Wall clock time and date at job start Tue Mar 31 2020 15:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36940 * 119.99761 * 2 1 4 4 H 1.07999 * 119.99934 * 329.07514 * 3 2 1 5 5 C 1.38808 * 119.99894 * 149.08242 * 3 2 1 6 6 N 1.31620 * 119.99705 * 155.83949 * 5 3 2 7 7 Si 1.86800 * 119.99959 * 335.83487 * 5 3 2 8 8 H 1.48507 * 109.46982 * 95.29129 * 7 5 3 9 9 H 1.48495 * 109.47023 * 215.28706 * 7 5 3 10 10 H 1.48491 * 109.47275 * 335.29225 * 7 5 3 11 11 C 1.46493 * 120.00005 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47152 * 89.99755 * 11 2 1 13 13 H 1.08998 * 110.89049 * 308.88274 * 12 11 2 14 14 C 1.55160 * 111.00425 * 184.99739 * 12 11 2 15 15 C 1.54325 * 102.94096 * 206.42518 * 14 12 11 16 16 N 1.47017 * 107.27117 * 22.19333 * 15 14 12 17 17 C 1.34780 * 125.64805 * 181.10300 * 16 15 14 18 18 O 1.21553 * 119.99965 * 184.25069 * 17 16 15 19 19 C 1.47846 * 119.99943 * 4.24761 * 17 16 15 20 20 C 1.39577 * 120.14542 * 315.98504 * 19 17 16 21 21 C 1.37955 * 119.85137 * 179.78786 * 20 19 17 22 22 C 1.38366 * 120.14682 * 0.48674 * 21 20 19 23 23 C 1.50693 * 119.85629 * 179.71841 * 22 21 20 24 24 C 1.53006 * 117.49874 * 8.64943 * 23 22 21 25 25 C 1.53002 * 117.50153 * 300.02454 * 23 22 21 26 26 C 1.38359 * 120.28931 * 359.74525 * 22 21 20 27 27 C 1.37955 * 120.14700 * 0.02562 * 26 22 21 28 28 C 1.47426 * 108.70611 * 1.05988 * 16 15 14 29 29 H 1.09004 * 109.46955 * 265.12881 * 1 2 3 30 30 H 1.08994 * 109.47562 * 25.12823 * 1 2 3 31 31 H 1.08995 * 109.47324 * 145.13318 * 1 2 3 32 32 H 0.97005 * 119.99663 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.47523 * 209.99813 * 11 2 1 34 34 H 1.09005 * 109.47450 * 330.00066 * 11 2 1 35 35 H 1.08999 * 110.72298 * 324.78929 * 14 12 11 36 36 H 1.08999 * 110.71910 * 88.06298 * 14 12 11 37 37 H 1.09000 * 109.88232 * 141.61268 * 15 14 12 38 38 H 1.09010 * 109.88277 * 262.77756 * 15 14 12 39 39 H 1.07998 * 120.07123 * 359.97438 * 20 19 17 40 40 H 1.08000 * 119.92845 * 180.22620 * 21 20 19 41 41 H 1.09000 * 115.55084 * 154.34591 * 23 22 21 42 42 H 1.09006 * 117.49523 * 359.97438 * 24 23 22 43 43 H 1.08995 * 117.50182 * 145.01715 * 24 23 22 44 44 H 1.08997 * 117.49928 * 214.97581 * 25 23 22 45 45 H 1.09001 * 117.49441 * 0.02562 * 25 23 22 46 46 H 1.08004 * 119.92790 * 180.02562 * 26 22 21 47 47 H 1.07998 * 120.07633 * 180.02562 * 27 26 22 48 48 H 1.09000 * 110.36747 * 217.03042 * 28 16 15 49 49 H 1.08997 * 110.36701 * 94.70727 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 1.7248 2.0548 -0.4807 5 6 3.3898 1.2714 0.6177 6 7 4.2493 2.1951 0.2430 7 14 3.8388 0.0754 1.9806 8 1 4.6040 -1.0618 1.4090 9 1 4.6702 0.7711 2.9955 10 1 2.5994 -0.4338 2.6205 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4418 13 1 1.5294 -1.6979 -2.0212 14 6 3.1161 -3.1129 -1.4845 15 6 3.8881 -3.0892 -2.8205 16 7 4.1112 -1.6789 -3.1708 17 6 4.7342 -1.2342 -4.2802 18 8 4.9314 -0.0443 -4.4307 19 6 5.1776 -2.1936 -5.3139 20 6 5.8157 -3.3784 -4.9431 21 6 6.2230 -4.2714 -5.9125 22 6 6.0094 -3.9901 -7.2503 23 6 6.4627 -4.9673 -8.3040 24 6 6.9649 -6.3333 -7.8316 25 6 7.9555 -5.2970 -8.3664 26 6 5.3818 -2.8153 -7.6248 27 6 4.9653 -1.9159 -6.6652 28 6 3.5398 -0.8317 -2.1082 29 1 -0.3633 -0.0873 1.0240 30 1 -0.3634 0.9303 -0.4364 31 1 -0.3634 -0.8431 -0.5875 32 1 5.1158 2.2551 0.6749 33 1 3.1500 -1.1382 0.5143 34 1 1.6084 -2.0282 0.5147 35 1 3.8004 -3.2413 -0.6459 36 1 2.3597 -3.8976 -1.4900 37 1 4.8449 -3.5984 -2.7048 38 1 3.2987 -3.5755 -3.5980 39 1 5.9874 -3.5968 -3.8995 40 1 6.7136 -5.1902 -5.6268 41 1 5.9157 -4.9302 -9.2461 42 1 6.9677 -6.5248 -6.7585 43 1 6.7482 -7.1950 -8.4628 44 1 8.3905 -5.4772 -9.3495 45 1 8.6096 -4.8074 -7.6449 46 1 5.2176 -2.6018 -8.6707 47 1 4.4752 -0.9994 -6.9588 48 1 3.0924 0.0648 -2.5373 49 1 4.3079 -0.5634 -1.3828 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691997708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:44 Heat of formation + Delta-G solvation = 35.398248 kcal Electronic energy + Delta-G solvation = -28064.426021 eV Core-core repulsion = 24378.533805 eV Total energy + Delta-G solvation = -3685.892215 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.58492 -40.25015 -39.03635 -37.43762 -37.25361 -33.93687 -33.21346 -32.01516 -31.62733 -30.27468 -28.11513 -27.63072 -25.66015 -24.26677 -23.74311 -23.05170 -22.82956 -21.68442 -21.40326 -20.67366 -18.84351 -18.58778 -17.69514 -17.33923 -17.04247 -16.82635 -16.27540 -15.80002 -15.62896 -15.55018 -15.12913 -14.90389 -14.78359 -14.50132 -14.41795 -14.30753 -14.04946 -13.80227 -13.62885 -13.47588 -13.33127 -13.08020 -12.67465 -12.62942 -12.52569 -12.30328 -12.17111 -12.05943 -11.99105 -11.73636 -11.62047 -11.58032 -11.24581 -11.23304 -11.05750 -10.60003 -10.00698 -9.79468 -9.52503 -8.86800 -8.16607 -5.48183 -0.12396 0.35496 1.24566 1.39133 1.49594 1.57713 1.91999 2.40747 2.59806 3.02446 3.14197 3.32064 3.45056 3.62026 3.67730 3.74737 3.82467 3.91751 4.01301 4.03219 4.16749 4.25489 4.30626 4.37816 4.42522 4.52701 4.58575 4.62863 4.70315 4.73634 4.75358 4.80236 4.85225 4.92498 4.96186 5.02120 5.05624 5.08091 5.12990 5.15158 5.18366 5.24606 5.29625 5.32887 5.38776 5.43709 5.56721 5.87283 5.90572 6.14073 6.46339 6.97418 7.00264 7.66346 8.02712 9.03206 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.020879 B = 0.002798 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.714666 B =10003.946902 C =10162.939061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.628 5.628 3 C -0.251 4.251 4 H 0.035 0.965 5 C -0.025 4.025 6 N -0.949 5.949 7 Si 0.942 3.058 8 H -0.268 1.268 9 H -0.317 1.317 10 H -0.254 1.254 11 C 0.141 3.859 12 C -0.104 4.104 13 H 0.086 0.914 14 C -0.120 4.120 15 C 0.095 3.905 16 N -0.614 5.614 17 C 0.557 3.443 18 O -0.595 6.595 19 C -0.143 4.143 20 C -0.085 4.085 21 C -0.121 4.121 22 C -0.030 4.030 23 C -0.134 4.134 24 C -0.167 4.167 25 C -0.169 4.169 26 C -0.117 4.117 27 C -0.081 4.081 28 C 0.139 3.861 29 H 0.020 0.980 30 H 0.033 0.967 31 H 0.063 0.937 32 H 0.258 0.742 33 H 0.032 0.968 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.124 0.876 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.142 0.858 40 H 0.157 0.843 41 H 0.126 0.874 42 H 0.105 0.895 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.090 0.910 46 H 0.150 0.850 47 H 0.116 0.884 48 H 0.032 0.968 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.397 -25.925 -15.123 30.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.352 5.352 3 C -0.381 4.381 4 H 0.053 0.947 5 C -0.220 4.220 6 N -0.594 5.594 7 Si 0.771 3.229 8 H -0.195 1.195 9 H -0.246 1.246 10 H -0.178 1.178 11 C 0.015 3.985 12 C -0.126 4.126 13 H 0.104 0.896 14 C -0.158 4.158 15 C -0.026 4.026 16 N -0.346 5.346 17 C 0.347 3.653 18 O -0.476 6.476 19 C -0.146 4.146 20 C -0.103 4.103 21 C -0.138 4.138 22 C -0.030 4.030 23 C -0.152 4.152 24 C -0.203 4.203 25 C -0.206 4.206 26 C -0.135 4.135 27 C -0.100 4.100 28 C 0.016 3.984 29 H 0.038 0.962 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.142 0.858 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.160 0.840 40 H 0.174 0.826 41 H 0.144 0.856 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.109 0.891 46 H 0.168 0.832 47 H 0.134 0.866 48 H 0.051 0.949 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.611 -25.211 -15.216 29.562 hybrid contribution 0.474 1.250 0.846 1.582 sum 3.084 -23.961 -14.370 28.109 Atomic orbital electron populations 1.21167 0.81951 1.00224 0.98680 1.44260 1.02535 1.01528 1.86913 1.18608 1.00960 0.89883 1.28677 0.94683 1.25891 0.96621 0.99076 1.00457 1.70069 1.07086 1.39486 1.42729 0.85934 0.78113 0.78559 0.80280 1.19487 1.24614 1.17835 1.21305 0.95838 0.87417 0.93907 1.22894 0.96896 0.94492 0.98274 0.89580 1.22794 1.00251 0.96526 0.96249 1.22530 1.01573 0.80317 0.98199 1.48749 1.55742 1.09892 1.20235 1.18813 0.77140 0.87841 0.81490 1.90791 1.58023 1.19539 1.79278 1.19726 1.05512 0.96154 0.93189 1.21526 0.96191 0.91394 1.01205 1.21247 1.00684 1.00201 0.91709 1.19622 0.95278 0.94097 0.93986 1.21137 0.98443 0.96544 0.99034 1.23204 1.02412 0.92079 1.02634 1.23111 0.90761 1.02930 1.03765 1.21097 0.99000 0.93346 1.00013 1.21198 0.98252 0.99294 0.91239 1.21866 0.95067 0.93503 0.87935 0.96189 0.94766 0.91852 0.93282 0.94978 0.89482 0.90331 0.85806 0.89097 0.89053 0.84025 0.82603 0.85599 0.87716 0.86903 0.87117 0.89140 0.83186 0.86555 0.94931 0.94924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.64 10.70 127.77 1.37 6.01 16 2 N -0.63 -29.12 2.58 -726.94 -1.88 -31.00 16 3 C -0.25 -14.56 9.27 84.03 0.78 -13.78 16 4 H 0.04 2.30 8.06 -2.91 -0.02 2.28 16 5 C -0.02 -1.48 5.16 84.86 0.44 -1.04 16 6 N -0.95 -62.28 13.97 21.65 0.30 -61.98 16 7 Si 0.94 46.53 24.88 68.60 1.71 48.23 16 8 H -0.27 -12.25 6.66 99.48 0.66 -11.59 16 9 H -0.32 -16.19 7.11 99.48 0.71 -15.48 16 10 H -0.25 -11.69 7.11 99.48 0.71 -10.99 16 11 C 0.14 5.49 4.09 86.38 0.35 5.84 16 12 C -0.10 -3.58 3.26 -9.40 -0.03 -3.61 16 13 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 14 C -0.12 -2.79 6.42 31.78 0.20 -2.59 16 15 C 0.09 2.27 5.56 86.73 0.48 2.75 16 16 N -0.61 -22.65 3.33 -815.18 -2.71 -25.36 16 17 C 0.56 22.43 7.44 86.79 0.65 23.08 16 18 O -0.59 -30.89 17.26 -3.88 -0.07 -30.96 16 19 C -0.14 -4.26 5.48 -20.09 -0.11 -4.37 16 20 C -0.08 -1.86 8.53 22.53 0.19 -1.67 16 21 C -0.12 -2.00 9.28 22.23 0.21 -1.80 16 22 C -0.03 -0.49 5.62 -19.81 -0.11 -0.60 16 23 C -0.13 -1.49 6.04 -11.54 -0.07 -1.56 16 24 C -0.17 -1.33 9.86 30.60 0.30 -1.03 16 25 C -0.17 -1.61 10.16 30.60 0.31 -1.30 16 26 C -0.12 -2.28 9.72 22.23 0.22 -2.07 16 27 C -0.08 -2.18 9.68 22.53 0.22 -1.96 16 28 C 0.14 6.23 5.67 86.86 0.49 6.72 16 29 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.03 1.33 8.00 -2.39 -0.02 1.31 16 31 H 0.06 1.91 8.11 -2.39 -0.02 1.89 16 32 H 0.26 16.24 8.31 -92.70 -0.77 15.47 16 33 H 0.03 1.42 2.34 -2.39 -0.01 1.42 16 34 H 0.09 2.73 8.07 -2.38 -0.02 2.71 16 35 H 0.08 1.82 8.04 -2.39 -0.02 1.80 16 36 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.09 1.74 5.82 -2.39 -0.01 1.73 16 38 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.14 2.72 5.60 -2.91 -0.02 2.70 16 40 H 0.16 1.66 6.00 -2.91 -0.02 1.65 16 41 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.10 0.74 6.16 -2.38 -0.01 0.72 16 43 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 47 H 0.12 3.36 8.06 -2.91 -0.02 3.34 16 48 H 0.03 1.77 8.08 -2.39 -0.02 1.75 16 49 H 0.03 1.71 7.75 -2.39 -0.02 1.69 16 Total: -1.00 -83.03 386.42 4.14 -78.90 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.90 Total: 15.12 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 5.89 Total: 7.04 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -4.29 Total: -118.33 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.07 Total: -30.96 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.71 Total: 48.23 kcal Total: -83.03 4.14 -78.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691997708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.295 kcal (2) G-P(sol) polarization free energy of solvation -83.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds