Wall clock time and date at job start Tue Mar 31 2020 15:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32680 * 1 3 3 C 1.47669 * 119.99844 * 2 1 4 4 C 1.39714 * 119.99577 * 179.97438 * 3 2 1 5 5 C 1.37601 * 120.00473 * 179.97438 * 4 3 2 6 6 C 1.39742 * 119.99396 * 0.02562 * 5 4 3 7 7 C 1.47689 * 120.00229 * 180.02562 * 6 5 4 8 8 O 1.21572 * 119.99835 * 318.71024 * 7 6 5 9 9 N 1.34773 * 119.99927 * 138.70377 * 7 6 5 10 10 C 1.46925 * 120.63304 * 354.16632 * 9 7 6 11 11 C 1.53193 * 108.77550 * 233.62640 * 10 9 7 12 12 C 1.53037 * 109.31258 * 305.36241 * 11 10 9 13 13 H 1.09005 * 109.45987 * 181.36847 * 12 11 10 14 14 N 1.46496 * 109.46264 * 301.34628 * 12 11 10 15 15 C 1.36934 * 119.99743 * 275.00010 * 14 12 11 16 16 H 1.07997 * 120.00073 * 359.97438 * 15 14 12 17 17 C 1.38818 * 119.99910 * 179.97438 * 15 14 12 18 18 N 1.31610 * 119.99783 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99847 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46938 * 60.00759 * 19 17 15 21 21 H 1.48500 * 109.47600 * 300.00332 * 19 17 15 22 22 H 1.48498 * 109.46894 * 180.02562 * 19 17 15 23 23 C 1.53045 * 109.53608 * 61.36513 * 12 11 10 24 24 H 1.08998 * 109.49817 * 58.59012 * 23 12 11 25 25 C 1.53002 * 109.49695 * 178.68309 * 23 12 11 26 26 C 1.53002 * 109.47273 * 185.00345 * 25 23 12 27 27 C 1.46926 * 120.63028 * 174.18339 * 9 7 6 28 28 C 1.39745 * 119.99231 * 0.27726 * 6 5 4 29 29 C 1.37598 * 119.99750 * 359.42214 * 28 6 5 30 30 H 1.07999 * 120.00314 * 359.97438 * 1 2 3 31 31 H 1.08005 * 120.00195 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.00314 * 180.02562 * 2 1 3 33 33 H 1.08003 * 119.99768 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.99993 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.58984 * 113.83961 * 10 9 7 36 36 H 1.08994 * 109.58707 * 353.41409 * 10 9 7 37 37 H 1.08996 * 109.50015 * 185.41261 * 11 10 9 38 38 H 1.09004 * 109.49581 * 65.31495 * 11 10 9 39 39 H 0.96999 * 120.00340 * 94.99954 * 14 12 11 40 40 H 0.97003 * 120.00626 * 359.97438 * 18 17 15 41 41 H 1.09000 * 109.46919 * 305.00038 * 25 23 12 42 42 H 1.08991 * 109.47563 * 64.99790 * 25 23 12 43 43 H 1.09002 * 109.47134 * 59.99711 * 26 25 23 44 44 H 1.08991 * 109.47392 * 179.97438 * 26 25 23 45 45 H 1.09000 * 109.46898 * 299.99706 * 26 25 23 46 46 H 1.09001 * 109.59043 * 246.16206 * 27 9 7 47 47 H 1.09006 * 109.58861 * 6.44316 * 27 9 7 48 48 H 1.07999 * 119.99803 * 179.70507 * 28 6 5 49 49 H 1.07995 * 120.00275 * 180.30112 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 3.4622 1.2788 0.0005 5 6 4.1504 2.4704 0.0000 6 6 3.4517 3.6806 -0.0005 7 6 4.1901 4.9596 -0.0017 8 8 5.1794 5.0910 0.6926 9 7 3.7673 5.9811 -0.7725 10 6 2.6520 5.7988 -1.7113 11 6 3.1044 6.2413 -3.1064 12 6 3.6378 7.6739 -3.0348 13 1 3.9379 7.9999 -4.0307 14 7 2.5882 8.5606 -2.5265 15 6 1.6619 9.0880 -3.3861 16 1 1.7053 8.8506 -4.4388 17 6 0.6671 9.9279 -2.9045 18 7 0.6145 10.2175 -1.6217 19 14 -0.5961 10.6479 -4.0772 20 1 -1.3440 9.5469 -4.7360 21 1 0.0941 11.4638 -5.1083 22 1 -1.5424 11.5056 -3.3196 23 6 4.8459 7.7239 -2.0966 24 1 5.6176 7.0458 -2.4608 25 6 5.3985 9.1500 -2.0512 26 6 6.6785 9.1745 -1.2134 27 6 4.4132 7.2982 -0.6902 28 6 2.0543 3.6804 0.0053 29 6 1.3664 2.4887 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 1.8668 -0.9353 -0.0004 33 1 4.0022 0.3434 0.0014 34 1 5.2304 2.4702 0.0000 35 1 1.8036 6.4046 -1.3931 36 1 2.3640 4.7479 -1.7369 37 1 2.2586 6.2019 -3.7927 38 1 3.8925 5.5770 -3.4610 39 1 2.5494 8.7742 -1.5811 40 1 1.2706 9.8440 -1.0127 41 1 5.6208 9.4859 -3.0640 42 1 4.6581 9.8125 -1.6030 43 1 7.4190 8.5121 -1.6616 44 1 7.0724 10.1903 -1.1813 45 1 6.4562 8.8386 -0.2005 46 1 3.7085 8.0264 -0.2886 47 1 5.2859 7.2373 -0.0399 48 1 1.5142 4.6157 0.0097 49 1 0.2865 2.4886 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037920467.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:33 Heat of formation + Delta-G solvation = 4.348592 kcal Electronic energy + Delta-G solvation = -28607.085846 eV Core-core repulsion = 24919.847216 eV Total energy + Delta-G solvation = -3687.238629 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83190 -40.13062 -39.07321 -36.20848 -35.67625 -34.98900 -33.51332 -32.21662 -30.99729 -30.82341 -29.63610 -26.82330 -25.49056 -25.28645 -24.59647 -23.65907 -22.30436 -21.47012 -20.63099 -20.14255 -19.27338 -18.50858 -17.72891 -17.09918 -16.93988 -16.44426 -16.13267 -15.77253 -15.72888 -15.49938 -15.21584 -14.93527 -14.79030 -14.53033 -14.45575 -14.30106 -14.10400 -13.90474 -13.60616 -13.29384 -13.20663 -12.99166 -12.68883 -12.59001 -12.30650 -12.26300 -12.22324 -11.91306 -11.82475 -11.69478 -11.66348 -11.46162 -11.35448 -11.07763 -11.01597 -10.79719 -10.01884 -9.76443 -9.21025 -9.02327 -8.29917 -5.23404 -0.40784 0.34417 1.26539 1.60928 1.69602 1.75248 1.85541 1.94299 2.74965 2.84980 3.33396 3.46961 3.66486 3.71270 3.76526 3.79536 3.89128 3.91072 3.94551 4.15362 4.20935 4.29259 4.31977 4.33458 4.35743 4.42602 4.47782 4.56185 4.70792 4.71863 4.78466 4.87722 4.92140 4.94174 4.99632 5.05495 5.09389 5.13537 5.15838 5.21724 5.29726 5.31715 5.32646 5.41345 5.54812 5.63779 5.69258 5.79482 5.90023 6.28570 6.56578 6.95664 7.16157 8.07225 8.19942 9.21111 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.003781 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.252097 B = 7403.126496 C = 9382.007251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.140 4.140 3 C -0.037 4.037 4 C -0.114 4.114 5 C -0.072 4.072 6 C -0.148 4.148 7 C 0.555 3.445 8 O -0.580 6.580 9 N -0.595 5.595 10 C 0.118 3.882 11 C -0.142 4.142 12 C 0.179 3.821 13 H 0.045 0.955 14 N -0.735 5.735 15 C -0.317 4.317 16 H 0.065 0.935 17 C -0.102 4.102 18 N -0.977 5.977 19 Si 1.122 2.878 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.299 1.299 23 C -0.093 4.093 24 H 0.084 0.916 25 C -0.104 4.104 26 C -0.146 4.146 27 C 0.125 3.875 28 C -0.090 4.090 29 C -0.127 4.127 30 H 0.103 0.897 31 H 0.126 0.874 32 H 0.140 0.860 33 H 0.159 0.841 34 H 0.132 0.868 35 H 0.054 0.946 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.359 0.641 40 H 0.241 0.759 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.049 0.951 47 H 0.088 0.912 48 H 0.125 0.875 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.800 -20.144 0.649 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.157 4.157 3 C -0.037 4.037 4 C -0.131 4.131 5 C -0.091 4.091 6 C -0.151 4.151 7 C 0.346 3.654 8 O -0.461 6.461 9 N -0.325 5.325 10 C -0.004 4.004 11 C -0.183 4.183 12 C 0.071 3.929 13 H 0.063 0.937 14 N -0.378 5.378 15 C -0.449 4.449 16 H 0.083 0.917 17 C -0.293 4.293 18 N -0.626 5.626 19 Si 0.948 3.052 20 H -0.205 1.205 21 H -0.209 1.209 22 H -0.225 1.225 23 C -0.112 4.112 24 H 0.102 0.898 25 C -0.142 4.142 26 C -0.203 4.203 27 C 0.002 3.998 28 C -0.108 4.108 29 C -0.144 4.144 30 H 0.121 0.879 31 H 0.144 0.856 32 H 0.158 0.842 33 H 0.177 0.823 34 H 0.150 0.850 35 H 0.072 0.928 36 H 0.120 0.880 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.193 0.807 40 H 0.052 0.948 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.107 0.893 48 H 0.143 0.857 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.990 -19.115 0.630 19.537 hybrid contribution 1.193 -0.217 0.524 1.321 sum 5.183 -19.331 1.154 20.047 Atomic orbital electron populations 1.24754 0.95585 1.03556 0.95840 1.21955 0.95664 0.95323 1.02783 1.19620 0.93642 0.93978 0.96458 1.21482 0.93392 0.98319 0.99954 1.21210 1.00524 0.90910 0.96470 1.19867 0.94369 0.92894 1.07989 1.18795 0.83485 0.84214 0.78939 1.90715 1.27845 1.83428 1.44131 1.48061 1.34520 1.10625 1.39311 1.21892 0.87754 1.02051 0.88708 1.22400 1.01389 0.98430 0.96081 1.20348 0.87598 0.89336 0.95659 0.93701 1.42557 1.32354 1.56172 1.06683 1.20310 1.07783 1.24907 0.91906 0.91668 1.26906 1.02634 0.99741 1.00021 1.71000 1.38969 1.49169 1.03464 0.82675 0.74007 0.75818 0.72661 1.20453 1.20903 1.22527 1.21670 0.97338 0.97687 0.94537 0.89756 1.21328 0.97179 0.95078 1.00617 1.21786 0.96771 1.02193 0.99573 1.21556 0.97554 0.82678 0.98007 1.21355 0.92418 0.99493 0.97553 1.21466 1.01164 0.91030 1.00764 0.87912 0.85553 0.84225 0.82323 0.85026 0.92800 0.87986 0.91490 0.90956 0.80729 0.94817 0.91927 0.93920 0.91757 0.91941 0.93157 0.93304 0.89335 0.85679 0.83369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 14.15 66.65 0.94 -0.82 16 2 C -0.14 -1.80 9.90 23.59 0.23 -1.57 16 3 C -0.04 -0.67 5.87 -20.07 -0.12 -0.78 16 4 C -0.11 -2.07 9.76 22.48 0.22 -1.85 16 5 C -0.07 -1.71 9.63 22.48 0.22 -1.49 16 6 C -0.15 -4.16 5.08 -20.05 -0.10 -4.27 16 7 C 0.56 18.91 7.30 86.74 0.63 19.54 16 8 O -0.58 -22.92 16.36 -3.94 -0.06 -22.99 16 9 N -0.59 -19.94 2.97 -822.50 -2.44 -22.39 16 10 C 0.12 3.83 4.66 86.36 0.40 4.23 16 11 C -0.14 -4.71 5.78 30.67 0.18 -4.54 16 12 C 0.18 6.73 2.53 45.02 0.11 6.85 16 13 H 0.04 1.76 8.08 -2.38 -0.02 1.74 16 14 N -0.73 -34.30 3.72 -322.81 -1.20 -35.50 16 15 C -0.32 -16.81 9.93 84.04 0.83 -15.98 16 16 H 0.07 3.38 7.83 -2.91 -0.02 3.36 16 17 C -0.10 -5.69 5.50 84.86 0.47 -5.22 16 18 N -0.98 -59.65 13.70 21.65 0.30 -59.36 16 19 Si 1.12 50.86 29.92 68.60 2.05 52.91 16 20 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 21 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 23 C -0.09 -3.04 2.14 -10.72 -0.02 -3.06 16 24 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 25 C -0.10 -3.36 5.19 30.60 0.16 -3.20 16 26 C -0.15 -3.88 9.68 71.98 0.70 -3.18 16 27 C 0.12 4.34 5.04 86.36 0.44 4.78 16 28 C -0.09 -2.26 7.37 22.48 0.17 -2.09 16 29 C -0.13 -2.58 9.38 22.47 0.21 -2.37 16 30 H 0.10 1.14 6.02 -2.91 -0.02 1.13 16 31 H 0.13 0.87 8.06 -2.91 -0.02 0.85 16 32 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 33 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 35 H 0.05 2.06 7.72 -2.39 -0.02 2.04 16 36 H 0.10 2.87 4.81 -2.39 -0.01 2.86 16 37 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.36 17.94 4.78 -92.71 -0.44 17.49 16 40 H 0.24 14.77 6.77 -92.71 -0.63 14.14 16 41 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.04 1.63 7.70 -2.39 -0.02 1.61 16 43 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.05 1.37 6.70 -2.39 -0.02 1.35 16 46 H 0.05 1.91 6.64 -2.39 -0.02 1.89 16 47 H 0.09 3.10 5.72 -2.38 -0.01 3.08 16 48 H 0.13 3.31 6.71 -2.91 -0.02 3.29 16 49 H 0.15 2.40 6.14 -2.91 -0.02 2.38 16 Total: -1.00 -67.81 383.58 4.95 -62.85 By element: Atomic # 1 Polarization: 38.83 SS G_CDS: 0.65 Total: 39.48 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 5.66 Total: -15.02 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -3.35 Total: -117.24 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.06 Total: -22.99 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 2.05 Total: 52.91 kcal Total: -67.81 4.95 -62.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037920467.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.202 kcal (2) G-P(sol) polarization free energy of solvation -67.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds