Wall clock time and date at job start Tue Mar 31 2020 15:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46499 * 120.00414 * 2 1 4 4 C 1.50697 * 109.47084 * 269.99894 * 3 2 1 5 5 H 1.07996 * 120.00346 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99938 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99948 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00071 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47128 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47263 * 119.99286 * 8 6 4 11 11 H 1.48500 * 109.47032 * 239.99677 * 8 6 4 12 12 C 1.39681 * 119.99864 * 180.02562 * 2 1 3 13 13 C 1.38913 * 120.07057 * 359.97438 * 12 2 1 14 14 C 1.38106 * 119.92415 * 180.02562 * 13 12 2 15 15 C 1.38285 * 120.07208 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.92419 * 179.97438 * 15 14 13 17 17 N 1.46899 * 109.47107 * 89.99664 * 16 15 14 18 18 C 1.48613 * 111.00141 * 169.99752 * 17 16 15 19 19 H 1.09007 * 112.06643 * 41.74004 * 18 17 16 20 20 C 1.54457 * 104.51975 * 280.17296 * 18 17 16 21 21 C 1.54216 * 105.06131 * 336.01240 * 20 18 17 22 22 C 1.48619 * 110.99872 * 54.63438 * 17 16 15 23 23 H 1.08997 * 112.06908 * 317.70151 * 22 17 16 24 24 C 1.55234 * 106.70368 * 194.65816 * 22 17 16 25 25 C 1.51523 * 107.72800 * 301.58983 * 24 22 17 26 26 O 1.20766 * 121.00300 * 225.77061 * 25 24 22 27 27 C 1.51524 * 117.99674 * 45.74310 * 25 24 22 28 28 C 1.38286 * 120.15383 * 0.26802 * 15 14 13 29 29 C 1.38108 * 120.06868 * 359.45265 * 28 15 14 30 30 H 1.08998 * 109.47210 * 270.00296 * 1 2 3 31 31 H 1.09010 * 109.46805 * 29.99688 * 1 2 3 32 32 H 1.08996 * 109.47705 * 149.99880 * 1 2 3 33 33 H 1.08996 * 109.47221 * 29.99782 * 3 2 1 34 34 H 1.09003 * 109.46933 * 149.99871 * 3 2 1 35 35 H 0.96998 * 119.99847 * 180.02562 * 7 6 4 36 36 H 1.07997 * 120.03863 * 0.02562 * 13 12 2 37 37 H 1.07999 * 119.96140 * 179.97438 * 14 13 12 38 38 H 1.09002 * 109.47152 * 329.99751 * 16 15 14 39 39 H 1.09001 * 109.46980 * 209.99852 * 16 15 14 40 40 H 1.08999 * 110.32794 * 94.91452 * 20 18 17 41 41 H 1.09008 * 110.32283 * 217.11697 * 20 18 17 42 42 H 1.09005 * 110.32094 * 241.10823 * 21 20 18 43 43 H 1.08999 * 110.32240 * 118.90707 * 21 20 18 44 44 H 1.09003 * 109.64314 * 182.13655 * 24 22 17 45 45 H 1.08997 * 109.99736 * 61.24025 * 24 22 17 46 46 H 1.08996 * 109.80057 * 194.90020 * 27 25 24 47 47 H 1.08997 * 109.84403 * 74.06087 * 27 25 24 48 48 H 1.07999 * 119.96544 * 179.70952 * 28 15 14 49 49 H 1.08005 * 120.03586 * 180.27157 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1271 2.8773 -1.6727 7 7 3.5544 3.6174 -0.6731 8 14 3.4379 3.4169 -3.4339 9 1 2.8598 2.4169 -4.3673 10 1 2.8008 4.7380 -3.6666 11 1 4.9004 3.5244 -3.6678 12 6 2.1633 -1.2097 -0.0005 13 6 1.4702 -2.4136 -0.0005 14 6 2.1637 -3.6078 -0.0005 15 6 3.5466 -3.6061 0.0000 16 6 4.3000 -4.9112 0.0006 17 7 4.5453 -5.3357 -1.3842 18 6 5.4868 -6.4846 -1.4303 19 1 5.2762 -7.2181 -0.6520 20 6 6.8839 -5.8473 -1.2639 21 6 6.7188 -4.3897 -1.7399 22 6 5.2357 -4.2682 -2.1541 23 1 4.8235 -3.2810 -1.9454 24 6 5.1105 -4.6478 -3.6540 25 6 5.7418 -6.0128 -3.8387 26 8 6.4984 -6.2295 -4.7548 27 6 5.3958 -7.0977 -2.8390 28 6 4.2397 -2.4095 0.0061 29 6 3.5523 -1.2116 0.0003 30 1 -0.3633 0.0001 1.0276 31 1 -0.3633 0.8901 -0.5138 32 1 -0.3634 -0.8899 -0.5138 33 1 1.6085 2.0284 0.5138 34 1 3.1499 1.1382 0.5139 35 1 4.0313 4.4432 -0.8504 36 1 0.3902 -2.4156 -0.0005 37 1 1.6255 -4.5441 -0.0001 38 1 3.7107 -5.6707 0.5144 39 1 5.2523 -4.7808 0.5147 40 1 7.1890 -5.8717 -0.2178 41 1 7.6138 -6.3677 -1.8841 42 1 7.3675 -4.1946 -2.5939 43 1 6.9429 -3.6985 -0.9275 44 1 5.6362 -3.9124 -4.2632 45 1 4.0602 -4.6848 -3.9428 46 1 6.1030 -7.9221 -2.9293 47 1 4.3833 -7.4583 -3.0200 48 1 5.3197 -2.4117 0.0113 49 1 4.0942 -0.2774 0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231816632.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:11 Heat of formation + Delta-G solvation = -10.732790 kcal Electronic energy + Delta-G solvation = -28503.808470 eV Core-core repulsion = 24815.915863 eV Total energy + Delta-G solvation = -3687.892607 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.04864 -40.38070 -39.25860 -37.26806 -34.84357 -33.44239 -32.64895 -31.84014 -31.36063 -30.37174 -29.55602 -27.15030 -25.77562 -25.64604 -23.95949 -22.94948 -22.27442 -21.59092 -20.85316 -19.36418 -18.63754 -18.06317 -17.69381 -17.00360 -16.77868 -16.36109 -16.18706 -15.74819 -15.46523 -15.31215 -15.22623 -15.11614 -14.68078 -14.57660 -14.31585 -14.24893 -14.04031 -13.70811 -13.29103 -13.21299 -13.16606 -13.00553 -12.84187 -12.75968 -12.64351 -12.54605 -12.24440 -12.18554 -12.07225 -11.87289 -11.71823 -11.63908 -11.42654 -11.35928 -10.65262 -10.49878 -10.31944 -9.60051 -9.43972 -8.36240 -7.77614 -6.37797 0.73443 0.87212 0.96774 1.34615 1.36938 1.48503 2.33448 2.65542 2.87392 3.05714 3.13569 3.29015 3.65569 3.71302 3.91959 3.93051 4.08799 4.09669 4.16986 4.28126 4.29235 4.38351 4.43508 4.52136 4.60491 4.63197 4.69925 4.75118 4.77002 4.83629 4.89658 4.94117 4.95732 5.00903 5.02587 5.05010 5.08156 5.14123 5.16913 5.22288 5.25921 5.37208 5.60648 5.68551 5.72190 5.87627 6.00613 6.07281 6.11335 6.26258 6.51210 6.51607 6.83712 6.96611 7.34369 8.82595 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012680 B = 0.003451 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.752050 B = 8112.816155 C = 9395.939144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.633 5.633 3 C 0.267 3.733 4 C -0.539 4.539 5 H 0.049 0.951 6 C 0.014 3.986 7 N -0.926 5.926 8 Si 0.958 3.042 9 H -0.271 1.271 10 H -0.275 1.275 11 H -0.278 1.278 12 C 0.213 3.787 13 C -0.219 4.219 14 C -0.046 4.046 15 C -0.156 4.156 16 C 0.104 3.896 17 N -0.500 5.500 18 C 0.075 3.925 19 H 0.132 0.868 20 C -0.153 4.153 21 C -0.159 4.159 22 C 0.067 3.933 23 H 0.097 0.903 24 C -0.161 4.161 25 C 0.372 3.628 26 O -0.506 6.506 27 C -0.149 4.149 28 C -0.066 4.066 29 C -0.217 4.217 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.008 0.992 34 H 0.011 0.989 35 H 0.267 0.733 36 H 0.131 0.869 37 H 0.145 0.855 38 H 0.103 0.897 39 H 0.047 0.953 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.111 0.889 46 H 0.102 0.898 47 H 0.123 0.877 48 H 0.118 0.882 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.982 -22.722 1.850 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.340 5.340 3 C 0.145 3.855 4 C -0.578 4.578 5 H 0.067 0.933 6 C -0.185 4.185 7 N -0.566 5.566 8 Si 0.783 3.217 9 H -0.195 1.195 10 H -0.200 1.200 11 H -0.204 1.204 12 C 0.108 3.892 13 C -0.241 4.241 14 C -0.065 4.065 15 C -0.159 4.159 16 C -0.023 4.023 17 N -0.222 5.222 18 C -0.034 4.034 19 H 0.150 0.850 20 C -0.192 4.192 21 C -0.198 4.198 22 C -0.042 4.042 23 H 0.115 0.885 24 C -0.199 4.199 25 C 0.252 3.748 26 O -0.383 6.383 27 C -0.187 4.187 28 C -0.085 4.085 29 C -0.240 4.240 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.026 0.974 34 H 0.029 0.971 35 H 0.076 0.924 36 H 0.148 0.852 37 H 0.163 0.837 38 H 0.121 0.879 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.129 0.871 46 H 0.120 0.880 47 H 0.141 0.859 48 H 0.136 0.864 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.792 -22.611 1.212 22.657 hybrid contribution 1.141 1.816 -0.573 2.220 sum 1.933 -20.795 0.640 20.894 Atomic orbital electron populations 1.21592 0.79485 1.02482 1.00919 1.46962 1.05590 1.03786 1.77706 1.18750 0.91033 0.80337 0.95329 1.21804 1.36168 1.06416 0.93369 0.93287 1.25739 0.95149 0.96363 1.01245 1.70038 1.39085 1.14826 1.32673 0.85504 0.78005 0.78231 0.79932 1.19504 1.19996 1.20376 1.18239 0.91625 0.86472 0.92876 1.20826 1.00045 0.90799 1.12462 1.20904 0.93388 0.97109 0.95079 1.19468 0.93900 0.93862 1.08682 1.20983 0.98503 0.93684 0.89112 1.65327 1.40074 1.04542 1.12300 1.23047 0.89324 0.94233 0.96764 0.85009 1.22973 0.98775 0.94607 1.02846 1.22953 0.97130 0.98168 1.01521 1.23235 0.92209 0.97127 0.91666 0.88521 1.22772 1.03711 0.95813 0.97586 1.25331 0.75687 0.91713 0.82113 1.90391 1.31231 1.84214 1.32507 1.22530 1.05783 0.96931 0.93453 1.20789 0.99013 0.91377 0.97359 1.20734 0.93194 0.98470 1.11594 0.92957 0.92707 0.90277 0.97427 0.97125 0.92429 0.85156 0.83687 0.87860 0.93434 0.89552 0.91138 0.92164 0.90967 0.90447 0.87061 0.87980 0.85878 0.86389 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.34 10.19 127.77 1.30 4.64 16 2 N -0.63 -27.14 2.99 -726.58 -2.17 -29.31 16 3 C 0.27 13.91 4.91 85.63 0.42 14.33 16 4 C -0.54 -30.08 9.39 25.60 0.24 -29.84 16 5 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 6 C 0.01 0.80 5.46 84.66 0.46 1.26 16 7 N -0.93 -54.18 13.29 21.45 0.28 -53.89 16 8 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 12 C 0.21 8.32 6.55 38.21 0.25 8.57 16 13 C -0.22 -6.74 9.21 22.40 0.21 -6.54 16 14 C -0.05 -1.16 9.69 22.25 0.22 -0.94 16 15 C -0.16 -3.90 4.61 -19.84 -0.09 -4.00 16 16 C 0.10 1.82 5.08 85.56 0.43 2.25 16 17 N -0.50 -8.65 5.00 -829.86 -4.15 -12.80 16 18 C 0.07 0.95 3.58 45.38 0.16 1.12 16 19 H 0.13 1.02 8.07 -2.38 -0.02 1.00 16 20 C -0.15 -2.25 5.43 31.50 0.17 -2.08 16 21 C -0.16 -3.12 5.60 31.50 0.18 -2.94 16 22 C 0.07 1.44 3.25 45.85 0.15 1.59 16 23 H 0.10 2.59 5.11 -2.39 -0.01 2.58 16 24 C -0.16 -3.54 5.84 30.88 0.18 -3.36 16 25 C 0.37 8.04 5.55 29.63 0.16 8.21 16 26 O -0.51 -14.67 17.90 -1.47 -0.03 -14.69 16 27 C -0.15 -2.07 5.78 30.42 0.18 -1.90 16 28 C -0.07 -2.04 7.51 22.25 0.17 -1.88 16 29 C -0.22 -8.65 9.21 22.40 0.21 -8.45 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 31 H 0.05 1.96 8.07 -2.38 -0.02 1.94 16 32 H 0.08 2.26 6.20 -2.39 -0.01 2.25 16 33 H 0.01 0.42 8.07 -2.39 -0.02 0.41 16 34 H 0.01 0.61 6.20 -2.39 -0.01 0.59 16 35 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 36 H 0.13 3.51 6.14 -2.91 -0.02 3.49 16 37 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 38 H 0.10 1.38 8.08 -2.39 -0.02 1.37 16 39 H 0.05 0.80 7.08 -2.39 -0.02 0.78 16 40 H 0.09 1.06 8.06 -2.39 -0.02 1.04 16 41 H 0.07 1.08 7.74 -2.38 -0.02 1.06 16 42 H 0.06 1.31 7.77 -2.38 -0.02 1.30 16 43 H 0.07 1.44 7.67 -2.39 -0.02 1.42 16 44 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.12 3.29 7.53 -2.91 -0.02 3.27 16 49 H 0.09 4.31 6.14 -2.91 -0.02 4.29 16 Total: -1.00 -66.90 379.68 1.90 -65.01 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.94 Total: 19.52 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 4.99 Total: -19.96 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -6.03 Total: -96.00 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.03 Total: -14.69 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -66.90 1.90 -65.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231816632.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.272 kcal (2) G-P(sol) polarization free energy of solvation -66.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds