Wall clock time and date at job start Tue Mar 31 2020 14:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.87386 * 2 1 4 4 C 1.54329 * 109.88132 * 238.98561 * 2 1 3 5 5 C 1.55149 * 102.94487 * 262.62353 * 4 2 1 6 6 H 1.08996 * 111.00487 * 82.60934 * 5 4 2 7 7 N 1.46503 * 111.00409 * 206.42615 * 5 4 2 8 8 C 1.36936 * 119.99714 * 205.00157 * 7 5 4 9 9 H 1.08004 * 120.00176 * 359.97438 * 8 7 5 10 10 C 1.38814 * 120.00147 * 180.02562 * 8 7 5 11 11 N 1.31623 * 119.99335 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00474 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.46914 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47077 * 119.99753 * 12 10 8 15 15 H 1.48492 * 109.47288 * 239.99852 * 12 10 8 16 16 C 1.54908 * 101.58096 * 324.49989 * 5 4 2 17 17 N 1.47021 * 110.01121 * 121.10658 * 2 1 3 18 18 C 1.34777 * 125.64491 * 300.49889 * 17 2 1 19 19 O 1.21287 * 120.00110 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00307 * 180.02562 * 18 17 2 21 21 C 1.52993 * 109.47598 * 175.38100 * 20 18 17 22 22 C 1.50707 * 115.55073 * 295.00143 * 21 20 18 23 23 C 1.38228 * 120.00121 * 113.83286 * 22 21 20 24 24 C 1.38242 * 119.99953 * 179.74222 * 23 22 21 25 25 C 1.38235 * 119.99824 * 0.55750 * 24 23 22 26 26 C 1.38236 * 119.99838 * 359.69851 * 25 24 23 27 27 C 1.38231 * 120.00235 * 0.02591 * 26 25 24 28 28 C 1.53000 * 117.50218 * 149.32970 * 21 20 18 29 29 C 1.53003 * 117.50089 * 80.66692 * 21 20 18 30 30 H 1.08999 * 109.47205 * 180.69368 * 1 2 3 31 31 H 1.09000 * 109.47214 * 300.70087 * 1 2 3 32 32 H 1.09004 * 109.47167 * 60.69653 * 1 2 3 33 33 H 1.08998 * 110.71645 * 20.99091 * 4 2 1 34 34 H 1.08997 * 110.71812 * 144.25313 * 4 2 1 35 35 H 0.96999 * 119.99939 * 24.99494 * 7 5 4 36 36 H 0.97001 * 119.99337 * 180.02562 * 11 10 8 37 37 H 1.08999 * 110.36932 * 155.84806 * 16 5 4 38 38 H 1.08998 * 110.36738 * 278.16946 * 16 5 4 39 39 H 1.09005 * 109.47091 * 295.38635 * 20 18 17 40 40 H 1.09003 * 109.46579 * 55.37482 * 20 18 17 41 41 H 1.08000 * 120.00196 * 0.02562 * 23 22 21 42 42 H 1.07997 * 119.99808 * 180.27685 * 24 23 22 43 43 H 1.07995 * 120.00283 * 179.72189 * 25 24 23 44 44 H 1.08003 * 119.99861 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.00247 * 179.97438 * 27 26 25 46 46 H 1.08997 * 117.49693 * 359.97438 * 28 21 20 47 47 H 1.08990 * 117.50062 * 145.01831 * 28 21 20 48 48 H 1.08997 * 117.50137 * 214.98046 * 29 21 20 49 49 H 1.08997 * 117.49310 * 359.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2438 5 6 2.3556 -2.1673 -0.6947 6 1 1.4504 -2.7737 -0.6625 7 7 3.3979 -2.8264 -1.4857 8 6 3.4638 -4.1935 -1.5277 9 1 2.7477 -4.7859 -0.9774 10 6 4.4517 -4.8181 -2.2767 11 7 5.3246 -4.0961 -2.9469 12 14 4.5421 -6.6830 -2.3335 13 1 3.4550 -7.2569 -1.5002 14 1 4.3866 -7.1436 -3.7367 15 1 5.8568 -7.1310 -1.8083 16 6 2.8617 -1.8474 0.7340 17 7 2.0331 -0.7137 1.1828 18 6 1.7796 -0.3852 2.4651 19 8 1.0811 0.5733 2.7189 20 6 2.3639 -1.2089 3.5837 21 6 2.0215 -0.5612 4.9267 22 6 2.6321 0.7953 5.1687 23 6 1.8220 1.9115 5.2605 24 6 2.3817 3.1550 5.4877 25 6 3.7525 3.2837 5.6116 26 6 4.5630 2.1681 5.5145 27 6 4.0029 0.9239 5.2930 28 6 1.8528 -1.4854 6.1343 29 6 0.6275 -0.8209 5.5015 30 1 -0.3633 -1.0276 0.0124 31 1 -0.3634 0.5247 0.8836 32 1 -0.3634 0.5030 -0.8962 33 1 1.2909 -0.7884 -2.0202 34 1 2.9641 -0.2792 -1.6203 35 1 4.0411 -2.2944 -1.9797 36 1 6.0147 -4.5326 -3.4706 37 1 2.7164 -2.7062 1.3892 38 1 3.9134 -1.5620 0.7088 39 1 1.9477 -2.2158 3.5492 40 1 3.4468 -1.2595 3.4701 41 1 0.7514 1.8116 5.1593 42 1 1.7484 4.0264 5.5639 43 1 4.1901 4.2557 5.7846 44 1 5.6340 2.2688 5.6109 45 1 4.6362 0.0524 5.2167 46 1 1.9853 -2.5550 5.9718 47 1 2.1831 -1.1124 7.1036 48 1 0.1523 -0.0110 6.0548 49 1 -0.0457 -1.4530 4.9224 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988932494.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:49 Heat of formation + Delta-G solvation = 12.965265 kcal Electronic energy + Delta-G solvation = -28238.775072 eV Core-core repulsion = 24551.910089 eV Total energy + Delta-G solvation = -3686.864982 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.45394 -40.40314 -38.76542 -37.66667 -35.92769 -33.32465 -32.99214 -31.78986 -31.42359 -30.13059 -29.75561 -26.70842 -25.78392 -24.34517 -23.90972 -23.18575 -22.63260 -21.69074 -20.48508 -19.67546 -19.28460 -17.99520 -17.89863 -16.98827 -16.68385 -16.41015 -15.97252 -15.87267 -15.55485 -15.44291 -15.10418 -14.89932 -14.66547 -14.38386 -14.24205 -14.14124 -13.86509 -13.53344 -13.37198 -13.19758 -13.03007 -12.97751 -12.81921 -12.79806 -12.37501 -12.25315 -12.10771 -12.02440 -12.01003 -11.87449 -11.70139 -11.43709 -11.39329 -11.01667 -10.89985 -10.56714 -9.76224 -9.60794 -9.48055 -9.03711 -7.93702 -5.23592 0.48926 0.56454 1.50940 1.52031 1.61164 1.74236 2.01288 2.57768 2.79666 2.98114 3.38424 3.47801 3.64120 3.77212 3.87205 3.90110 3.94151 3.99331 4.13347 4.17104 4.20029 4.31203 4.32078 4.37267 4.48948 4.52869 4.58091 4.59113 4.71892 4.74294 4.77488 4.80297 4.84237 4.92543 4.93459 5.03389 5.05865 5.16308 5.19870 5.23169 5.26258 5.26946 5.36418 5.50470 5.56866 5.63555 5.65942 5.80164 6.17129 6.27393 6.64480 7.27993 7.35051 8.06348 8.30479 9.29396 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.002930 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.290360 B = 9554.984052 C = 9962.284747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.140 3.860 3 H 0.063 0.937 4 C -0.127 4.127 5 C 0.169 3.831 6 H 0.066 0.934 7 N -0.724 5.724 8 C -0.240 4.240 9 H 0.081 0.919 10 C -0.070 4.070 11 N -0.967 5.967 12 Si 0.969 3.031 13 H -0.264 1.264 14 H -0.297 1.297 15 H -0.295 1.295 16 C 0.088 3.912 17 N -0.613 5.613 18 C 0.525 3.475 19 O -0.557 6.557 20 C -0.093 4.093 21 C -0.083 4.083 22 C -0.049 4.049 23 C -0.103 4.103 24 C -0.136 4.136 25 C -0.132 4.132 26 C -0.132 4.132 27 C -0.128 4.128 28 C -0.147 4.147 29 C -0.161 4.161 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.376 0.624 36 H 0.251 0.749 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.128 0.872 46 H 0.113 0.887 47 H 0.102 0.898 48 H 0.094 0.906 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.016 10.509 18.033 22.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.036 3.964 3 H 0.082 0.918 4 C -0.166 4.166 5 C 0.058 3.942 6 H 0.084 0.916 7 N -0.362 5.362 8 C -0.372 4.372 9 H 0.099 0.901 10 C -0.263 4.263 11 N -0.617 5.617 12 Si 0.798 3.202 13 H -0.188 1.188 14 H -0.225 1.225 15 H -0.223 1.223 16 C -0.038 4.038 17 N -0.347 5.347 18 C 0.315 3.685 19 O -0.435 6.435 20 C -0.133 4.133 21 C -0.083 4.083 22 C -0.049 4.049 23 C -0.121 4.121 24 C -0.154 4.154 25 C -0.150 4.150 26 C -0.150 4.150 27 C -0.146 4.146 28 C -0.184 4.184 29 C -0.198 4.198 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.209 0.791 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.132 0.868 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.146 0.854 46 H 0.131 0.869 47 H 0.120 0.880 48 H 0.112 0.888 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.455 10.841 18.269 22.514 hybrid contribution 0.647 -0.718 -0.722 1.206 sum -6.808 10.123 17.547 21.371 Atomic orbital electron populations 1.22025 0.93986 1.02075 1.02648 1.21452 0.95092 0.95455 0.84356 0.91842 1.22924 1.01809 0.95364 0.96510 1.21410 0.91378 0.92297 0.89118 0.91562 1.42460 1.34316 1.03391 1.56070 1.19664 1.10341 0.83875 1.23318 0.90145 1.25514 0.98370 1.01909 1.00510 1.69817 1.20015 1.35479 1.36409 0.85144 0.77346 0.80759 0.76919 1.18804 1.22460 1.22264 1.23102 0.94268 0.87884 0.98584 1.48671 1.50372 1.30667 1.05029 1.20639 0.80437 0.84986 0.82485 1.90633 1.39723 1.29728 1.83451 1.21196 1.02700 0.99262 0.90133 1.19671 1.01307 0.93888 0.93471 1.19080 0.93335 0.93367 0.99128 1.21072 0.99928 0.92551 0.98575 1.21392 0.95867 0.97574 1.00535 1.21416 0.93687 0.99514 1.00377 1.21392 1.00781 0.92540 1.00255 1.21187 0.94405 0.98376 1.00603 1.23207 1.00718 0.98701 0.95750 1.22979 0.90505 1.03139 1.03172 0.92716 0.92736 0.90253 0.89100 0.91233 0.79133 0.94045 0.90482 0.92582 0.87171 0.88358 0.86792 0.84938 0.84255 0.84365 0.85397 0.86911 0.88003 0.88778 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.06 71.98 0.65 -3.24 16 2 C 0.14 4.03 3.49 45.34 0.16 4.19 16 3 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 4 C -0.13 -3.87 6.14 31.78 0.20 -3.67 16 5 C 0.17 6.02 3.71 46.38 0.17 6.19 16 6 H 0.07 2.39 8.09 -2.39 -0.02 2.37 16 7 N -0.72 -33.42 5.24 -316.38 -1.66 -35.08 16 8 C -0.24 -12.32 9.96 84.03 0.84 -11.49 16 9 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 10 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 11 N -0.97 -56.50 13.06 21.65 0.28 -56.22 16 12 Si 0.97 43.84 29.55 68.60 2.03 45.87 16 13 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 14 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 15 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 16 C 0.09 2.80 6.38 86.86 0.55 3.35 16 17 N -0.61 -18.27 3.08 -788.06 -2.43 -20.70 16 18 C 0.52 15.46 7.46 87.66 0.65 16.12 16 19 O -0.56 -18.70 13.51 -3.05 -0.04 -18.74 16 20 C -0.09 -2.19 4.45 29.85 0.13 -2.05 16 21 C -0.08 -1.81 1.20 -52.93 -0.06 -1.88 16 22 C -0.05 -1.19 4.42 -19.86 -0.09 -1.28 16 23 C -0.10 -2.59 8.28 22.27 0.18 -2.40 16 24 C -0.14 -3.00 10.05 22.27 0.22 -2.78 16 25 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 26 C -0.13 -2.72 10.05 22.27 0.22 -2.49 16 27 C -0.13 -2.89 9.67 22.27 0.22 -2.67 16 28 C -0.15 -2.49 9.93 30.62 0.30 -2.19 16 29 C -0.16 -3.22 9.37 30.62 0.29 -2.93 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.57 6.76 -2.39 -0.02 1.56 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.09 2.55 7.83 -2.39 -0.02 2.53 16 34 H 0.07 2.20 8.00 -2.39 -0.02 2.18 16 35 H 0.38 18.91 7.76 -92.71 -0.72 18.19 16 36 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 37 H 0.08 2.31 7.61 -2.39 -0.02 2.29 16 38 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.11 2.24 7.99 -2.38 -0.02 2.22 16 40 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.11 2.94 7.06 -2.91 -0.02 2.92 16 42 H 0.13 2.38 8.06 -2.91 -0.02 2.35 16 43 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 44 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 45 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 46 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.09 1.87 7.17 -2.39 -0.02 1.86 16 49 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -62.92 396.72 3.72 -59.20 By element: Atomic # 1 Polarization: 40.48 SS G_CDS: 0.21 Total: 40.69 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 5.33 Total: -15.01 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -3.81 Total: -112.00 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.04 Total: -18.74 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -62.92 3.72 -59.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988932494.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.161 kcal (2) G-P(sol) polarization free energy of solvation -62.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds