Wall clock time and date at job start Tue Mar 31 2020 15:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36940 * 119.99761 * 2 1 4 4 H 1.07999 * 119.99934 * 329.07514 * 3 2 1 5 5 C 1.38808 * 119.99894 * 149.08242 * 3 2 1 6 6 N 1.31620 * 119.99705 * 155.83949 * 5 3 2 7 7 Si 1.86800 * 119.99959 * 335.83487 * 5 3 2 8 8 H 1.48507 * 109.46982 * 95.29129 * 7 5 3 9 9 H 1.48495 * 109.47023 * 215.28706 * 7 5 3 10 10 H 1.48491 * 109.47275 * 335.29225 * 7 5 3 11 11 C 1.46493 * 120.00005 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47152 * 89.99755 * 11 2 1 13 13 H 1.08998 * 110.89049 * 308.88274 * 12 11 2 14 14 C 1.55160 * 111.00425 * 184.99739 * 12 11 2 15 15 C 1.54325 * 102.94096 * 206.42518 * 14 12 11 16 16 N 1.47017 * 107.27117 * 22.19333 * 15 14 12 17 17 C 1.34780 * 125.64805 * 181.10300 * 16 15 14 18 18 O 1.21553 * 119.99965 * 184.25069 * 17 16 15 19 19 C 1.47846 * 119.99943 * 4.24761 * 17 16 15 20 20 C 1.39577 * 120.14542 * 315.98504 * 19 17 16 21 21 C 1.37955 * 119.85137 * 179.78786 * 20 19 17 22 22 C 1.38366 * 120.14682 * 0.48674 * 21 20 19 23 23 C 1.50693 * 119.85629 * 179.71841 * 22 21 20 24 24 C 1.53006 * 117.49874 * 8.64943 * 23 22 21 25 25 C 1.53002 * 117.50153 * 300.02454 * 23 22 21 26 26 C 1.38359 * 120.28931 * 359.74525 * 22 21 20 27 27 C 1.37955 * 120.14700 * 0.02562 * 26 22 21 28 28 C 1.47426 * 108.70611 * 1.05988 * 16 15 14 29 29 H 1.09004 * 109.46955 * 265.12881 * 1 2 3 30 30 H 1.08994 * 109.47562 * 25.12823 * 1 2 3 31 31 H 1.08995 * 109.47324 * 145.13318 * 1 2 3 32 32 H 0.97005 * 119.99663 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.47523 * 209.99813 * 11 2 1 34 34 H 1.09005 * 109.47450 * 330.00066 * 11 2 1 35 35 H 1.08999 * 110.72298 * 324.78929 * 14 12 11 36 36 H 1.08999 * 110.71910 * 88.06298 * 14 12 11 37 37 H 1.09000 * 109.88232 * 141.61268 * 15 14 12 38 38 H 1.09010 * 109.88277 * 262.77756 * 15 14 12 39 39 H 1.07998 * 120.07123 * 359.97438 * 20 19 17 40 40 H 1.08000 * 119.92845 * 180.22620 * 21 20 19 41 41 H 1.09000 * 115.55084 * 154.34591 * 23 22 21 42 42 H 1.09006 * 117.49523 * 359.97438 * 24 23 22 43 43 H 1.08995 * 117.50182 * 145.01715 * 24 23 22 44 44 H 1.08997 * 117.49928 * 214.97581 * 25 23 22 45 45 H 1.09001 * 117.49441 * 0.02562 * 25 23 22 46 46 H 1.08004 * 119.92790 * 180.02562 * 26 22 21 47 47 H 1.07998 * 120.07633 * 180.02562 * 27 26 22 48 48 H 1.09000 * 110.36747 * 217.03042 * 28 16 15 49 49 H 1.08997 * 110.36701 * 94.70727 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 1.7248 2.0548 -0.4807 5 6 3.3898 1.2714 0.6177 6 7 4.2493 2.1951 0.2430 7 14 3.8388 0.0754 1.9806 8 1 4.6040 -1.0618 1.4090 9 1 4.6702 0.7711 2.9955 10 1 2.5994 -0.4338 2.6205 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4418 13 1 1.5294 -1.6979 -2.0212 14 6 3.1161 -3.1129 -1.4845 15 6 3.8881 -3.0892 -2.8205 16 7 4.1112 -1.6789 -3.1708 17 6 4.7342 -1.2342 -4.2802 18 8 4.9314 -0.0443 -4.4307 19 6 5.1776 -2.1936 -5.3139 20 6 5.8157 -3.3784 -4.9431 21 6 6.2230 -4.2714 -5.9125 22 6 6.0094 -3.9901 -7.2503 23 6 6.4627 -4.9673 -8.3040 24 6 6.9649 -6.3333 -7.8316 25 6 7.9555 -5.2970 -8.3664 26 6 5.3818 -2.8153 -7.6248 27 6 4.9653 -1.9159 -6.6652 28 6 3.5398 -0.8317 -2.1082 29 1 -0.3633 -0.0873 1.0240 30 1 -0.3634 0.9303 -0.4364 31 1 -0.3634 -0.8431 -0.5875 32 1 5.1158 2.2551 0.6749 33 1 3.1500 -1.1382 0.5143 34 1 1.6084 -2.0282 0.5147 35 1 3.8004 -3.2413 -0.6459 36 1 2.3597 -3.8976 -1.4900 37 1 4.8449 -3.5984 -2.7048 38 1 3.2987 -3.5755 -3.5980 39 1 5.9874 -3.5968 -3.8995 40 1 6.7136 -5.1902 -5.6268 41 1 5.9157 -4.9302 -9.2461 42 1 6.9677 -6.5248 -6.7585 43 1 6.7482 -7.1950 -8.4628 44 1 8.3905 -5.4772 -9.3495 45 1 8.6096 -4.8074 -7.6449 46 1 5.2176 -2.6018 -8.6707 47 1 4.4752 -0.9994 -6.9588 48 1 3.0924 0.0648 -2.5373 49 1 4.3079 -0.5634 -1.3828 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691997708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:45 Heat of formation + Delta-G solvation = 55.498289 kcal Electronic energy + Delta-G solvation = -28063.554417 eV Core-core repulsion = 24378.533805 eV Total energy + Delta-G solvation = -3685.020612 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.38090 -39.21060 -37.60205 -36.62181 -35.52832 -32.20692 -31.49534 -31.02168 -30.59996 -28.92206 -26.44472 -25.90048 -24.47553 -23.32009 -22.76608 -22.37150 -21.10378 -20.76554 -20.02368 -19.43530 -17.35093 -16.93685 -16.74274 -15.80262 -15.56680 -15.44160 -15.30542 -14.64146 -14.54700 -14.01278 -13.89885 -13.62465 -13.47980 -13.21780 -13.04058 -12.95645 -12.65999 -12.45581 -12.23946 -11.98028 -11.88416 -11.77754 -11.63118 -11.50895 -11.24383 -11.07128 -10.97061 -10.84711 -10.69900 -10.56362 -10.32217 -10.21570 -9.73441 -9.59540 -9.39777 -9.12225 -8.72803 -8.50247 -8.22038 -6.92233 -5.94876 -3.30332 0.84725 1.23270 2.88635 3.24947 3.26509 3.46181 3.46992 3.49529 3.81170 4.20137 4.47955 4.51293 4.56602 4.59019 4.67501 4.74158 4.83989 4.90842 4.98222 5.16013 5.17391 5.25226 5.31284 5.37400 5.43465 5.44766 5.57553 5.66156 5.69906 5.73237 5.75007 5.86602 5.92747 5.96762 6.14659 6.17600 6.20116 6.26766 6.28410 6.36446 6.37947 6.48188 6.61390 6.69037 6.71596 6.75125 6.87366 6.95746 7.86948 8.01947 8.36752 8.46225 8.98374 9.73803 10.10742 11.20211 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.020879 B = 0.002798 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.714666 B =10003.946902 C =10162.939061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.613 5.613 3 C -0.267 4.267 4 H 0.082 0.918 5 C 0.034 3.966 6 N -0.892 5.892 7 Si 0.872 3.128 8 H -0.286 1.286 9 H -0.303 1.303 10 H -0.272 1.272 11 C 0.147 3.853 12 C -0.112 4.112 13 H 0.077 0.923 14 C -0.133 4.133 15 C 0.100 3.900 16 N -0.614 5.614 17 C 0.565 3.435 18 O -0.527 6.527 19 C -0.118 4.118 20 C -0.089 4.089 21 C -0.127 4.127 22 C -0.039 4.039 23 C -0.120 4.120 24 C -0.177 4.177 25 C -0.169 4.169 26 C -0.119 4.119 27 C -0.066 4.066 28 C 0.130 3.870 29 H 0.006 0.994 30 H 0.045 0.955 31 H 0.026 0.974 32 H 0.263 0.737 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.127 0.873 47 H 0.132 0.868 48 H 0.088 0.912 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.670 -19.731 -14.566 24.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.336 5.336 3 C -0.395 4.395 4 H 0.100 0.900 5 C -0.167 4.167 6 N -0.533 5.533 7 Si 0.703 3.297 8 H -0.215 1.215 9 H -0.232 1.232 10 H -0.197 1.197 11 C 0.021 3.979 12 C -0.134 4.134 13 H 0.096 0.904 14 C -0.172 4.172 15 C -0.023 4.023 16 N -0.347 5.347 17 C 0.352 3.648 18 O -0.404 6.404 19 C -0.121 4.121 20 C -0.107 4.107 21 C -0.145 4.145 22 C -0.040 4.040 23 C -0.138 4.138 24 C -0.213 4.213 25 C -0.206 4.206 26 C -0.137 4.137 27 C -0.084 4.084 28 C 0.010 3.990 29 H 0.024 0.976 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.132 0.868 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.145 0.855 47 H 0.150 0.850 48 H 0.107 0.893 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.934 -18.919 -14.664 24.116 hybrid contribution 0.427 -0.686 0.846 1.169 sum 3.361 -19.605 -13.819 24.220 Atomic orbital electron populations 1.21044 0.84342 0.99170 0.97369 1.44100 1.00888 1.01995 1.86644 1.18807 1.01048 0.89185 1.30496 0.90009 1.25284 0.96622 0.96639 0.98132 1.69899 1.06479 1.35987 1.40906 0.87077 0.77862 0.80486 0.84274 1.21488 1.23156 1.19749 1.21132 0.96572 0.87908 0.92324 1.23048 0.97629 0.92452 1.00302 0.90428 1.22741 0.99526 0.98690 0.96220 1.22160 0.99559 0.83168 0.97407 1.48650 1.56666 1.08126 1.21285 1.17959 0.78192 0.87849 0.80760 1.90844 1.55248 1.16411 1.77851 1.20008 1.02463 0.95496 0.94143 1.21444 0.96832 0.92382 1.00065 1.20940 1.01589 0.99824 0.92134 1.19267 0.97169 0.94351 0.93164 1.21068 0.97535 0.96076 0.99131 1.23082 1.03852 0.92405 1.02008 1.23043 0.91500 1.02936 1.03087 1.20872 0.99595 0.93671 0.99521 1.21178 0.97306 0.98910 0.91052 1.22281 0.95170 0.93657 0.87931 0.97564 0.93574 0.95487 0.92730 0.92735 0.93606 0.90720 0.90313 0.91734 0.91635 0.85061 0.85574 0.86815 0.88227 0.88385 0.88387 0.88445 0.85469 0.85019 0.89336 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.46 10.70 59.85 0.64 3.10 16 2 N -0.61 -14.25 2.58 -181.12 -0.47 -14.72 16 3 C -0.27 -7.34 9.27 -15.06 -0.14 -7.48 16 4 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 5 C 0.03 0.96 5.16 -17.43 -0.09 0.87 16 6 N -0.89 -27.25 13.97 55.49 0.78 -26.48 16 7 Si 0.87 21.96 24.88 -169.99 -4.23 17.73 16 8 H -0.29 -6.87 6.66 56.52 0.38 -6.49 16 9 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 10 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 11 C 0.15 3.03 4.09 -4.04 -0.02 3.01 16 12 C -0.11 -2.02 3.26 -88.47 -0.29 -2.31 16 13 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 14 C -0.13 -1.84 6.42 -24.89 -0.16 -2.00 16 15 C 0.10 1.35 5.56 -3.07 -0.02 1.33 16 16 N -0.61 -11.04 3.33 -171.63 -0.57 -11.61 16 17 C 0.56 10.70 7.44 -12.33 -0.09 10.61 16 18 O -0.53 -12.38 17.26 5.32 0.09 -12.29 16 19 C -0.12 -1.74 5.48 -104.97 -0.58 -2.32 16 20 C -0.09 -1.07 8.53 -39.19 -0.33 -1.40 16 21 C -0.13 -1.28 9.28 -39.64 -0.37 -1.64 16 22 C -0.04 -0.39 5.62 -104.53 -0.59 -0.97 16 23 C -0.12 -0.90 6.04 -91.77 -0.55 -1.46 16 24 C -0.18 -1.10 9.86 -26.72 -0.26 -1.37 16 25 C -0.17 -1.12 10.16 -26.73 -0.27 -1.39 16 26 C -0.12 -1.25 9.72 -39.64 -0.39 -1.64 16 27 C -0.07 -0.86 9.68 -39.18 -0.38 -1.24 16 28 C 0.13 2.76 5.67 -2.53 -0.01 2.75 16 29 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.05 0.89 8.00 -51.93 -0.42 0.48 16 31 H 0.03 0.45 8.11 -51.93 -0.42 0.03 16 32 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.06 1.25 2.34 -51.93 -0.12 1.13 16 34 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 35 H 0.07 1.04 8.04 -51.93 -0.42 0.62 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.75 5.82 -51.93 -0.30 0.44 16 38 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 39 H 0.13 1.45 5.60 -52.49 -0.29 1.16 16 40 H 0.13 0.99 6.00 -52.49 -0.31 0.67 16 41 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.10 0.60 6.16 -51.93 -0.32 0.28 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 47 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 48 H 0.09 2.19 8.08 -51.93 -0.42 1.77 16 49 H 0.07 1.80 7.75 -51.93 -0.40 1.40 16 LS Contribution 386.42 15.07 5.82 5.82 Total: -1.00 -33.33 386.42 -10.13 -43.46 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.66 Total: 1.64 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -3.89 Total: -3.55 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.26 Total: -52.81 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.29 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.23 Total: 17.73 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.33 -10.13 -43.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691997708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.956 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds