Wall clock time and date at job start Tue Mar 31 2020 14:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.87386 * 2 1 4 4 C 1.54329 * 109.88132 * 238.98561 * 2 1 3 5 5 C 1.55149 * 102.94487 * 262.62353 * 4 2 1 6 6 H 1.08996 * 111.00487 * 82.60934 * 5 4 2 7 7 N 1.46503 * 111.00409 * 206.42615 * 5 4 2 8 8 C 1.36936 * 119.99714 * 205.00157 * 7 5 4 9 9 H 1.08004 * 120.00176 * 359.97438 * 8 7 5 10 10 C 1.38814 * 120.00147 * 180.02562 * 8 7 5 11 11 N 1.31623 * 119.99335 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00474 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.46914 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47077 * 119.99753 * 12 10 8 15 15 H 1.48492 * 109.47288 * 239.99852 * 12 10 8 16 16 C 1.54908 * 101.58096 * 324.49989 * 5 4 2 17 17 N 1.47021 * 110.01121 * 121.10658 * 2 1 3 18 18 C 1.34777 * 125.64491 * 300.49889 * 17 2 1 19 19 O 1.21287 * 120.00110 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00307 * 180.02562 * 18 17 2 21 21 C 1.52993 * 109.47598 * 175.38100 * 20 18 17 22 22 C 1.50707 * 115.55073 * 295.00143 * 21 20 18 23 23 C 1.38228 * 120.00121 * 113.83286 * 22 21 20 24 24 C 1.38242 * 119.99953 * 179.74222 * 23 22 21 25 25 C 1.38235 * 119.99824 * 0.55750 * 24 23 22 26 26 C 1.38236 * 119.99838 * 359.69851 * 25 24 23 27 27 C 1.38231 * 120.00235 * 0.02591 * 26 25 24 28 28 C 1.53000 * 117.50218 * 149.32970 * 21 20 18 29 29 C 1.53003 * 117.50089 * 80.66692 * 21 20 18 30 30 H 1.08999 * 109.47205 * 180.69368 * 1 2 3 31 31 H 1.09000 * 109.47214 * 300.70087 * 1 2 3 32 32 H 1.09004 * 109.47167 * 60.69653 * 1 2 3 33 33 H 1.08998 * 110.71645 * 20.99091 * 4 2 1 34 34 H 1.08997 * 110.71812 * 144.25313 * 4 2 1 35 35 H 0.96999 * 119.99939 * 24.99494 * 7 5 4 36 36 H 0.97001 * 119.99337 * 180.02562 * 11 10 8 37 37 H 1.08999 * 110.36932 * 155.84806 * 16 5 4 38 38 H 1.08998 * 110.36738 * 278.16946 * 16 5 4 39 39 H 1.09005 * 109.47091 * 295.38635 * 20 18 17 40 40 H 1.09003 * 109.46579 * 55.37482 * 20 18 17 41 41 H 1.08000 * 120.00196 * 0.02562 * 23 22 21 42 42 H 1.07997 * 119.99808 * 180.27685 * 24 23 22 43 43 H 1.07995 * 120.00283 * 179.72189 * 25 24 23 44 44 H 1.08003 * 119.99861 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.00247 * 179.97438 * 27 26 25 46 46 H 1.08997 * 117.49693 * 359.97438 * 28 21 20 47 47 H 1.08990 * 117.50062 * 145.01831 * 28 21 20 48 48 H 1.08997 * 117.50137 * 214.98046 * 29 21 20 49 49 H 1.08997 * 117.49310 * 359.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2438 5 6 2.3556 -2.1673 -0.6947 6 1 1.4504 -2.7737 -0.6625 7 7 3.3979 -2.8264 -1.4857 8 6 3.4638 -4.1935 -1.5277 9 1 2.7477 -4.7859 -0.9774 10 6 4.4517 -4.8181 -2.2767 11 7 5.3246 -4.0961 -2.9469 12 14 4.5421 -6.6830 -2.3335 13 1 3.4550 -7.2569 -1.5002 14 1 4.3866 -7.1436 -3.7367 15 1 5.8568 -7.1310 -1.8083 16 6 2.8617 -1.8474 0.7340 17 7 2.0331 -0.7137 1.1828 18 6 1.7796 -0.3852 2.4651 19 8 1.0811 0.5733 2.7189 20 6 2.3639 -1.2089 3.5837 21 6 2.0215 -0.5612 4.9267 22 6 2.6321 0.7953 5.1687 23 6 1.8220 1.9115 5.2605 24 6 2.3817 3.1550 5.4877 25 6 3.7525 3.2837 5.6116 26 6 4.5630 2.1681 5.5145 27 6 4.0029 0.9239 5.2930 28 6 1.8528 -1.4854 6.1343 29 6 0.6275 -0.8209 5.5015 30 1 -0.3633 -1.0276 0.0124 31 1 -0.3634 0.5247 0.8836 32 1 -0.3634 0.5030 -0.8962 33 1 1.2909 -0.7884 -2.0202 34 1 2.9641 -0.2792 -1.6203 35 1 4.0411 -2.2944 -1.9797 36 1 6.0147 -4.5326 -3.4706 37 1 2.7164 -2.7062 1.3892 38 1 3.9134 -1.5620 0.7088 39 1 1.9477 -2.2158 3.5492 40 1 3.4468 -1.2595 3.4701 41 1 0.7514 1.8116 5.1593 42 1 1.7484 4.0264 5.5639 43 1 4.1901 4.2557 5.7846 44 1 5.6340 2.2688 5.6109 45 1 4.6362 0.0524 5.2167 46 1 1.9853 -2.5550 5.9718 47 1 2.1831 -1.1124 7.1036 48 1 0.1523 -0.0110 6.0548 49 1 -0.0457 -1.4530 4.9224 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988932494.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:50 Heat of formation + Delta-G solvation = 26.898298 kcal Electronic energy + Delta-G solvation = -28238.170890 eV Core-core repulsion = 24551.910089 eV Total energy + Delta-G solvation = -3686.260801 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.36356 -39.35614 -37.61824 -36.63816 -34.17672 -31.97960 -31.33640 -30.92574 -30.58048 -28.97916 -28.25558 -25.43141 -23.96305 -23.36815 -23.09353 -21.93287 -21.81002 -20.29339 -19.45389 -18.53356 -17.39058 -17.02220 -16.73351 -15.70668 -15.59925 -15.07174 -14.79785 -14.73452 -14.56964 -14.21107 -13.92096 -13.41346 -13.38423 -13.20316 -12.94097 -12.93242 -12.66492 -12.49585 -12.25332 -12.20860 -11.81307 -11.64181 -11.59472 -11.21645 -11.16364 -11.05653 -11.00246 -10.77130 -10.64900 -10.53537 -10.25634 -10.03926 -10.01017 -9.80565 -9.45876 -9.04804 -8.88339 -8.63416 -8.27724 -7.12576 -5.88955 -3.19860 1.35153 1.44446 2.93904 3.18593 3.36286 3.42447 3.44496 3.66559 3.85881 4.46460 4.48430 4.62253 4.70542 4.78254 4.96639 5.01904 5.02155 5.13323 5.14946 5.23543 5.33920 5.44458 5.47769 5.50933 5.52675 5.59680 5.60913 5.63294 5.70925 5.75176 5.83985 5.85736 5.86807 6.01216 6.04772 6.08480 6.11860 6.13143 6.22190 6.30033 6.45557 6.48750 6.52140 6.54178 6.68285 6.69743 6.84261 7.01758 7.59814 7.89362 8.28431 8.49375 9.40562 9.94430 10.29297 11.33046 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.002930 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.290360 B = 9554.984052 C = 9962.284747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.140 3.860 3 H 0.066 0.934 4 C -0.139 4.139 5 C 0.174 3.826 6 H 0.067 0.933 7 N -0.712 5.712 8 C -0.248 4.248 9 H 0.073 0.927 10 C -0.009 4.009 11 N -0.929 5.929 12 Si 0.908 3.092 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.291 1.291 16 C 0.072 3.928 17 N -0.612 5.612 18 C 0.529 3.471 19 O -0.538 6.538 20 C -0.097 4.097 21 C -0.069 4.069 22 C -0.037 4.037 23 C -0.084 4.084 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.125 4.125 27 C -0.114 4.114 28 C -0.167 4.167 29 C -0.157 4.157 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.387 0.613 36 H 0.256 0.744 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.505 10.772 16.772 20.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.037 3.963 3 H 0.085 0.915 4 C -0.178 4.178 5 C 0.062 3.938 6 H 0.085 0.915 7 N -0.352 5.352 8 C -0.379 4.379 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.576 5.576 12 Si 0.738 3.262 13 H -0.205 1.205 14 H -0.218 1.218 15 H -0.218 1.218 16 C -0.054 4.054 17 N -0.346 5.346 18 C 0.317 3.683 19 O -0.416 6.416 20 C -0.137 4.137 21 C -0.069 4.069 22 C -0.037 4.037 23 C -0.102 4.102 24 C -0.144 4.144 25 C -0.144 4.144 26 C -0.143 4.143 27 C -0.132 4.132 28 C -0.204 4.204 29 C -0.194 4.194 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.221 0.779 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.141 0.859 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.896 11.090 16.964 21.408 hybrid contribution 0.553 -0.913 -0.375 1.132 sum -6.342 10.177 16.590 20.470 Atomic orbital electron populations 1.22114 0.95172 1.02120 1.02298 1.21434 0.94230 0.95821 0.84862 0.91549 1.23026 1.01624 0.97192 0.95909 1.21265 0.92719 0.91291 0.88537 0.91525 1.42340 1.33460 1.04070 1.55317 1.19294 1.11234 0.82508 1.24893 0.90926 1.24775 0.97960 0.98010 0.99779 1.69673 1.19020 1.34080 1.34834 0.86118 0.77389 0.85288 0.77360 1.20451 1.21759 1.21755 1.23469 0.94946 0.87191 0.99751 1.48637 1.50414 1.30972 1.04599 1.20111 0.80878 0.85037 0.82263 1.90637 1.38871 1.28812 1.83276 1.21172 1.02669 0.99093 0.90774 1.19667 1.00480 0.93626 0.93144 1.18903 0.92918 0.92961 0.98932 1.20993 1.00151 0.91716 0.97365 1.21121 0.95083 0.97394 1.00849 1.21098 0.93904 0.98413 1.00982 1.21063 0.99584 0.92722 1.00978 1.20968 0.94415 0.97542 1.00259 1.23150 1.02485 0.98325 0.96458 1.22965 0.90537 1.02903 1.02958 0.92601 0.91485 0.92173 0.90265 0.90710 0.77861 0.93364 0.91457 0.91397 0.88593 0.88718 0.85935 0.86440 0.86529 0.86327 0.86291 0.88362 0.88617 0.88652 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.06 37.16 0.34 -1.86 16 2 C 0.14 2.10 3.49 -66.95 -0.23 1.87 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.14 -2.18 6.14 -24.90 -0.15 -2.33 16 5 C 0.17 3.20 3.71 -65.79 -0.24 2.96 16 6 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 7 N -0.71 -16.56 5.24 -51.35 -0.27 -16.83 16 8 C -0.25 -6.46 9.96 -15.06 -0.15 -6.61 16 9 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 10 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 11 N -0.93 -26.80 13.06 55.49 0.72 -26.08 16 12 Si 0.91 21.40 29.55 -169.99 -5.02 16.37 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 C 0.07 1.20 6.38 -2.53 -0.02 1.18 16 17 N -0.61 -9.45 3.08 -163.02 -0.50 -9.95 16 18 C 0.53 8.05 7.46 -10.99 -0.08 7.97 16 19 O -0.54 -9.18 13.51 5.55 0.07 -9.11 16 20 C -0.10 -1.21 4.45 -27.89 -0.12 -1.33 16 21 C -0.07 -0.79 1.20 -155.66 -0.19 -0.98 16 22 C -0.04 -0.47 4.42 -104.62 -0.46 -0.93 16 23 C -0.08 -1.07 8.28 -39.58 -0.33 -1.39 16 24 C -0.13 -1.45 10.05 -39.58 -0.40 -1.84 16 25 C -0.13 -1.36 10.05 -39.58 -0.40 -1.76 16 26 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 27 C -0.11 -1.35 9.67 -39.58 -0.38 -1.73 16 28 C -0.17 -1.58 9.93 -26.69 -0.26 -1.84 16 29 C -0.16 -1.65 9.37 -26.69 -0.25 -1.90 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.00 6.76 -51.93 -0.35 0.65 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.17 7.83 -51.93 -0.41 0.77 16 34 H 0.07 1.20 8.00 -51.93 -0.42 0.79 16 35 H 0.39 9.63 7.76 -40.82 -0.32 9.32 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.07 1.06 7.61 -51.93 -0.40 0.67 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.10 1.08 7.99 -51.93 -0.41 0.66 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.12 1.55 7.06 -52.49 -0.37 1.18 16 42 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 43 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 45 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 46 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.10 0.97 7.17 -51.93 -0.37 0.59 16 49 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 396.72 15.07 5.98 5.98 Total: -1.00 -29.72 396.72 -10.93 -40.66 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -8.08 Total: 11.61 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -3.83 Total: -12.64 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.05 Total: -52.87 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.07 Total: -9.11 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.72 -10.93 -40.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988932494.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.554 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds