Wall clock time and date at job start Tue Mar 31 2020 16:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47538 * 2 1 4 4 C 1.53007 * 109.46742 * 239.99534 * 2 1 3 5 5 C 1.52994 * 109.47080 * 120.00384 * 2 1 3 6 6 N 1.46497 * 109.47707 * 58.47148 * 5 2 1 7 7 C 1.46497 * 120.00577 * 270.22184 * 6 5 2 8 8 C 1.53000 * 109.47058 * 269.99742 * 7 6 5 9 9 C 1.47199 * 109.47220 * 179.97438 * 8 7 6 10 10 N 6.49899 * 59.18276 * 125.50445 * 2 1 3 11 11 C 1.34777 * 120.00045 * 90.21293 * 6 5 2 12 12 O 1.21290 * 119.99958 * 4.92303 * 11 6 5 13 13 C 1.50697 * 120.00547 * 184.91637 * 11 6 5 14 14 C 1.50696 * 109.47589 * 177.58445 * 13 11 6 15 15 C 1.37640 * 120.13302 * 264.57640 * 14 13 11 16 16 C 1.38610 * 120.24961 * 179.97438 * 15 14 13 17 17 C 1.38652 * 120.50135 * 0.02562 * 16 15 14 18 18 C 1.37599 * 120.25125 * 0.02924 * 17 16 15 19 19 C 1.40701 * 120.12395 * 84.29590 * 14 13 11 20 20 C 1.41391 * 120.24445 * 359.97438 * 19 14 13 21 21 H 1.07998 * 120.00504 * 332.20901 * 20 19 14 22 22 C 1.39953 * 119.99770 * 152.20367 * 20 19 14 23 23 N 1.30821 * 120.00110 * 342.98662 * 22 20 19 24 24 Si 1.86800 * 119.99787 * 162.98357 * 22 20 19 25 25 H 1.48499 * 109.47214 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47234 * 120.00123 * 24 22 20 27 27 H 1.48506 * 109.47218 * 240.00081 * 24 22 20 28 28 H 1.09001 * 109.47080 * 300.00563 * 1 2 3 29 29 H 1.09006 * 109.46853 * 59.99536 * 1 2 3 30 30 H 1.08991 * 109.47364 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47299 * 180.02562 * 3 2 1 32 32 H 1.09010 * 109.46771 * 299.99813 * 3 2 1 33 33 H 1.08991 * 109.47409 * 59.99767 * 3 2 1 34 34 H 1.08995 * 109.47417 * 305.88389 * 4 2 1 35 35 H 1.09008 * 109.46526 * 65.87907 * 4 2 1 36 36 H 1.09003 * 109.47110 * 185.87473 * 4 2 1 37 37 H 1.09003 * 109.47118 * 298.47379 * 5 2 1 38 38 H 1.08995 * 109.47433 * 178.47642 * 5 2 1 39 39 H 1.09010 * 109.47085 * 29.99401 * 7 6 5 40 40 H 1.08993 * 109.47858 * 149.99406 * 7 6 5 41 41 H 1.09003 * 109.47274 * 299.99706 * 8 7 6 42 42 H 1.09006 * 109.47217 * 59.99368 * 8 7 6 43 43 H 1.09003 * 109.47139 * 297.59021 * 13 11 6 44 44 H 1.09004 * 109.46880 * 57.58502 * 13 11 6 45 45 H 1.08000 * 119.87067 * 359.97438 * 15 14 13 46 46 H 1.08001 * 119.74745 * 179.97438 * 16 15 14 47 47 H 1.08003 * 119.87367 * 180.02562 * 17 16 15 48 48 H 1.07998 * 120.12384 * 179.97438 * 18 17 16 49 49 H 0.97001 * 120.00152 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 2.0400 -0.7213 1.2491 6 7 1.5219 -2.0915 1.2677 7 6 0.2409 -2.3816 1.9167 8 6 0.4810 -2.7251 3.3882 9 6 -0.8062 -3.0160 4.0404 10 7 -1.7994 -3.2415 4.5436 11 6 2.2236 -3.0852 0.6876 12 8 3.3242 -2.8628 0.2290 13 6 1.6410 -4.4728 0.6089 14 6 2.5924 -5.3758 -0.1329 15 6 2.4270 -5.5952 -1.4816 16 6 3.3010 -6.4250 -2.1664 17 6 4.3498 -7.0433 -1.5031 18 6 4.5337 -6.8393 -0.1548 19 6 3.6567 -5.9933 0.5494 20 6 3.8403 -5.7702 1.9335 21 1 3.5041 -4.8466 2.3809 22 6 4.4577 -6.7465 2.7237 23 7 4.5643 -7.9736 2.2830 24 14 5.1297 -6.2972 4.4077 25 1 4.8849 -4.8562 4.6701 26 1 4.4485 -7.1115 5.4459 27 1 6.5896 -6.5667 4.4462 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6768 1.9563 0.8899 34 1 1.5932 -1.7141 -1.3034 35 1 1.7650 -0.1503 -2.1362 36 1 3.1249 -0.8134 -1.1983 37 1 1.6992 -0.1920 2.1390 38 1 3.1296 -0.7451 1.2356 39 1 -0.4070 -1.5076 1.8486 40 1 -0.2353 -3.2265 1.4194 41 1 1.1289 -3.5990 3.4563 42 1 0.9572 -1.8801 3.8856 43 1 1.4843 -4.8588 1.6162 44 1 0.6879 -4.4371 0.0812 45 1 1.6132 -5.1190 -2.0082 46 1 3.1634 -6.5918 -3.2246 47 1 5.0250 -7.6875 -2.0467 48 1 5.3511 -7.3223 0.3600 49 1 4.9925 -8.6501 2.8305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776906758.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:13 Heat of formation + Delta-G solvation = -7.313898 kcal Electronic energy + Delta-G solvation = -29030.167194 eV Core-core repulsion = 25342.422842 eV Total energy + Delta-G solvation = -3687.744353 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.12177 -37.79894 -36.92222 -36.68785 -34.91861 -33.60178 -31.67375 -31.02032 -29.46789 -27.66046 -27.45783 -27.14556 -25.75563 -24.88291 -23.85262 -20.94421 -20.30977 -19.06373 -18.37576 -17.76938 -17.14315 -16.68807 -15.88519 -15.53656 -15.26045 -14.92531 -14.49560 -14.36163 -14.13353 -13.81107 -13.76718 -13.42896 -13.25542 -12.97828 -12.68127 -12.62332 -12.57647 -12.38811 -12.06756 -11.95984 -11.76102 -11.57278 -11.55314 -11.45010 -11.31210 -11.18006 -11.08956 -10.95533 -10.83877 -10.71742 -10.67723 -10.59203 -10.39339 -9.46643 -9.36973 -9.16366 -9.12736 -8.44510 -7.30885 -7.27382 -6.73604 -4.33619 2.59746 2.72208 2.78336 2.94778 3.07978 3.11349 3.25977 3.26637 3.28092 3.93592 4.03821 4.66301 4.70791 4.73091 4.78132 4.88346 4.99022 5.17779 5.22374 5.43251 5.50130 5.53205 5.54276 5.69599 5.71657 5.72728 5.80297 5.89845 5.92929 5.99192 6.01727 6.04122 6.11743 6.21032 6.27831 6.34179 6.41711 6.50760 6.56634 6.76235 6.81253 7.09632 7.28330 7.41909 7.47337 7.61754 7.72559 7.92936 8.06810 8.13140 8.31914 8.64560 8.79441 8.92373 9.02167 10.21823 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.009324 B = 0.004905 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3002.279299 B = 5706.892583 C = 7161.693917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.138 4.138 4 C -0.133 4.133 5 C 0.124 3.876 6 N -0.623 5.623 7 C 0.114 3.886 8 C -0.054 4.054 9 C 0.214 3.786 10 N -0.440 5.440 11 C 0.519 3.481 12 O -0.506 6.506 13 C -0.072 4.072 14 C -0.180 4.180 15 C -0.081 4.081 16 C -0.238 4.238 17 C -0.107 4.107 18 C -0.157 4.157 19 C 0.132 3.868 20 C -0.457 4.457 21 H 0.075 0.925 22 C 0.078 3.922 23 N -0.795 5.795 24 Si 0.898 3.102 25 H -0.260 1.260 26 H -0.276 1.276 27 H -0.272 1.272 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.043 0.957 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.113 0.887 49 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.308 13.575 -0.074 14.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.086 4.086 3 C -0.196 4.196 4 C -0.191 4.191 5 C 0.001 3.999 6 N -0.358 5.358 7 C -0.011 4.011 8 C -0.096 4.096 9 C -0.104 4.104 10 N -0.117 5.117 11 C 0.309 3.691 12 O -0.378 6.378 13 C -0.111 4.111 14 C -0.182 4.182 15 C -0.100 4.100 16 C -0.257 4.257 17 C -0.126 4.126 18 C -0.177 4.177 19 C 0.130 3.870 20 C -0.487 4.487 21 H 0.093 0.907 22 C -0.139 4.139 23 N -0.421 5.421 24 Si 0.723 3.277 25 H -0.184 1.184 26 H -0.201 1.201 27 H -0.198 1.198 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.137 0.863 42 H 0.129 0.871 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.103 0.897 47 H 0.103 0.897 48 H 0.131 0.869 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.075 13.103 0.489 14.899 hybrid contribution 0.708 0.123 0.647 0.967 sum -6.367 13.227 1.136 14.723 Atomic orbital electron populations 1.21981 0.94919 1.01909 1.01190 1.20963 0.95656 0.95354 0.96665 1.21801 1.01283 0.95046 1.01463 1.21824 1.02090 0.99717 0.95428 1.21487 1.00468 0.81483 0.96444 1.48005 1.21808 1.08030 1.57940 1.21502 0.86560 1.03059 0.90013 1.19894 0.88019 1.05733 0.95933 1.29016 0.94625 0.93067 0.93676 1.81230 1.12008 1.09201 1.09273 1.21197 0.85156 0.86375 0.76401 1.90691 1.19181 1.82886 1.45025 1.20338 0.97809 0.90477 1.02520 1.19062 0.99263 1.06280 0.93587 1.20289 0.97908 0.98126 0.93656 1.20297 1.01055 1.06748 0.97636 1.20668 0.97414 0.99334 0.95153 1.21229 1.00876 1.03149 0.92415 1.17309 0.88156 0.88827 0.92714 1.19447 1.34267 1.02085 0.92895 0.90717 1.25856 0.93718 0.94242 1.00105 1.69826 1.32741 1.01567 1.37932 0.86424 0.79516 0.79989 0.81795 1.18408 1.20120 1.19762 0.92982 0.93015 0.92096 0.92441 0.92685 0.92842 0.92713 0.93746 0.91738 0.91133 0.89561 0.89418 0.89162 0.86251 0.87109 0.88675 0.90790 0.89876 0.89742 0.89661 0.86940 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 7.17 37.16 0.27 -0.96 16 2 C -0.09 -0.86 0.85 -154.51 -0.13 -0.99 16 3 C -0.14 -1.19 8.47 37.16 0.31 -0.87 16 4 C -0.13 -1.70 7.14 37.16 0.27 -1.44 16 5 C 0.12 1.34 4.61 -4.05 -0.02 1.32 16 6 N -0.62 -7.45 2.00 -173.69 -0.35 -7.80 16 7 C 0.11 1.03 4.09 -4.04 -0.02 1.01 16 8 C -0.05 -0.47 6.03 -29.52 -0.18 -0.65 16 9 C 0.21 2.34 15.43 -20.76 -0.32 2.02 16 10 N -0.44 -6.09 18.54 42.15 0.78 -5.31 16 11 C 0.52 8.72 5.63 -10.99 -0.06 8.66 16 12 O -0.51 -10.65 14.09 5.55 0.08 -10.57 16 13 C -0.07 -1.27 3.68 -29.04 -0.11 -1.38 16 14 C -0.18 -4.09 4.43 -103.91 -0.46 -4.55 16 15 C -0.08 -1.80 9.66 -39.66 -0.38 -2.18 16 16 C -0.24 -5.39 10.05 -39.29 -0.39 -5.78 16 17 C -0.11 -2.56 10.02 -39.66 -0.40 -2.95 16 18 C -0.16 -4.09 8.68 -38.87 -0.34 -4.43 16 19 C 0.13 3.38 5.54 -106.82 -0.59 2.78 16 20 C -0.46 -11.38 8.09 -37.74 -0.31 -11.68 16 21 H 0.07 1.77 6.72 -52.49 -0.35 1.42 16 22 C 0.08 1.89 5.13 -17.34 -0.09 1.80 16 23 N -0.80 -20.06 11.12 55.55 0.62 -19.44 16 24 Si 0.90 18.19 29.59 -169.99 -5.03 13.15 16 25 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 26 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 27 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 28 H 0.05 0.38 8.01 -51.93 -0.42 -0.04 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.55 6.01 -51.93 -0.31 0.24 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.80 6.70 -51.93 -0.35 0.45 16 35 H 0.04 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.06 0.97 7.60 -51.93 -0.39 0.57 16 37 H 0.07 0.57 8.07 -51.93 -0.42 0.16 16 38 H 0.09 1.13 7.35 -51.93 -0.38 0.75 16 39 H 0.09 0.62 6.02 -51.92 -0.31 0.31 16 40 H 0.09 0.81 6.38 -51.93 -0.33 0.48 16 41 H 0.12 1.18 7.61 -51.93 -0.40 0.79 16 42 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.10 1.65 6.56 -51.93 -0.34 1.31 16 44 H 0.07 1.11 7.36 -51.93 -0.38 0.73 16 45 H 0.08 1.61 8.06 -52.49 -0.42 1.19 16 46 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 47 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 48 H 0.11 3.02 6.36 -52.49 -0.33 2.69 16 49 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 LS Contribution 393.44 15.07 5.93 5.93 Total: -1.00 -30.36 393.44 -8.58 -38.93 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -7.66 Total: 5.36 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -2.95 Total: -20.26 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 1.05 Total: -32.55 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.36 -8.58 -38.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776906758.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.621 kcal (2) G-P(sol) polarization free energy of solvation -30.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds