Wall clock time and date at job start Tue Mar 31 2020 15:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32680 * 1 3 3 C 1.47669 * 119.99844 * 2 1 4 4 C 1.39714 * 119.99577 * 179.97438 * 3 2 1 5 5 C 1.37601 * 120.00473 * 179.97438 * 4 3 2 6 6 C 1.39742 * 119.99396 * 0.02562 * 5 4 3 7 7 C 1.47689 * 120.00229 * 180.02562 * 6 5 4 8 8 O 1.21572 * 119.99835 * 318.71024 * 7 6 5 9 9 N 1.34773 * 119.99927 * 138.70377 * 7 6 5 10 10 C 1.46925 * 120.63304 * 354.16632 * 9 7 6 11 11 C 1.53193 * 108.77550 * 233.62640 * 10 9 7 12 12 C 1.53037 * 109.31258 * 305.36241 * 11 10 9 13 13 H 1.09005 * 109.45987 * 181.36847 * 12 11 10 14 14 N 1.46496 * 109.46264 * 301.34628 * 12 11 10 15 15 C 1.36934 * 119.99743 * 275.00010 * 14 12 11 16 16 H 1.07997 * 120.00073 * 359.97438 * 15 14 12 17 17 C 1.38818 * 119.99910 * 179.97438 * 15 14 12 18 18 N 1.31610 * 119.99783 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99847 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46938 * 60.00759 * 19 17 15 21 21 H 1.48500 * 109.47600 * 300.00332 * 19 17 15 22 22 H 1.48498 * 109.46894 * 180.02562 * 19 17 15 23 23 C 1.53045 * 109.53608 * 61.36513 * 12 11 10 24 24 H 1.08998 * 109.49817 * 58.59012 * 23 12 11 25 25 C 1.53002 * 109.49695 * 178.68309 * 23 12 11 26 26 C 1.53002 * 109.47273 * 185.00345 * 25 23 12 27 27 C 1.46926 * 120.63028 * 174.18339 * 9 7 6 28 28 C 1.39745 * 119.99231 * 0.27726 * 6 5 4 29 29 C 1.37598 * 119.99750 * 359.42214 * 28 6 5 30 30 H 1.07999 * 120.00314 * 359.97438 * 1 2 3 31 31 H 1.08005 * 120.00195 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.00314 * 180.02562 * 2 1 3 33 33 H 1.08003 * 119.99768 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.99993 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.58984 * 113.83961 * 10 9 7 36 36 H 1.08994 * 109.58707 * 353.41409 * 10 9 7 37 37 H 1.08996 * 109.50015 * 185.41261 * 11 10 9 38 38 H 1.09004 * 109.49581 * 65.31495 * 11 10 9 39 39 H 0.96999 * 120.00340 * 94.99954 * 14 12 11 40 40 H 0.97003 * 120.00626 * 359.97438 * 18 17 15 41 41 H 1.09000 * 109.46919 * 305.00038 * 25 23 12 42 42 H 1.08991 * 109.47563 * 64.99790 * 25 23 12 43 43 H 1.09002 * 109.47134 * 59.99711 * 26 25 23 44 44 H 1.08991 * 109.47392 * 179.97438 * 26 25 23 45 45 H 1.09000 * 109.46898 * 299.99706 * 26 25 23 46 46 H 1.09001 * 109.59043 * 246.16206 * 27 9 7 47 47 H 1.09006 * 109.58861 * 6.44316 * 27 9 7 48 48 H 1.07999 * 119.99803 * 179.70507 * 28 6 5 49 49 H 1.07995 * 120.00275 * 180.30112 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 3.4622 1.2788 0.0005 5 6 4.1504 2.4704 0.0000 6 6 3.4517 3.6806 -0.0005 7 6 4.1901 4.9596 -0.0017 8 8 5.1794 5.0910 0.6926 9 7 3.7673 5.9811 -0.7725 10 6 2.6520 5.7988 -1.7113 11 6 3.1044 6.2413 -3.1064 12 6 3.6378 7.6739 -3.0348 13 1 3.9379 7.9999 -4.0307 14 7 2.5882 8.5606 -2.5265 15 6 1.6619 9.0880 -3.3861 16 1 1.7053 8.8506 -4.4388 17 6 0.6671 9.9279 -2.9045 18 7 0.6145 10.2175 -1.6217 19 14 -0.5961 10.6479 -4.0772 20 1 -1.3440 9.5469 -4.7360 21 1 0.0941 11.4638 -5.1083 22 1 -1.5424 11.5056 -3.3196 23 6 4.8459 7.7239 -2.0966 24 1 5.6176 7.0458 -2.4608 25 6 5.3985 9.1500 -2.0512 26 6 6.6785 9.1745 -1.2134 27 6 4.4132 7.2982 -0.6902 28 6 2.0543 3.6804 0.0053 29 6 1.3664 2.4887 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 1.8668 -0.9353 -0.0004 33 1 4.0022 0.3434 0.0014 34 1 5.2304 2.4702 0.0000 35 1 1.8036 6.4046 -1.3931 36 1 2.3640 4.7479 -1.7369 37 1 2.2586 6.2019 -3.7927 38 1 3.8925 5.5770 -3.4610 39 1 2.5494 8.7742 -1.5811 40 1 1.2706 9.8440 -1.0127 41 1 5.6208 9.4859 -3.0640 42 1 4.6581 9.8125 -1.6030 43 1 7.4190 8.5121 -1.6616 44 1 7.0724 10.1903 -1.1813 45 1 6.4562 8.8386 -0.2005 46 1 3.7085 8.0264 -0.2886 47 1 5.2859 7.2373 -0.0399 48 1 1.5142 4.6157 0.0097 49 1 0.2865 2.4886 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037920467.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:34 Heat of formation + Delta-G solvation = 19.799334 kcal Electronic energy + Delta-G solvation = -28606.415851 eV Core-core repulsion = 24919.847216 eV Total energy + Delta-G solvation = -3686.568635 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.58047 -39.03527 -37.72657 -34.78722 -34.26823 -33.92077 -31.83808 -31.29088 -29.99498 -29.29949 -28.23170 -25.51584 -24.00561 -23.66495 -23.39907 -22.71051 -20.93884 -20.40824 -19.72759 -18.67819 -17.39334 -17.24299 -16.68422 -15.93844 -15.51942 -15.08497 -14.88004 -14.68362 -14.40730 -14.05058 -13.69893 -13.67830 -13.58566 -13.36559 -13.22643 -13.15873 -13.01907 -12.67509 -12.36622 -12.22287 -11.79446 -11.59888 -11.54592 -11.23465 -11.04053 -10.99839 -10.75481 -10.59981 -10.49778 -10.34750 -10.24309 -10.00624 -9.88004 -9.68147 -9.17898 -9.13371 -8.92971 -8.47003 -8.26779 -7.06227 -6.12354 -3.12743 0.47272 1.23173 2.09539 2.91049 3.18418 3.49281 3.51918 3.69632 3.75253 4.41761 4.55712 4.60136 4.64247 4.74848 4.96801 5.03788 5.17325 5.18009 5.20718 5.28222 5.43013 5.45601 5.46669 5.58856 5.62509 5.64942 5.69716 5.73369 5.81687 5.83513 5.94944 5.99376 6.05663 6.07398 6.10839 6.21429 6.25997 6.28391 6.31007 6.34450 6.48027 6.50729 6.55634 6.60617 6.68781 6.71940 6.82665 6.92363 7.61047 7.78658 8.28035 8.72121 9.18751 10.05240 10.20962 11.35197 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.003781 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.252097 B = 7403.126496 C = 9382.007251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.122 4.122 3 C -0.043 4.043 4 C -0.117 4.117 5 C -0.067 4.067 6 C -0.122 4.122 7 C 0.556 3.444 8 O -0.548 6.548 9 N -0.595 5.595 10 C 0.107 3.893 11 C -0.149 4.149 12 C 0.184 3.816 13 H 0.052 0.948 14 N -0.729 5.729 15 C -0.328 4.328 16 H 0.063 0.937 17 C -0.043 4.043 18 N -0.943 5.943 19 Si 1.077 2.923 20 H -0.296 1.296 21 H -0.296 1.296 22 H -0.286 1.286 23 C -0.104 4.104 24 H 0.068 0.932 25 C -0.109 4.109 26 C -0.153 4.153 27 C 0.119 3.881 28 C -0.082 4.082 29 C -0.121 4.121 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.366 0.634 40 H 0.253 0.747 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.048 0.952 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.135 0.865 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.784 -17.277 1.693 18.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.140 4.140 3 C -0.044 4.044 4 C -0.135 4.135 5 C -0.086 4.086 6 C -0.125 4.125 7 C 0.344 3.656 8 O -0.427 6.427 9 N -0.326 5.326 10 C -0.015 4.015 11 C -0.190 4.190 12 C 0.074 3.926 13 H 0.070 0.930 14 N -0.373 5.373 15 C -0.459 4.459 16 H 0.081 0.919 17 C -0.241 4.241 18 N -0.588 5.588 19 Si 0.908 3.092 20 H -0.224 1.224 21 H -0.224 1.224 22 H -0.212 1.212 23 C -0.124 4.124 24 H 0.086 0.914 25 C -0.147 4.147 26 C -0.211 4.211 27 C -0.003 4.003 28 C -0.101 4.101 29 C -0.139 4.139 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.201 0.799 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.107 0.893 48 H 0.153 0.847 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.946 -16.208 1.709 16.769 hybrid contribution 1.212 -0.972 0.193 1.565 sum 5.157 -17.181 1.901 18.039 Atomic orbital electron populations 1.24472 0.95702 1.02504 0.98361 1.21819 0.95257 0.95686 1.01230 1.19272 0.93352 0.93213 0.98521 1.21168 0.93183 0.97979 1.01199 1.21087 1.00302 0.90786 0.96442 1.20000 0.93941 0.93732 1.04827 1.18332 0.83847 0.83474 0.79932 1.90748 1.26228 1.82724 1.42988 1.48046 1.34583 1.10791 1.39162 1.22022 0.88838 1.01284 0.89404 1.22514 1.01122 0.99579 0.95825 1.20153 0.87710 0.89025 0.95704 0.93043 1.42469 1.31927 1.55554 1.07361 1.20015 1.08044 1.26389 0.91483 0.91865 1.25674 1.00301 0.98526 0.99565 1.70898 1.38262 1.47228 1.02459 0.83276 0.75891 0.76010 0.74012 1.22374 1.22380 1.21151 1.21771 0.98089 0.97058 0.95514 0.91367 1.21402 0.96743 0.96086 1.00447 1.21853 0.97886 1.01048 1.00277 1.21693 0.98136 0.82638 0.97800 1.21407 0.92912 0.98984 0.96752 1.21240 1.00192 0.91373 1.01080 0.87789 0.87657 0.86295 0.85327 0.85127 0.90053 0.90204 0.90662 0.93223 0.79900 0.93534 0.91920 0.90912 0.93249 0.93071 0.92788 0.91158 0.89337 0.84715 0.85102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 14.15 28.84 0.41 -0.85 16 2 C -0.12 -1.01 9.90 -37.62 -0.37 -1.38 16 3 C -0.04 -0.45 5.87 -104.94 -0.62 -1.07 16 4 C -0.12 -1.22 9.76 -39.26 -0.38 -1.60 16 5 C -0.07 -0.84 9.63 -39.25 -0.38 -1.21 16 6 C -0.12 -1.73 5.08 -104.91 -0.53 -2.26 16 7 C 0.56 9.33 7.30 -12.40 -0.09 9.24 16 8 O -0.55 -10.64 16.36 5.30 0.09 -10.55 16 9 N -0.59 -9.78 2.97 -173.94 -0.52 -10.29 16 10 C 0.11 1.71 4.66 -3.71 -0.02 1.69 16 11 C -0.15 -2.51 5.78 -26.61 -0.15 -2.67 16 12 C 0.18 3.45 2.53 -67.89 -0.17 3.28 16 13 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 14 N -0.73 -16.55 3.72 -53.38 -0.20 -16.74 16 15 C -0.33 -8.58 9.93 -15.06 -0.15 -8.73 16 16 H 0.06 1.65 7.83 -52.49 -0.41 1.24 16 17 C -0.04 -1.18 5.50 -17.43 -0.10 -1.28 16 18 N -0.94 -27.88 13.70 55.49 0.76 -27.12 16 19 Si 1.08 25.05 29.92 -169.99 -5.09 19.96 16 20 H -0.30 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.30 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 C -0.10 -1.71 2.14 -90.50 -0.19 -1.90 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 C -0.11 -1.74 5.19 -26.73 -0.14 -1.88 16 26 C -0.15 -2.09 9.68 37.16 0.36 -1.73 16 27 C 0.12 2.02 5.04 -3.71 -0.02 2.00 16 28 C -0.08 -1.05 7.37 -39.25 -0.29 -1.34 16 29 C -0.12 -1.33 9.38 -39.26 -0.37 -1.70 16 30 H 0.10 0.74 6.02 -52.49 -0.32 0.42 16 31 H 0.11 0.58 8.06 -52.48 -0.42 0.16 16 32 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 34 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.08 1.49 7.72 -51.93 -0.40 1.09 16 36 H 0.08 1.14 4.81 -51.93 -0.25 0.89 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.37 8.69 4.78 -40.82 -0.19 8.50 16 40 H 0.25 7.39 6.77 -40.82 -0.28 7.11 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.07 1.34 7.70 -51.93 -0.40 0.94 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.74 6.70 -51.93 -0.35 0.39 16 46 H 0.07 1.28 6.64 -51.93 -0.34 0.94 16 47 H 0.09 1.51 5.72 -51.93 -0.30 1.21 16 48 H 0.14 1.73 6.71 -52.49 -0.35 1.38 16 49 H 0.13 1.19 6.14 -52.49 -0.32 0.87 16 LS Contribution 383.58 15.07 5.78 5.78 Total: -1.00 -30.82 383.58 -9.73 -40.55 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -7.36 Total: 11.82 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -3.20 Total: -13.40 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.04 Total: -54.15 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.09 Total: 19.96 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.82 -9.73 -40.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037920467.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.349 kcal (2) G-P(sol) polarization free energy of solvation -30.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds