Wall clock time and date at job start Tue Mar 31 2020 15:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.47120 * 2 1 4 4 C 1.42905 * 114.00193 * 179.97438 * 3 2 1 5 5 H 1.09000 * 112.84650 * 21.69710 * 4 3 2 6 6 C 1.53774 * 113.61578 * 250.49889 * 4 3 2 7 7 C 1.53779 * 87.08211 * 220.02197 * 6 4 3 8 8 H 1.08997 * 113.61968 * 140.06818 * 7 6 4 9 9 N 1.46506 * 113.61317 * 270.88861 * 7 6 4 10 10 C 1.34779 * 119.99518 * 255.49341 * 9 7 6 11 11 O 1.21582 * 120.00164 * 359.97438 * 10 9 7 12 12 N 1.34774 * 119.99899 * 179.97438 * 10 9 7 13 13 C 1.46503 * 120.00078 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46798 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.47423 * 59.99897 * 14 13 12 16 16 C 1.53001 * 109.47283 * 299.99316 * 14 13 12 17 17 C 1.53002 * 109.46852 * 179.97438 * 14 13 12 18 18 C 1.50703 * 109.47207 * 179.97438 * 17 14 13 19 19 H 1.07994 * 119.99603 * 359.97438 * 18 17 14 20 20 C 1.37875 * 119.99838 * 180.02562 * 18 17 14 21 21 N 1.31513 * 120.00380 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99848 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 239.99776 * 22 20 18 25 25 H 1.48500 * 109.47454 * 119.99769 * 22 20 18 26 26 C 1.53780 * 113.60875 * 152.99962 * 4 3 2 27 27 H 1.08991 * 113.61964 * 25.43476 * 26 4 3 28 28 O 1.42896 * 113.61389 * 254.52905 * 26 4 3 29 29 C 1.42901 * 114.00318 * 112.50599 * 28 26 4 30 30 H 1.08991 * 109.47515 * 299.99678 * 1 2 3 31 31 H 1.08996 * 109.46772 * 60.00446 * 1 2 3 32 32 H 1.09004 * 109.46587 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.48032 * 239.99904 * 2 1 3 34 34 H 1.09004 * 109.47259 * 119.99916 * 2 1 3 35 35 H 1.08994 * 113.61646 * 105.47252 * 6 4 3 36 36 H 1.09003 * 113.61407 * 334.56564 * 6 4 3 37 37 H 0.96995 * 120.00065 * 75.49019 * 9 7 6 38 38 H 0.97009 * 120.00213 * 359.97438 * 12 10 9 39 39 H 1.08999 * 109.47202 * 60.00100 * 13 12 10 40 40 H 1.08998 * 109.47018 * 299.99734 * 13 12 10 41 41 H 1.09000 * 109.47074 * 179.97438 * 15 14 13 42 42 H 1.08995 * 109.47527 * 300.00033 * 15 14 13 43 43 H 1.08998 * 109.47142 * 59.99789 * 15 14 13 44 44 H 1.08993 * 109.47330 * 300.00719 * 16 14 13 45 45 H 1.09008 * 109.46541 * 60.00618 * 16 14 13 46 46 H 1.09004 * 109.47445 * 180.02562 * 16 14 13 47 47 H 1.09005 * 109.47493 * 59.99815 * 17 14 13 48 48 H 1.08998 * 109.47006 * 299.99778 * 17 14 13 49 49 H 0.97001 * 119.99667 * 0.02562 * 21 20 18 50 50 H 1.09000 * 109.46734 * 300.00424 * 29 28 26 51 51 H 1.09002 * 109.46615 * 59.99950 * 29 28 26 52 52 H 1.08989 * 109.47468 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.9267 0.5632 -0.3704 6 6 4.0073 1.9779 1.3289 7 6 4.9914 2.8079 0.4877 8 1 5.1658 3.8092 0.8814 9 7 6.2325 2.0985 0.1670 10 6 7.3716 2.4051 0.8190 11 8 7.3692 3.2706 1.6729 12 7 8.5132 1.7522 0.5244 13 6 9.7515 2.0858 1.2326 14 6 10.8894 1.2050 0.7128 15 6 11.0781 1.4472 -0.7860 16 6 10.5456 -0.2665 0.9524 17 6 12.1828 1.5538 1.4521 18 6 13.3036 0.6858 0.9406 19 1 13.1123 -0.0421 0.1661 20 6 14.5727 0.8203 1.4622 21 7 14.8055 1.7064 2.4057 22 14 15.9620 -0.2552 0.8277 23 1 15.4431 -1.1637 -0.2262 24 1 16.5152 -1.0603 1.9462 25 1 17.0323 0.6030 0.2590 26 6 3.9459 2.7603 -0.6391 27 1 3.2276 3.5792 -0.6030 28 8 4.5122 2.5741 -1.9378 29 6 3.7559 3.1715 -2.9929 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8935 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.4887 1.2043 1.9270 36 1 3.3056 2.5830 1.9030 37 1 6.2344 1.4083 -0.5144 38 1 8.5151 1.0614 -0.1567 39 1 9.6173 1.9128 2.3004 40 1 9.9963 3.1342 1.0623 41 1 11.8890 0.8199 -1.1561 42 1 10.1568 1.1990 -1.3129 43 1 11.3231 2.4954 -0.9566 44 1 10.4112 -0.4390 2.0202 45 1 9.6242 -0.5147 0.4254 46 1 11.3565 -0.8941 0.5825 47 1 12.0488 1.3816 2.5200 48 1 12.4276 2.6021 1.2810 49 1 14.0841 2.2651 2.7349 50 1 2.7557 2.7387 -3.0130 51 1 3.6836 4.2460 -2.8246 52 1 4.2513 2.9851 -3.9456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355180180.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:06 Heat of formation + Delta-G solvation = -117.583409 kcal Electronic energy + Delta-G solvation = -28834.393432 eV Core-core repulsion = 24834.558515 eV Total energy + Delta-G solvation = -3999.834917 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.79385 -39.39837 -37.67542 -37.28010 -36.05416 -33.74684 -32.94399 -31.95801 -31.08678 -27.42825 -26.67349 -26.55460 -26.26948 -24.86066 -24.52395 -23.17000 -22.83248 -21.06562 -19.84992 -18.98753 -18.10305 -17.62216 -16.94983 -16.46382 -16.15397 -15.91341 -15.81356 -15.27239 -15.22078 -14.57697 -14.37550 -13.84399 -13.80152 -13.64699 -13.49996 -13.42934 -13.23386 -13.04785 -12.76241 -12.54422 -12.27057 -12.10538 -11.83294 -11.73179 -11.61324 -11.32231 -11.22843 -11.14508 -11.13396 -10.99241 -10.62861 -10.24058 -10.20765 -10.11367 -10.06092 -9.96498 -9.66539 -9.43750 -9.15915 -8.58775 -8.45241 -8.29320 -6.31209 -4.00116 2.70877 3.09177 3.34678 3.44634 3.48652 3.58328 3.60676 4.05790 4.14472 4.37682 4.49809 4.54773 4.56950 4.65295 4.76815 4.87755 4.95208 5.05261 5.09594 5.13426 5.32945 5.34237 5.43053 5.43898 5.46635 5.56214 5.59438 5.63198 5.65287 5.68632 5.70090 6.13881 6.16431 6.22242 6.36153 6.40111 6.54805 6.58707 6.68496 6.76458 6.91682 6.98222 7.01839 7.04127 7.09954 7.37821 7.52504 8.16947 8.24722 8.50513 8.76992 8.92568 9.70861 11.08859 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.022684 B = 0.002057 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.041769 B =13607.287911 C =13722.694499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.376 6.376 4 C 0.050 3.950 5 H 0.094 0.906 6 C -0.170 4.170 7 C 0.154 3.846 8 H 0.113 0.887 9 N -0.725 5.725 10 C 0.703 3.297 11 O -0.594 6.594 12 N -0.736 5.736 13 C 0.147 3.853 14 C -0.065 4.065 15 C -0.126 4.126 16 C -0.125 4.125 17 C 0.022 3.978 18 C -0.591 4.591 19 H 0.054 0.946 20 C 0.012 3.988 21 N -0.916 5.916 22 Si 1.072 2.928 23 H -0.290 1.290 24 H -0.289 1.289 25 H -0.288 1.288 26 C 0.061 3.939 27 H 0.107 0.893 28 O -0.371 6.371 29 C 0.031 3.969 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.399 0.601 38 H 0.394 0.606 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.030 0.970 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.029 0.971 46 H 0.067 0.933 47 H 0.009 0.991 48 H 0.009 0.991 49 H 0.270 0.730 50 H 0.043 0.957 51 H 0.043 0.957 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.571 -2.314 -9.193 30.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.295 6.295 4 C -0.009 4.009 5 H 0.111 0.889 6 C -0.210 4.210 7 C 0.047 3.953 8 H 0.131 0.869 9 N -0.380 5.380 10 C 0.403 3.597 11 O -0.473 6.473 12 N -0.391 5.391 13 C 0.023 3.977 14 C -0.066 4.066 15 C -0.183 4.183 16 C -0.183 4.183 17 C -0.015 4.015 18 C -0.629 4.629 19 H 0.072 0.928 20 C -0.192 4.192 21 N -0.552 5.552 22 Si 0.901 3.099 23 H -0.216 1.216 24 H -0.215 1.215 25 H -0.215 1.215 26 C 0.002 3.998 27 H 0.125 0.875 28 O -0.289 6.289 29 C -0.066 4.066 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.234 0.766 38 H 0.229 0.771 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.049 0.951 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.048 0.952 46 H 0.086 0.914 47 H 0.027 0.973 48 H 0.027 0.973 49 H 0.080 0.920 50 H 0.062 0.938 51 H 0.062 0.938 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -26.870 -1.777 -8.261 28.167 hybrid contribution -1.794 -0.434 -0.819 2.019 sum -28.663 -2.211 -9.080 30.148 Atomic orbital electron populations 1.21749 0.93738 1.02314 1.03070 1.22519 0.95561 0.83816 1.00186 1.87915 1.20422 1.26586 1.94604 1.24480 0.81289 0.98786 0.96321 0.88867 1.23833 0.98783 1.01315 0.97045 1.21662 0.82523 0.97527 0.93634 0.86917 1.44544 1.07013 1.43072 1.43412 1.15961 0.80244 0.81871 0.81598 1.90909 1.85292 1.35188 1.35862 1.45322 1.08188 1.41849 1.43702 1.21482 0.81322 0.99237 0.95630 1.20763 0.95228 0.94298 0.96310 1.21742 0.99915 1.01650 0.94986 1.21744 0.99515 0.96381 1.00627 1.19221 0.90818 0.96687 0.94781 1.22031 0.94909 1.22132 1.23810 0.92783 1.25789 0.99844 0.98336 0.95189 1.70707 1.36439 1.21223 1.26847 0.83504 0.75341 0.75463 0.75608 1.21607 1.21514 1.21496 1.24588 0.95136 0.97351 0.82757 0.87510 1.87914 1.49684 1.76767 1.14530 1.22824 0.96042 0.97096 0.90614 0.91798 0.91951 0.91090 0.93357 0.93224 0.89770 0.88031 0.76633 0.77081 0.92113 0.92093 0.91370 0.95111 0.93469 0.93493 0.95168 0.91356 0.97281 0.97257 0.91984 0.93816 0.93786 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.28 37.16 0.38 -0.45 16 2 C 0.06 0.38 6.51 37.16 0.24 0.62 16 3 O -0.38 -3.32 10.35 -35.23 -0.36 -3.69 16 4 C 0.05 0.42 4.02 -25.92 -0.10 0.31 16 5 H 0.09 0.75 7.89 -51.93 -0.41 0.34 16 6 C -0.17 -1.53 7.71 -25.92 -0.20 -1.73 16 7 C 0.15 1.61 4.24 -67.11 -0.28 1.33 16 8 H 0.11 1.34 7.53 -51.93 -0.39 0.95 16 9 N -0.73 -8.47 5.01 -57.88 -0.29 -8.76 16 10 C 0.70 11.02 8.57 -86.92 -0.74 10.28 16 11 O -0.59 -11.72 15.98 5.29 0.08 -11.64 16 12 N -0.74 -11.04 4.96 -65.22 -0.32 -11.37 16 13 C 0.15 2.66 4.56 -4.04 -0.02 2.65 16 14 C -0.07 -1.26 0.54 -154.51 -0.08 -1.35 16 15 C -0.13 -2.26 8.05 37.15 0.30 -1.96 16 16 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 17 C 0.02 0.55 3.35 -27.88 -0.09 0.46 16 18 C -0.59 -15.91 7.65 -34.44 -0.26 -16.17 16 19 H 0.05 1.42 5.68 -52.49 -0.30 1.12 16 20 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 21 N -0.92 -27.89 13.65 55.43 0.76 -27.14 16 22 Si 1.07 25.12 29.90 -169.99 -5.08 20.04 16 23 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.06 0.53 4.05 -25.92 -0.10 0.43 16 27 H 0.11 0.82 7.87 -51.93 -0.41 0.41 16 28 O -0.37 -3.46 9.95 -35.23 -0.35 -3.81 16 29 C 0.03 0.21 10.85 101.05 1.10 1.31 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.40 3.92 8.29 -40.82 -0.34 3.58 16 38 H 0.39 5.03 6.18 -40.82 -0.25 4.78 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.07 1.33 6.62 -51.93 -0.34 0.98 16 42 H 0.03 0.45 6.86 -51.93 -0.36 0.10 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.03 0.44 6.86 -51.92 -0.36 0.08 16 46 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 47 H 0.01 0.24 8.01 -51.93 -0.42 -0.18 16 48 H 0.01 0.24 8.01 -51.93 -0.42 -0.17 16 49 H 0.27 8.22 7.22 -40.82 -0.29 7.93 16 50 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 51 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 52 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 412.63 15.07 6.22 6.22 Total: -1.00 -32.93 412.63 -8.37 -41.30 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -9.34 Total: 4.84 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 0.32 Total: -5.99 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.14 Total: -47.27 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.63 Total: -19.14 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.08 Total: 20.04 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.93 -8.37 -41.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355180180.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.282 kcal (2) G-P(sol) polarization free energy of solvation -32.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds