Wall clock time and date at job start Tue Mar 31 2020 15:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46499 * 120.00414 * 2 1 4 4 C 1.50697 * 109.47084 * 269.99894 * 3 2 1 5 5 H 1.07996 * 120.00346 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99938 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99948 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00071 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47128 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47263 * 119.99286 * 8 6 4 11 11 H 1.48500 * 109.47032 * 239.99677 * 8 6 4 12 12 C 1.39681 * 119.99864 * 180.02562 * 2 1 3 13 13 C 1.38913 * 120.07057 * 359.97438 * 12 2 1 14 14 C 1.38106 * 119.92415 * 180.02562 * 13 12 2 15 15 C 1.38285 * 120.07208 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.92419 * 179.97438 * 15 14 13 17 17 N 1.46899 * 109.47107 * 89.99664 * 16 15 14 18 18 C 1.48613 * 111.00141 * 169.99752 * 17 16 15 19 19 H 1.09007 * 112.06643 * 41.74004 * 18 17 16 20 20 C 1.54457 * 104.51975 * 280.17296 * 18 17 16 21 21 C 1.54216 * 105.06131 * 336.01240 * 20 18 17 22 22 C 1.48619 * 110.99872 * 54.63438 * 17 16 15 23 23 H 1.08997 * 112.06908 * 317.70151 * 22 17 16 24 24 C 1.55234 * 106.70368 * 194.65816 * 22 17 16 25 25 C 1.51523 * 107.72800 * 301.58983 * 24 22 17 26 26 O 1.20766 * 121.00300 * 225.77061 * 25 24 22 27 27 C 1.51524 * 117.99674 * 45.74310 * 25 24 22 28 28 C 1.38286 * 120.15383 * 0.26802 * 15 14 13 29 29 C 1.38108 * 120.06868 * 359.45265 * 28 15 14 30 30 H 1.08998 * 109.47210 * 270.00296 * 1 2 3 31 31 H 1.09010 * 109.46805 * 29.99688 * 1 2 3 32 32 H 1.08996 * 109.47705 * 149.99880 * 1 2 3 33 33 H 1.08996 * 109.47221 * 29.99782 * 3 2 1 34 34 H 1.09003 * 109.46933 * 149.99871 * 3 2 1 35 35 H 0.96998 * 119.99847 * 180.02562 * 7 6 4 36 36 H 1.07997 * 120.03863 * 0.02562 * 13 12 2 37 37 H 1.07999 * 119.96140 * 179.97438 * 14 13 12 38 38 H 1.09002 * 109.47152 * 329.99751 * 16 15 14 39 39 H 1.09001 * 109.46980 * 209.99852 * 16 15 14 40 40 H 1.08999 * 110.32794 * 94.91452 * 20 18 17 41 41 H 1.09008 * 110.32283 * 217.11697 * 20 18 17 42 42 H 1.09005 * 110.32094 * 241.10823 * 21 20 18 43 43 H 1.08999 * 110.32240 * 118.90707 * 21 20 18 44 44 H 1.09003 * 109.64314 * 182.13655 * 24 22 17 45 45 H 1.08997 * 109.99736 * 61.24025 * 24 22 17 46 46 H 1.08996 * 109.80057 * 194.90020 * 27 25 24 47 47 H 1.08997 * 109.84403 * 74.06087 * 27 25 24 48 48 H 1.07999 * 119.96544 * 179.70952 * 28 15 14 49 49 H 1.08005 * 120.03586 * 180.27157 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1271 2.8773 -1.6727 7 7 3.5544 3.6174 -0.6731 8 14 3.4379 3.4169 -3.4339 9 1 2.8598 2.4169 -4.3673 10 1 2.8008 4.7380 -3.6666 11 1 4.9004 3.5244 -3.6678 12 6 2.1633 -1.2097 -0.0005 13 6 1.4702 -2.4136 -0.0005 14 6 2.1637 -3.6078 -0.0005 15 6 3.5466 -3.6061 0.0000 16 6 4.3000 -4.9112 0.0006 17 7 4.5453 -5.3357 -1.3842 18 6 5.4868 -6.4846 -1.4303 19 1 5.2762 -7.2181 -0.6520 20 6 6.8839 -5.8473 -1.2639 21 6 6.7188 -4.3897 -1.7399 22 6 5.2357 -4.2682 -2.1541 23 1 4.8235 -3.2810 -1.9454 24 6 5.1105 -4.6478 -3.6540 25 6 5.7418 -6.0128 -3.8387 26 8 6.4984 -6.2295 -4.7548 27 6 5.3958 -7.0977 -2.8390 28 6 4.2397 -2.4095 0.0061 29 6 3.5523 -1.2116 0.0003 30 1 -0.3633 0.0001 1.0276 31 1 -0.3633 0.8901 -0.5138 32 1 -0.3634 -0.8899 -0.5138 33 1 1.6085 2.0284 0.5138 34 1 3.1499 1.1382 0.5139 35 1 4.0313 4.4432 -0.8504 36 1 0.3902 -2.4156 -0.0005 37 1 1.6255 -4.5441 -0.0001 38 1 3.7107 -5.6707 0.5144 39 1 5.2523 -4.7808 0.5147 40 1 7.1890 -5.8717 -0.2178 41 1 7.6138 -6.3677 -1.8841 42 1 7.3675 -4.1946 -2.5939 43 1 6.9429 -3.6985 -0.9275 44 1 5.6362 -3.9124 -4.2632 45 1 4.0602 -4.6848 -3.9428 46 1 6.1030 -7.9221 -2.9293 47 1 4.3833 -7.4583 -3.0200 48 1 5.3197 -2.4117 0.0113 49 1 4.0942 -0.2774 0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231816632.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:12 Heat of formation + Delta-G solvation = 5.114582 kcal Electronic energy + Delta-G solvation = -28503.121276 eV Core-core repulsion = 24815.915863 eV Total energy + Delta-G solvation = -3687.205414 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.17952 -39.11773 -38.21153 -35.83831 -32.97008 -32.26481 -31.82053 -30.60742 -30.43606 -29.14112 -27.84204 -25.84190 -24.89902 -24.18222 -22.56624 -21.57581 -21.33039 -20.69779 -19.57900 -18.50915 -16.88114 -16.66223 -16.46128 -16.03925 -15.47187 -15.17063 -14.78777 -14.51986 -14.41795 -14.27761 -14.07111 -13.77314 -13.73792 -13.26793 -13.11954 -12.99229 -12.82083 -12.32168 -12.26306 -12.13257 -11.81775 -11.77744 -11.46284 -11.35567 -11.29966 -11.26579 -11.02345 -10.95833 -10.73461 -10.66868 -10.59051 -10.30917 -9.92013 -9.79719 -9.53375 -8.90808 -8.58123 -8.54687 -8.31353 -6.51470 -6.06030 -4.21521 1.86352 2.03289 2.15154 3.22697 3.31325 3.35906 3.78264 3.96499 4.10513 4.37567 4.41380 4.48398 4.56420 4.70090 4.76322 4.89373 5.04198 5.13958 5.17144 5.17882 5.23023 5.37762 5.43144 5.51479 5.57893 5.58702 5.66700 5.73263 5.74005 5.78865 5.84451 5.86749 5.95596 5.98716 6.04022 6.08023 6.23890 6.33288 6.37776 6.58697 6.69613 6.87843 6.94426 7.01011 7.14747 7.20700 7.30541 7.40425 7.53520 7.77271 8.11166 8.21559 8.43514 8.87949 9.45736 10.91650 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012680 B = 0.003451 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.752050 B = 8112.816155 C = 9395.939144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.614 5.614 3 C 0.248 3.752 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.243 3.757 13 C -0.222 4.222 14 C -0.051 4.051 15 C -0.174 4.174 16 C 0.101 3.899 17 N -0.500 5.500 18 C 0.069 3.931 19 H 0.101 0.899 20 C -0.156 4.156 21 C -0.157 4.157 22 C 0.066 3.934 23 H 0.121 0.879 24 C -0.158 4.158 25 C 0.369 3.631 26 O -0.468 6.468 27 C -0.156 4.156 28 C -0.070 4.070 29 C -0.187 4.187 30 H 0.036 0.964 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.030 0.970 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.108 0.892 46 H 0.088 0.912 47 H 0.106 0.894 48 H 0.108 0.892 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.536 -19.091 1.751 19.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.320 5.320 3 C 0.129 3.871 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.136 3.864 13 C -0.246 4.246 14 C -0.070 4.070 15 C -0.177 4.177 16 C -0.025 4.025 17 N -0.222 5.222 18 C -0.040 4.040 19 H 0.119 0.881 20 C -0.195 4.195 21 C -0.196 4.196 22 C -0.042 4.042 23 H 0.139 0.861 24 C -0.196 4.196 25 C 0.246 3.754 26 O -0.343 6.343 27 C -0.194 4.194 28 C -0.089 4.089 29 C -0.210 4.210 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.095 0.905 39 H 0.057 0.943 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.126 0.874 46 H 0.106 0.894 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.359 -18.939 1.099 19.019 hybrid contribution 0.922 0.790 -0.560 1.337 sum 2.281 -18.149 0.539 18.300 Atomic orbital electron populations 1.21481 0.81453 1.01981 0.99719 1.47122 1.04429 1.04646 1.75775 1.19293 0.92056 0.78755 0.97022 1.21610 1.36326 1.06433 0.92637 0.92176 1.24958 0.95399 0.96282 0.97378 1.69938 1.38354 1.14360 1.30706 0.86487 0.78076 0.78526 0.84679 1.19683 1.20925 1.20828 1.17966 0.91477 0.86024 0.90964 1.20583 0.99083 0.91402 1.13486 1.20492 0.93139 0.96561 0.96803 1.19110 0.93627 0.93168 1.11772 1.20927 0.98094 0.94923 0.88596 1.65335 1.39534 1.04520 1.12837 1.22925 0.90387 0.94617 0.96119 0.88095 1.22972 0.98311 0.96191 1.02069 1.22963 0.98013 0.96624 1.01992 1.23393 0.91549 0.97821 0.91484 0.86086 1.22763 1.03627 0.95601 0.97614 1.24957 0.76979 0.91149 0.82335 1.90396 1.29498 1.83660 1.30706 1.22507 1.04508 0.97820 0.94558 1.20668 0.98414 0.91732 0.98101 1.20855 0.92728 0.98665 1.08740 0.94580 0.91439 0.92623 0.95204 0.94647 0.92681 0.86882 0.87201 0.90502 0.94261 0.90990 0.91077 0.90963 0.90729 0.89206 0.87435 0.89384 0.87570 0.87429 0.85091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.66 10.19 59.84 0.61 2.27 16 2 N -0.61 -12.68 2.99 -181.01 -0.54 -13.22 16 3 C 0.25 6.06 4.91 -5.20 -0.03 6.03 16 4 C -0.53 -14.15 9.39 -34.44 -0.32 -14.47 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 7 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 8 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.24 4.66 6.55 -83.79 -0.55 4.11 16 13 C -0.22 -3.63 9.21 -39.38 -0.36 -4.00 16 14 C -0.05 -0.73 9.69 -39.61 -0.38 -1.11 16 15 C -0.17 -2.40 4.61 -104.59 -0.48 -2.88 16 16 C 0.10 1.11 5.08 -4.98 -0.03 1.08 16 17 N -0.50 -5.26 5.00 -213.65 -1.07 -6.33 16 18 C 0.07 0.59 3.58 -65.53 -0.23 0.36 16 19 H 0.10 0.72 8.07 -51.93 -0.42 0.30 16 20 C -0.16 -1.40 5.43 -25.33 -0.14 -1.53 16 21 C -0.16 -1.64 5.60 -25.33 -0.14 -1.78 16 22 C 0.07 0.76 3.25 -64.81 -0.21 0.55 16 23 H 0.12 1.64 5.11 -51.93 -0.27 1.38 16 24 C -0.16 -1.79 5.84 -26.29 -0.15 -1.95 16 25 C 0.37 4.27 5.55 -28.22 -0.16 4.12 16 26 O -0.47 -6.92 17.90 5.99 0.11 -6.81 16 27 C -0.16 -1.37 5.78 -27.01 -0.16 -1.53 16 28 C -0.07 -1.08 7.51 -39.61 -0.30 -1.38 16 29 C -0.19 -3.55 9.21 -39.38 -0.36 -3.91 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.17 8.07 -51.92 -0.42 0.75 16 32 H 0.06 0.83 6.20 -51.93 -0.32 0.51 16 33 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 34 H 0.04 0.91 6.20 -51.93 -0.32 0.59 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.11 1.68 6.14 -52.49 -0.32 1.36 16 37 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 39 H 0.04 0.41 7.08 -51.93 -0.37 0.05 16 40 H 0.07 0.58 8.06 -51.93 -0.42 0.17 16 41 H 0.07 0.64 7.74 -51.92 -0.40 0.24 16 42 H 0.07 0.79 7.77 -51.93 -0.40 0.38 16 43 H 0.07 0.77 7.67 -51.93 -0.40 0.38 16 44 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.11 1.49 7.53 -52.49 -0.40 1.10 16 49 H 0.13 2.78 6.14 -52.48 -0.32 2.46 16 LS Contribution 379.68 15.07 5.72 5.72 Total: -1.00 -29.26 379.68 -11.25 -40.51 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.70 Total: 3.07 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -3.49 Total: -14.44 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: -0.87 Total: -44.01 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: 0.11 Total: -6.81 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.26 -11.25 -40.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231816632.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.625 kcal (2) G-P(sol) polarization free energy of solvation -29.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds