.07931 1.35283 1.46197 1.15995 0.82402 0.80813 0.80331 1.90861 1.63031 1.50761 1.47344 1.45278 1.04713 1.36007 1.52921 1.20892 0.93341 0.88396 0.93441 1.19635 0.91039 0.96643 0.97522 1.21243 0.92461 1.14943 1.29149 0.95330 1.26079 0.99648 0.97312 0.96237 1.70076 1.11758 1.34667 1.42505 0.85539 0.77627 0.78507 0.80213 1.19082 1.21213 1.15800 1.21613 0.78152 0.97167 1.02416 1.20654 0.99471 0.92117 1.00298 1.21432 0.98987 0.94877 0.97316 1.21222 0.99737 0.94774 0.98283 0.91255 0.93180 0.92738 0.90063 0.90614 0.85151 0.86537 0.84740 0.88651 0.87823 0.75476 0.94275 0.93898 0.94313 0.94761 0.92337 0.90477 0.88831 0.91852 0.88390 0.84628 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.90 71.98 0.71 -0.49 16 2 C -0.09 -0.77 6.06 29.85 0.18 -0.59 16 3 C -0.09 -1.18 5.14 -19.82 -0.10 -1.28 16 4 C -0.13 -1.91 9.68 22.23 0.22 -1.69 16 5 C -0.12 -2.08 9.73 22.52 0.22 -1.86 16 6 C -0.07 -1.12 5.08 -20.12 -0.10 -1.22 16 7 C -0.08 -1.36 5.28 -17.69 -0.09 -1.46 16 8 C -0.15 -2.42 9.45 25.43 0.24 -2.18 16 9 C 0.14 2.35 6.47 85.43 0.55 2.90 16 10 N -0.63 -15.73 2.96 -841.33 -2.49 -18.22 16 11 C 0.70 24.45 8.32 179.06 1.49 25.94 16 12 O -0.64 -28.11 15.85 -3.98 -0.06 -28.17 16 13 N -0.73 -24.58 5.46 -478.56 -2.61 -27.19 16 14 C 0.16 6.95 5.62 86.38 0.49 7.44 16 15 C -0.01 -0.48 4.15 29.85 0.12 -0.35 16 16 C -0.54 -31.13 9.66 25.60 0.25 -30.88 16 17 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 18 C 0.00 0.25 5.47 84.66 0.46 0.71 16 19 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 20 Si 0.96 42.31 27.47 68.60 1.88 44.19 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 23 H -0.24 -9.14 6.54 99.48 0.65 -8.49 16 24 C 0.13 2.75 6.48 86.25 0.56 3.31 16 25 C -0.09 -1.62 5.90 29.65 0.17 -1.44 16 26 C -0.11 -1.52 9.66 22.52 0.22 -1.30 16 27 C -0.12 -1.56 9.68 22.23 0.22 -1.34 16 28 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 32 H 0.08 0.62 8.08 -2.38 -0.02 0.60 16 33 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.12 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.13 1.74 7.94 -2.91 -0.02 1.71 16 36 H 0.10 1.52 6.04 -2.39 -0.01 1.50 16 37 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.41 10.77 6.16 -92.71 -0.57 10.19 16 39 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.04 1.63 7.20 -2.39 -0.02 1.61 16 42 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 43 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 44 H 0.08 2.00 7.08 -2.39 -0.02 1.98 16 45 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 47 H 0.10 1.47 8.13 -2.39 -0.02 1.46 16 48 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 49 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -75.23 398.12 3.12 -72.12 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.30 Total: 22.29 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 5.80 Total: -5.79 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -4.81 Total: -104.63 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.06 Total: -28.17 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.88 Total: 44.19 kcal Total: -75.23 3.12 -72.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273471421.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.119 kcal (2) G-P(sol) polarization free energy of solvation -75.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds