Wall clock time and date at job start Tue Mar 31 2020 15:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50702 * 120.00134 * 2 1 4 4 H 1.08995 * 109.46982 * 0.02562 * 3 2 1 5 5 C 1.50697 * 109.46837 * 119.99944 * 3 2 1 6 6 O 1.21289 * 119.99683 * 106.15899 * 5 3 2 7 7 N 1.34772 * 120.00519 * 286.15498 * 5 3 2 8 8 C 1.46927 * 120.62867 * 355.91312 * 7 5 3 9 9 C 1.53189 * 108.77970 * 233.62974 * 8 7 5 10 10 C 1.53040 * 109.33766 * 305.35179 * 9 8 7 11 11 C 1.53099 * 109.50545 * 61.34398 * 10 9 8 12 12 C 1.46923 * 120.63685 * 175.93575 * 7 5 3 13 13 H 1.09001 * 109.58998 * 246.16073 * 12 7 5 14 14 C 1.53007 * 109.58171 * 6.58355 * 12 7 5 15 15 N 1.46500 * 109.46867 * 179.91676 * 14 12 7 16 16 C 1.36937 * 120.00041 * 185.26665 * 15 14 12 17 17 H 1.08001 * 120.00063 * 4.97796 * 16 15 14 18 18 C 1.38810 * 120.00257 * 184.97246 * 16 15 14 19 19 N 1.31622 * 120.00500 * 184.52447 * 18 16 15 20 20 Si 1.86803 * 119.99899 * 4.52638 * 18 16 15 21 21 H 1.48497 * 109.47301 * 93.80467 * 20 18 16 22 22 H 1.48502 * 109.47177 * 213.80721 * 20 18 16 23 23 H 1.48500 * 109.47069 * 333.80261 * 20 18 16 24 24 C 1.50697 * 109.47130 * 239.99991 * 3 2 1 25 25 C 1.38237 * 120.00115 * 305.80624 * 24 3 2 26 26 C 1.38232 * 119.99992 * 179.76832 * 25 24 3 27 27 C 1.38234 * 120.00161 * 0.49888 * 26 25 24 28 28 C 1.38238 * 119.99675 * 359.75114 * 27 26 25 29 29 C 1.38230 * 120.00079 * 359.97438 * 28 27 26 30 30 H 1.07997 * 120.00408 * 180.02562 * 1 2 3 31 31 H 1.08006 * 119.99438 * 359.97438 * 1 2 3 32 32 H 1.07997 * 119.99934 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.58864 * 113.84279 * 8 7 5 34 34 H 1.09006 * 109.70436 * 353.49237 * 8 7 5 35 35 H 1.09007 * 109.49501 * 65.31588 * 9 8 7 36 36 H 1.08998 * 109.50364 * 185.37739 * 9 8 7 37 37 H 1.09003 * 109.46312 * 181.40022 * 10 9 8 38 38 H 1.08995 * 109.45703 * 301.35468 * 10 9 8 39 39 H 1.09006 * 109.49280 * 178.70138 * 11 10 9 40 40 H 1.09003 * 109.51487 * 58.62999 * 11 10 9 41 41 H 1.09002 * 109.47041 * 299.91306 * 14 12 7 42 42 H 1.08996 * 109.47223 * 59.91711 * 14 12 7 43 43 H 0.97000 * 120.00444 * 5.26172 * 15 14 12 44 44 H 0.96992 * 120.00318 * 180.02562 * 19 18 16 45 45 H 1.08004 * 119.99472 * 359.97438 * 25 24 3 46 46 H 1.07999 * 120.00373 * 180.23340 * 26 25 24 47 47 H 1.07995 * 120.00697 * 179.72845 * 27 26 25 48 48 H 1.08005 * 119.99782 * 179.97438 * 28 27 26 49 49 H 1.08005 * 120.00181 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3553 2.1335 0.0005 5 6 2.9299 1.3848 1.2305 6 8 4.1309 1.2431 1.1368 7 7 2.3704 1.6137 2.4350 8 6 0.9296 1.8762 2.5534 9 6 0.7286 3.1872 3.3200 10 6 1.4647 3.1090 4.6595 11 6 2.9632 2.9200 4.4089 12 6 3.1895 1.6061 3.6547 13 1 2.8970 0.7671 4.2861 14 6 4.6673 1.4782 3.2791 15 7 5.4818 1.4728 4.4968 16 6 6.8482 1.4755 4.4066 17 1 7.3255 1.5628 3.4417 18 6 7.6199 1.3662 5.5552 19 7 8.9307 1.4582 5.4788 20 14 6.7981 1.0885 7.2096 21 1 6.7495 -0.3670 7.5001 22 1 7.5746 1.7793 8.2703 23 1 5.4168 1.6325 7.1737 24 6 2.9300 1.3849 -1.2304 25 6 3.8264 0.3709 -1.5115 26 6 4.6177 0.4418 -2.6428 27 6 4.5200 1.5317 -3.4874 28 6 3.6272 2.5482 -3.2036 29 6 2.8319 2.4745 -2.0754 30 1 -0.5401 -0.9352 0.0004 31 1 -0.5399 0.9354 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 0.4527 1.0594 3.0950 34 1 0.4889 1.9624 1.5601 35 1 1.1263 4.0159 2.7341 36 1 -0.3351 3.3451 3.4981 37 1 1.3024 4.0312 5.2175 38 1 1.0836 2.2651 5.2345 39 1 3.4902 2.8875 5.3626 40 1 3.3404 3.7512 3.8131 41 1 4.8242 0.5480 2.7329 42 1 4.9571 2.3212 2.6519 43 1 5.0533 1.4673 5.3670 44 1 9.4699 1.3815 6.2813 45 1 3.9061 -0.4784 -0.8490 46 1 5.3154 -0.3522 -2.8644 47 1 5.1413 1.5892 -4.3689 48 1 3.5511 3.3999 -3.8633 49 1 2.1347 3.2689 -1.8534 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326773432.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:01 Heat of formation + Delta-G solvation = 43.157647 kcal Electronic energy + Delta-G solvation = -28890.046721 eV Core-core repulsion = 25204.490979 eV Total energy + Delta-G solvation = -3685.555742 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.81921 -39.13841 -37.25494 -35.71565 -34.55039 -32.72163 -31.92709 -31.32147 -30.85293 -30.13044 -27.65178 -26.07838 -24.43668 -23.03878 -22.75261 -21.82125 -21.12910 -21.01879 -20.00176 -18.83238 -17.66155 -17.05635 -16.73870 -15.90771 -15.52755 -15.22705 -14.76260 -14.69457 -14.49874 -14.28495 -14.06351 -13.79059 -13.61339 -13.40079 -13.29213 -13.18665 -12.71774 -12.61454 -12.57809 -12.32924 -12.08537 -11.82472 -11.50639 -11.33615 -11.14423 -11.01271 -10.96544 -10.84048 -10.73101 -10.59308 -10.32826 -10.17066 -9.83030 -9.46736 -8.95261 -8.82731 -8.75830 -8.62326 -8.35833 -7.02803 -5.63605 -2.97042 1.30052 1.45435 1.94108 2.79984 3.01982 3.41165 3.46520 3.51245 3.81846 4.43871 4.56286 4.59510 4.69198 4.72398 4.80475 4.82074 4.92357 4.96632 5.01793 5.13890 5.15061 5.19966 5.31079 5.34823 5.47200 5.51134 5.55497 5.65296 5.68376 5.71862 5.74357 5.86248 5.91905 5.93478 5.97348 6.05537 6.12759 6.16816 6.26927 6.34879 6.44770 6.46279 6.53779 6.60345 6.65501 7.00485 7.05228 7.23632 7.54102 8.16461 8.38681 8.56734 9.36840 10.08596 10.29564 11.55528 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.011241 B = 0.004058 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.314678 B = 6897.490616 C = 8611.711721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.135 4.135 3 C -0.040 4.040 4 H 0.100 0.900 5 C 0.515 3.485 6 O -0.499 6.499 7 N -0.603 5.603 8 C 0.107 3.893 9 C -0.135 4.135 10 C -0.121 4.121 11 C -0.128 4.128 12 C 0.137 3.863 13 H 0.068 0.932 14 C 0.168 3.832 15 N -0.763 5.763 16 C -0.228 4.228 17 H 0.089 0.911 18 C -0.001 4.001 19 N -0.938 5.938 20 Si 0.886 3.114 21 H -0.287 1.287 22 H -0.293 1.293 23 H -0.280 1.280 24 C -0.065 4.065 25 C -0.078 4.078 26 C -0.121 4.121 27 C -0.120 4.120 28 C -0.125 4.125 29 C -0.113 4.113 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.043 0.957 43 H 0.356 0.644 44 H 0.257 0.743 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.504 0.854 -14.091 27.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.154 4.154 3 C -0.062 4.062 4 H 0.118 0.882 5 C 0.301 3.699 6 O -0.372 6.372 7 N -0.338 5.338 8 C -0.016 4.016 9 C -0.174 4.174 10 C -0.158 4.158 11 C -0.167 4.167 12 C 0.034 3.966 13 H 0.086 0.914 14 C 0.042 3.958 15 N -0.411 5.411 16 C -0.358 4.358 17 H 0.107 0.893 18 C -0.196 4.196 19 N -0.587 5.587 20 Si 0.717 3.283 21 H -0.213 1.213 22 H -0.219 1.219 23 H -0.207 1.207 24 C -0.065 4.065 25 C -0.096 4.096 26 C -0.139 4.139 27 C -0.138 4.138 28 C -0.143 4.143 29 C -0.131 4.131 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.135 0.865 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.189 0.811 44 H 0.067 0.933 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -22.616 0.771 -14.256 26.745 hybrid contribution -0.542 -0.072 1.412 1.514 sum -23.158 0.699 -12.844 26.491 Atomic orbital electron populations 1.23872 0.95377 1.02214 1.00538 1.22615 0.95725 0.96904 1.00130 1.19520 0.96690 0.98038 0.91934 0.88166 1.20269 0.88619 0.77276 0.83740 1.90888 1.14034 1.47700 1.84606 1.48062 1.08399 1.70953 1.06380 1.21796 0.81221 0.97371 1.01193 1.21936 1.00511 0.97652 0.97272 1.21558 0.95853 1.01890 0.96523 1.21966 0.95318 0.97885 1.01497 1.21619 0.93210 0.97172 0.84589 0.91369 1.21269 0.85167 1.01155 0.88160 1.43044 1.03989 1.91315 1.02729 1.19068 0.80433 1.40969 0.95364 0.89281 1.24682 0.95146 1.02661 0.97092 1.69714 1.03299 1.57879 1.27817 0.86512 0.78284 0.77904 0.85552 1.21348 1.21923 1.20683 1.19188 0.97340 0.95369 0.94606 1.20946 0.94271 0.98468 0.95895 1.21143 0.99285 0.98533 0.94948 1.21136 0.98594 0.94349 0.99683 1.21027 0.96877 0.98881 0.97540 1.20942 0.99934 0.97184 0.95015 0.87759 0.88335 0.86529 0.91394 0.89926 0.91492 0.90985 0.91791 0.91963 0.90263 0.91321 0.93208 0.93908 0.81092 0.93286 0.86070 0.86063 0.86299 0.86244 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 13.41 29.01 0.39 -0.90 16 2 C -0.14 -1.27 7.77 -36.03 -0.28 -1.55 16 3 C -0.04 -0.45 1.88 -94.08 -0.18 -0.63 16 4 H 0.10 0.90 6.12 -51.93 -0.32 0.58 16 5 C 0.51 7.70 6.78 -10.99 -0.07 7.63 16 6 O -0.50 -9.74 10.57 5.55 0.06 -9.68 16 7 N -0.60 -8.23 2.97 -165.22 -0.49 -8.72 16 8 C 0.11 1.01 5.88 -3.71 -0.02 0.99 16 9 C -0.14 -1.22 6.08 -26.61 -0.16 -1.38 16 10 C -0.12 -1.33 5.89 -26.66 -0.16 -1.48 16 11 C -0.13 -1.94 5.12 -26.58 -0.14 -2.08 16 12 C 0.14 2.28 3.04 -67.60 -0.21 2.07 16 13 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 14 C 0.17 3.72 4.10 -4.04 -0.02 3.70 16 15 N -0.76 -19.43 5.06 -59.91 -0.30 -19.73 16 16 C -0.23 -6.91 10.47 -15.06 -0.16 -7.06 16 17 H 0.09 2.95 8.06 -52.49 -0.42 2.53 16 18 C 0.00 -0.03 5.50 -17.43 -0.10 -0.13 16 19 N -0.94 -30.78 13.97 55.49 0.78 -30.00 16 20 Si 0.89 22.95 27.99 -169.99 -4.76 18.20 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 23 H -0.28 -6.68 6.18 56.52 0.35 -6.33 16 24 C -0.06 -0.81 4.45 -104.62 -0.47 -1.27 16 25 C -0.08 -1.04 8.03 -39.58 -0.32 -1.35 16 26 C -0.12 -1.48 10.05 -39.59 -0.40 -1.88 16 27 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 28 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 29 C -0.11 -1.28 9.67 -39.59 -0.38 -1.66 16 30 H 0.10 0.62 8.06 -52.49 -0.42 0.20 16 31 H 0.10 0.55 7.25 -52.48 -0.38 0.17 16 32 H 0.12 1.15 7.65 -52.49 -0.40 0.75 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.61 4.08 -51.93 -0.21 0.40 16 35 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.33 7.19 -51.93 -0.37 0.96 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.05 1.21 6.41 -51.93 -0.33 0.87 16 42 H 0.04 1.04 7.07 -51.93 -0.37 0.68 16 43 H 0.36 8.65 4.53 -40.82 -0.18 8.46 16 44 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 45 H 0.12 1.64 7.54 -52.48 -0.40 1.24 16 46 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 47 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 48 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 49 H 0.12 1.07 7.96 -52.48 -0.42 0.65 16 LS Contribution 380.56 15.07 5.73 5.73 Total: -1.00 -35.65 380.56 -10.08 -45.73 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -7.64 Total: 8.93 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -3.45 Total: -10.45 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.02 Total: -58.45 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.06 Total: -9.68 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.76 Total: 18.20 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.65 -10.08 -45.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326773432.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.885 kcal (2) G-P(sol) polarization free energy of solvation -35.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds