Wall clock time and date at job start Tue Mar 31 2020 16:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47538 * 2 1 4 4 C 1.53007 * 109.46742 * 239.99534 * 2 1 3 5 5 C 1.52994 * 109.47080 * 120.00384 * 2 1 3 6 6 N 1.46497 * 109.47707 * 58.47148 * 5 2 1 7 7 C 1.46497 * 120.00577 * 270.22184 * 6 5 2 8 8 C 1.53000 * 109.47058 * 269.99742 * 7 6 5 9 9 C 1.47199 * 109.47220 * 179.97438 * 8 7 6 10 10 N 6.49899 * 59.18276 * 125.50445 * 2 1 3 11 11 C 1.34777 * 120.00045 * 90.21293 * 6 5 2 12 12 O 1.21290 * 119.99958 * 4.92303 * 11 6 5 13 13 C 1.50697 * 120.00547 * 184.91637 * 11 6 5 14 14 C 1.50696 * 109.47589 * 177.58445 * 13 11 6 15 15 C 1.37640 * 120.13302 * 264.57640 * 14 13 11 16 16 C 1.38610 * 120.24961 * 179.97438 * 15 14 13 17 17 C 1.38652 * 120.50135 * 0.02562 * 16 15 14 18 18 C 1.37599 * 120.25125 * 0.02924 * 17 16 15 19 19 C 1.40701 * 120.12395 * 84.29590 * 14 13 11 20 20 C 1.41391 * 120.24445 * 359.97438 * 19 14 13 21 21 H 1.07998 * 120.00504 * 332.20901 * 20 19 14 22 22 C 1.39953 * 119.99770 * 152.20367 * 20 19 14 23 23 N 1.30821 * 120.00110 * 342.98662 * 22 20 19 24 24 Si 1.86800 * 119.99787 * 162.98357 * 22 20 19 25 25 H 1.48499 * 109.47214 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47234 * 120.00123 * 24 22 20 27 27 H 1.48506 * 109.47218 * 240.00081 * 24 22 20 28 28 H 1.09001 * 109.47080 * 300.00563 * 1 2 3 29 29 H 1.09006 * 109.46853 * 59.99536 * 1 2 3 30 30 H 1.08991 * 109.47364 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47299 * 180.02562 * 3 2 1 32 32 H 1.09010 * 109.46771 * 299.99813 * 3 2 1 33 33 H 1.08991 * 109.47409 * 59.99767 * 3 2 1 34 34 H 1.08995 * 109.47417 * 305.88389 * 4 2 1 35 35 H 1.09008 * 109.46526 * 65.87907 * 4 2 1 36 36 H 1.09003 * 109.47110 * 185.87473 * 4 2 1 37 37 H 1.09003 * 109.47118 * 298.47379 * 5 2 1 38 38 H 1.08995 * 109.47433 * 178.47642 * 5 2 1 39 39 H 1.09010 * 109.47085 * 29.99401 * 7 6 5 40 40 H 1.08993 * 109.47858 * 149.99406 * 7 6 5 41 41 H 1.09003 * 109.47274 * 299.99706 * 8 7 6 42 42 H 1.09006 * 109.47217 * 59.99368 * 8 7 6 43 43 H 1.09003 * 109.47139 * 297.59021 * 13 11 6 44 44 H 1.09004 * 109.46880 * 57.58502 * 13 11 6 45 45 H 1.08000 * 119.87067 * 359.97438 * 15 14 13 46 46 H 1.08001 * 119.74745 * 179.97438 * 16 15 14 47 47 H 1.08003 * 119.87367 * 180.02562 * 17 16 15 48 48 H 1.07998 * 120.12384 * 179.97438 * 18 17 16 49 49 H 0.97001 * 120.00152 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 2.0400 -0.7213 1.2491 6 7 1.5219 -2.0915 1.2677 7 6 0.2409 -2.3816 1.9167 8 6 0.4810 -2.7251 3.3882 9 6 -0.8062 -3.0160 4.0404 10 7 -1.7994 -3.2415 4.5436 11 6 2.2236 -3.0852 0.6876 12 8 3.3242 -2.8628 0.2290 13 6 1.6410 -4.4728 0.6089 14 6 2.5924 -5.3758 -0.1329 15 6 2.4270 -5.5952 -1.4816 16 6 3.3010 -6.4250 -2.1664 17 6 4.3498 -7.0433 -1.5031 18 6 4.5337 -6.8393 -0.1548 19 6 3.6567 -5.9933 0.5494 20 6 3.8403 -5.7702 1.9335 21 1 3.5041 -4.8466 2.3809 22 6 4.4577 -6.7465 2.7237 23 7 4.5643 -7.9736 2.2830 24 14 5.1297 -6.2972 4.4077 25 1 4.8849 -4.8562 4.6701 26 1 4.4485 -7.1115 5.4459 27 1 6.5896 -6.5667 4.4462 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6768 1.9563 0.8899 34 1 1.5932 -1.7141 -1.3034 35 1 1.7650 -0.1503 -2.1362 36 1 3.1249 -0.8134 -1.1983 37 1 1.6992 -0.1920 2.1390 38 1 3.1296 -0.7451 1.2356 39 1 -0.4070 -1.5076 1.8486 40 1 -0.2353 -3.2265 1.4194 41 1 1.1289 -3.5990 3.4563 42 1 0.9572 -1.8801 3.8856 43 1 1.4843 -4.8588 1.6162 44 1 0.6879 -4.4371 0.0812 45 1 1.6132 -5.1190 -2.0082 46 1 3.1634 -6.5918 -3.2246 47 1 5.0250 -7.6875 -2.0467 48 1 5.3511 -7.3223 0.3600 49 1 4.9925 -8.6501 2.8305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776906758.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:12 Heat of formation + Delta-G solvation = -21.479190 kcal Electronic energy + Delta-G solvation = -29030.781448 eV Core-core repulsion = 25342.422842 eV Total energy + Delta-G solvation = -3688.358606 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.27108 -39.37095 -38.01627 -37.74875 -35.91107 -35.42683 -33.28415 -31.91889 -31.30315 -29.06640 -28.16009 -28.05274 -27.18105 -26.33244 -24.83409 -22.78183 -21.83896 -20.22722 -19.37378 -18.96625 -18.64942 -17.83294 -17.25810 -16.78628 -16.51133 -16.13761 -15.77427 -15.55810 -15.35480 -15.14207 -14.81380 -14.60437 -14.46543 -14.31575 -14.09295 -13.59085 -13.57616 -13.50591 -13.29980 -13.15765 -12.91290 -12.84756 -12.78733 -12.68205 -12.59935 -12.43333 -12.38343 -12.27139 -12.06722 -11.97769 -11.75116 -11.52630 -11.43502 -11.24664 -11.13885 -10.97779 -10.49209 -9.47909 -9.16725 -9.09072 -8.54406 -6.22102 1.04468 1.17945 1.40954 1.53168 1.56383 1.71357 1.86951 2.00627 2.22782 2.24125 2.84244 3.17442 3.76960 3.94176 3.95053 4.03640 4.11593 4.19041 4.21070 4.39716 4.43874 4.55677 4.63084 4.69561 4.73457 4.76018 4.81440 4.84603 4.85588 4.90873 4.99427 5.02509 5.06142 5.16124 5.18867 5.19575 5.26601 5.30038 5.40111 5.42544 5.53629 5.59789 5.61270 5.82746 5.85294 6.09241 6.22122 6.26334 6.47751 6.56226 6.65024 6.79874 7.06062 7.17845 7.54981 8.43291 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.009324 B = 0.004905 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3002.279299 B = 5706.892583 C = 7161.693917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 C -0.135 4.135 4 C -0.128 4.128 5 C 0.121 3.879 6 N -0.607 5.607 7 C 0.109 3.891 8 C -0.048 4.048 9 C 0.244 3.756 10 N -0.491 5.491 11 C 0.525 3.475 12 O -0.558 6.558 13 C -0.072 4.072 14 C -0.182 4.182 15 C -0.092 4.092 16 C -0.243 4.243 17 C -0.120 4.120 18 C -0.193 4.193 19 C 0.101 3.899 20 C -0.476 4.476 21 H 0.080 0.920 22 C 0.037 3.963 23 N -0.830 5.830 24 Si 0.965 3.035 25 H -0.251 1.251 26 H -0.266 1.266 27 H -0.276 1.276 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.033 0.967 35 H 0.052 0.948 36 H 0.032 0.968 37 H 0.110 0.890 38 H 0.057 0.943 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.140 0.860 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.100 0.900 48 H 0.090 0.910 49 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.318 16.073 0.858 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.082 4.082 3 C -0.192 4.192 4 C -0.185 4.185 5 C -0.001 4.001 6 N -0.340 5.340 7 C -0.015 4.015 8 C -0.089 4.089 9 C -0.074 4.074 10 N -0.169 5.169 11 C 0.314 3.686 12 O -0.434 6.434 13 C -0.112 4.112 14 C -0.183 4.183 15 C -0.111 4.111 16 C -0.262 4.262 17 C -0.138 4.138 18 C -0.212 4.212 19 C 0.099 3.901 20 C -0.506 4.506 21 H 0.098 0.902 22 C -0.177 4.177 23 N -0.457 5.457 24 Si 0.786 3.214 25 H -0.174 1.174 26 H -0.191 1.191 27 H -0.201 1.201 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.128 0.872 38 H 0.076 0.924 39 H 0.137 0.863 40 H 0.111 0.889 41 H 0.128 0.872 42 H 0.158 0.842 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.119 0.881 48 H 0.108 0.892 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.132 15.624 1.432 18.154 hybrid contribution 1.302 -0.630 0.228 1.464 sum -7.831 14.995 1.660 16.997 Atomic orbital electron populations 1.21961 0.93099 1.02095 1.02563 1.20934 0.96977 0.95702 0.94590 1.21771 1.00601 0.94088 1.02788 1.21760 0.99887 0.99198 0.97696 1.21661 0.99057 0.80810 0.98579 1.47834 1.22149 1.07642 1.56386 1.21754 0.85215 1.04730 0.89803 1.19947 0.86761 1.06467 0.95724 1.29220 0.94220 0.91501 0.92424 1.81273 1.13670 1.10965 1.11032 1.20878 0.84600 0.86746 0.76370 1.90686 1.21422 1.83652 1.47670 1.20356 0.97897 0.90465 1.02448 1.19571 0.98883 1.05639 0.94242 1.20706 0.98639 0.97910 0.93802 1.20673 1.00436 1.06135 0.99004 1.20910 0.98351 0.99855 0.94691 1.21232 1.01414 1.05028 0.93538 1.17699 0.89199 0.89635 0.93587 1.19631 1.35436 1.02470 0.93046 0.90228 1.26641 0.93500 0.93863 1.03689 1.69901 1.33668 1.02581 1.39560 0.85414 0.78392 0.80159 0.77404 1.17402 1.19137 1.20105 0.90602 0.92758 0.92459 0.93610 0.92201 0.90667 0.94747 0.92862 0.94895 0.87192 0.92396 0.86319 0.88946 0.87242 0.84222 0.88338 0.87799 0.86899 0.87142 0.88147 0.89168 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 7.17 71.98 0.52 -1.32 16 2 C -0.08 -1.42 0.85 -52.18 -0.04 -1.46 16 3 C -0.13 -1.94 8.47 71.98 0.61 -1.33 16 4 C -0.13 -3.20 7.14 71.98 0.51 -2.69 16 5 C 0.12 2.29 4.61 86.38 0.40 2.69 16 6 N -0.61 -13.05 2.00 -821.83 -1.65 -14.70 16 7 C 0.11 1.55 4.09 86.38 0.35 1.91 16 8 C -0.05 -0.66 6.03 28.79 0.17 -0.49 16 9 C 0.24 4.64 15.43 89.44 1.38 6.02 16 10 N -0.49 -12.68 18.54 20.01 0.37 -12.31 16 11 C 0.52 17.19 5.63 87.66 0.49 17.69 16 12 O -0.56 -23.95 14.09 -3.06 -0.04 -24.00 16 13 C -0.07 -2.48 3.68 29.10 0.11 -2.38 16 14 C -0.18 -8.28 4.43 -19.40 -0.09 -8.37 16 15 C -0.09 -4.04 9.66 22.22 0.21 -3.82 16 16 C -0.24 -10.96 10.05 22.46 0.23 -10.73 16 17 C -0.12 -5.87 10.02 22.22 0.22 -5.64 16 18 C -0.19 -10.48 8.68 22.73 0.20 -10.29 16 19 C 0.10 5.32 5.54 -21.29 -0.12 5.20 16 20 C -0.48 -24.27 8.09 23.46 0.19 -24.08 16 21 H 0.08 3.83 6.72 -2.91 -0.02 3.81 16 22 C 0.04 1.84 5.13 85.26 0.44 2.27 16 23 N -0.83 -43.45 11.12 21.83 0.24 -43.21 16 24 Si 0.96 37.60 29.59 68.60 2.03 39.63 16 25 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 26 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 27 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 28 H 0.08 0.67 8.01 -2.39 -0.02 0.65 16 29 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.06 0.80 6.01 -2.39 -0.01 0.79 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.03 0.98 6.70 -2.39 -0.02 0.96 16 35 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.03 1.01 7.60 -2.39 -0.02 0.99 16 37 H 0.11 1.25 8.07 -2.39 -0.02 1.23 16 38 H 0.06 1.48 7.35 -2.39 -0.02 1.46 16 39 H 0.12 1.05 6.02 -2.38 -0.01 1.04 16 40 H 0.09 1.34 6.38 -2.39 -0.02 1.32 16 41 H 0.11 1.89 7.61 -2.39 -0.02 1.87 16 42 H 0.14 1.21 8.14 -2.38 -0.02 1.20 16 43 H 0.10 3.32 6.56 -2.39 -0.02 3.30 16 44 H 0.10 2.88 7.36 -2.39 -0.02 2.86 16 45 H 0.11 4.16 8.06 -2.91 -0.02 4.14 16 46 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 47 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 48 H 0.09 5.18 6.36 -2.91 -0.02 5.16 16 49 H 0.28 13.55 8.30 -92.71 -0.77 12.79 16 Total: -1.00 -70.56 393.44 7.68 -62.87 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.94 Total: 28.54 kcal Atomic # 6 Polarization: -42.62 SS G_CDS: 5.79 Total: -36.84 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -1.03 Total: -70.21 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.04 Total: -24.00 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Total: -70.56 7.68 -62.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776906758.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.395 kcal (2) G-P(sol) polarization free energy of solvation -70.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds