Wall clock time and date at job start Tue Mar 31 2020 15:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.47120 * 2 1 4 4 C 1.42905 * 114.00193 * 179.97438 * 3 2 1 5 5 H 1.09000 * 112.84650 * 21.69710 * 4 3 2 6 6 C 1.53774 * 113.61578 * 250.49889 * 4 3 2 7 7 C 1.53779 * 87.08211 * 220.02197 * 6 4 3 8 8 H 1.08997 * 113.61968 * 140.06818 * 7 6 4 9 9 N 1.46506 * 113.61317 * 270.88861 * 7 6 4 10 10 C 1.34779 * 119.99518 * 255.49341 * 9 7 6 11 11 O 1.21582 * 120.00164 * 359.97438 * 10 9 7 12 12 N 1.34774 * 119.99899 * 179.97438 * 10 9 7 13 13 C 1.46503 * 120.00078 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46798 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.47423 * 59.99897 * 14 13 12 16 16 C 1.53001 * 109.47283 * 299.99316 * 14 13 12 17 17 C 1.53002 * 109.46852 * 179.97438 * 14 13 12 18 18 C 1.50703 * 109.47207 * 179.97438 * 17 14 13 19 19 H 1.07994 * 119.99603 * 359.97438 * 18 17 14 20 20 C 1.37875 * 119.99838 * 180.02562 * 18 17 14 21 21 N 1.31513 * 120.00380 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99848 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 239.99776 * 22 20 18 25 25 H 1.48500 * 109.47454 * 119.99769 * 22 20 18 26 26 C 1.53780 * 113.60875 * 152.99962 * 4 3 2 27 27 H 1.08991 * 113.61964 * 25.43476 * 26 4 3 28 28 O 1.42896 * 113.61389 * 254.52905 * 26 4 3 29 29 C 1.42901 * 114.00318 * 112.50599 * 28 26 4 30 30 H 1.08991 * 109.47515 * 299.99678 * 1 2 3 31 31 H 1.08996 * 109.46772 * 60.00446 * 1 2 3 32 32 H 1.09004 * 109.46587 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.48032 * 239.99904 * 2 1 3 34 34 H 1.09004 * 109.47259 * 119.99916 * 2 1 3 35 35 H 1.08994 * 113.61646 * 105.47252 * 6 4 3 36 36 H 1.09003 * 113.61407 * 334.56564 * 6 4 3 37 37 H 0.96995 * 120.00065 * 75.49019 * 9 7 6 38 38 H 0.97009 * 120.00213 * 359.97438 * 12 10 9 39 39 H 1.08999 * 109.47202 * 60.00100 * 13 12 10 40 40 H 1.08998 * 109.47018 * 299.99734 * 13 12 10 41 41 H 1.09000 * 109.47074 * 179.97438 * 15 14 13 42 42 H 1.08995 * 109.47527 * 300.00033 * 15 14 13 43 43 H 1.08998 * 109.47142 * 59.99789 * 15 14 13 44 44 H 1.08993 * 109.47330 * 300.00719 * 16 14 13 45 45 H 1.09008 * 109.46541 * 60.00618 * 16 14 13 46 46 H 1.09004 * 109.47445 * 180.02562 * 16 14 13 47 47 H 1.09005 * 109.47493 * 59.99815 * 17 14 13 48 48 H 1.08998 * 109.47006 * 299.99778 * 17 14 13 49 49 H 0.97001 * 119.99667 * 0.02562 * 21 20 18 50 50 H 1.09000 * 109.46734 * 300.00424 * 29 28 26 51 51 H 1.09002 * 109.46615 * 59.99950 * 29 28 26 52 52 H 1.08989 * 109.47468 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.9267 0.5632 -0.3704 6 6 4.0073 1.9779 1.3289 7 6 4.9914 2.8079 0.4877 8 1 5.1658 3.8092 0.8814 9 7 6.2325 2.0985 0.1670 10 6 7.3716 2.4051 0.8190 11 8 7.3692 3.2706 1.6729 12 7 8.5132 1.7522 0.5244 13 6 9.7515 2.0858 1.2326 14 6 10.8894 1.2050 0.7128 15 6 11.0781 1.4472 -0.7860 16 6 10.5456 -0.2665 0.9524 17 6 12.1828 1.5538 1.4521 18 6 13.3036 0.6858 0.9406 19 1 13.1123 -0.0421 0.1661 20 6 14.5727 0.8203 1.4622 21 7 14.8055 1.7064 2.4057 22 14 15.9620 -0.2552 0.8277 23 1 15.4431 -1.1637 -0.2262 24 1 16.5152 -1.0603 1.9462 25 1 17.0323 0.6030 0.2590 26 6 3.9459 2.7603 -0.6391 27 1 3.2276 3.5792 -0.6030 28 8 4.5122 2.5741 -1.9378 29 6 3.7559 3.1715 -2.9929 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8935 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.4887 1.2043 1.9270 36 1 3.3056 2.5830 1.9030 37 1 6.2344 1.4083 -0.5144 38 1 8.5151 1.0614 -0.1567 39 1 9.6173 1.9128 2.3004 40 1 9.9963 3.1342 1.0623 41 1 11.8890 0.8199 -1.1561 42 1 10.1568 1.1990 -1.3129 43 1 11.3231 2.4954 -0.9566 44 1 10.4112 -0.4390 2.0202 45 1 9.6242 -0.5147 0.4254 46 1 11.3565 -0.8941 0.5825 47 1 12.0488 1.3816 2.5200 48 1 12.4276 2.6021 1.2810 49 1 14.0841 2.2651 2.7349 50 1 2.7557 2.7387 -3.0130 51 1 3.6836 4.2460 -2.8246 52 1 4.2513 2.9851 -3.9456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355180180.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:03 Heat of formation + Delta-G solvation = -140.388154 kcal Electronic energy + Delta-G solvation = -28835.382320 eV Core-core repulsion = 24834.558515 eV Total energy + Delta-G solvation = -4000.823805 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.71367 -40.51876 -38.84280 -38.25143 -36.87709 -35.44214 -34.33117 -33.36767 -31.68712 -28.64482 -28.03720 -27.99897 -27.69213 -25.56077 -25.49915 -24.67857 -23.66823 -22.29105 -20.75235 -20.34723 -19.50788 -18.46823 -18.34848 -17.74810 -16.94707 -16.77042 -16.51841 -16.45072 -16.13566 -15.87667 -15.65258 -15.48554 -15.30701 -15.01263 -14.41352 -14.26128 -14.11914 -14.00615 -13.77954 -13.65713 -13.64960 -13.09506 -13.03341 -12.81861 -12.72813 -12.62007 -12.42701 -12.38678 -12.20658 -11.93235 -11.88975 -11.86930 -11.84890 -11.62420 -11.46075 -11.19292 -10.86002 -10.48901 -10.48757 -10.42420 -10.25378 -9.78087 -8.58379 -6.27221 1.55022 1.59642 1.64681 1.79252 2.09145 2.45803 2.61384 2.95754 3.21704 3.24883 3.42409 3.45179 3.75387 3.88769 3.89294 4.00758 4.12569 4.18179 4.22182 4.34394 4.40999 4.49744 4.54937 4.57392 4.59237 4.65178 4.67980 4.78608 4.81189 4.86689 4.90098 4.90576 4.97603 5.00209 5.03386 5.03588 5.27154 5.27735 5.33580 5.34715 5.45038 5.47932 5.51768 5.66254 5.96012 6.07041 6.11451 6.29593 6.29706 6.66804 7.06826 7.53380 7.55196 8.81644 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.022684 B = 0.002057 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.041769 B =13607.287911 C =13722.694499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.388 6.388 4 C 0.059 3.941 5 H 0.100 0.900 6 C -0.164 4.164 7 C 0.142 3.858 8 H 0.095 0.905 9 N -0.706 5.706 10 C 0.702 3.298 11 O -0.638 6.638 12 N -0.723 5.723 13 C 0.162 3.838 14 C -0.058 4.058 15 C -0.120 4.120 16 C -0.120 4.120 17 C 0.023 3.977 18 C -0.587 4.587 19 H 0.065 0.935 20 C -0.048 4.048 21 N -0.948 5.948 22 Si 1.120 2.880 23 H -0.263 1.263 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.071 3.929 27 H 0.117 0.883 28 O -0.386 6.386 29 C 0.026 3.974 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.412 0.588 38 H 0.409 0.591 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.035 0.965 44 H 0.036 0.964 45 H 0.071 0.929 46 H 0.055 0.945 47 H -0.018 1.018 48 H -0.018 1.018 49 H 0.253 0.747 50 H 0.050 0.950 51 H 0.048 0.952 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.412 -4.283 -11.495 32.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.308 6.308 4 C 0.000 4.000 5 H 0.118 0.882 6 C -0.203 4.203 7 C 0.034 3.966 8 H 0.113 0.887 9 N -0.361 5.361 10 C 0.402 3.598 11 O -0.520 6.520 12 N -0.379 5.379 13 C 0.037 3.963 14 C -0.059 4.059 15 C -0.177 4.177 16 C -0.177 4.177 17 C -0.014 4.014 18 C -0.625 4.625 19 H 0.083 0.917 20 C -0.245 4.245 21 N -0.586 5.586 22 Si 0.942 3.058 23 H -0.187 1.187 24 H -0.211 1.211 25 H -0.211 1.211 26 C 0.011 3.989 27 H 0.135 0.865 28 O -0.304 6.304 29 C -0.070 4.070 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.249 0.751 38 H 0.247 0.753 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.000 1.000 48 H 0.000 1.000 49 H 0.062 0.938 50 H 0.069 0.931 51 H 0.067 0.933 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -28.774 -3.783 -10.619 30.904 hybrid contribution -1.331 0.219 -0.110 1.353 sum -30.105 -3.564 -10.729 32.158 Atomic orbital electron populations 1.21760 0.92857 1.03306 1.02748 1.22698 0.96346 0.82991 1.00705 1.87901 1.20368 1.27900 1.94600 1.24359 0.81411 0.98793 0.95420 0.88204 1.23779 0.98308 1.00896 0.97366 1.21801 0.82417 0.96887 0.95466 0.88700 1.44347 1.06178 1.42880 1.42721 1.16076 0.81003 0.81338 0.81353 1.90888 1.86008 1.37153 1.37916 1.44971 1.07039 1.42205 1.43724 1.21043 0.82340 0.97915 0.94983 1.20594 0.92846 0.95701 0.96718 1.21676 1.01492 1.00734 0.93828 1.21677 1.00997 0.94470 1.00560 1.19154 0.93556 0.94814 0.93899 1.22400 0.95253 1.21694 1.23122 0.91650 1.27352 1.03327 0.98912 0.94876 1.70854 1.35913 1.22896 1.28970 0.82895 0.72690 0.74323 0.75866 1.18732 1.21130 1.21141 1.24487 0.94153 0.97979 0.82248 0.86526 1.87877 1.50486 1.77132 1.14942 1.22970 0.96340 0.97366 0.90305 0.92269 0.92105 0.89476 0.92593 0.92928 0.90358 0.87472 0.75102 0.75291 0.93796 0.93933 0.92614 0.91067 0.94590 0.94500 0.91016 0.92630 0.99950 0.99994 0.93770 0.93102 0.93314 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 71.98 0.74 -0.62 16 2 C 0.05 0.56 6.51 71.98 0.47 1.03 16 3 O -0.39 -6.07 10.35 -148.98 -1.54 -7.61 16 4 C 0.06 0.86 4.02 31.12 0.12 0.99 16 5 H 0.10 1.34 7.89 -2.39 -0.02 1.32 16 6 C -0.16 -2.75 7.71 31.12 0.24 -2.51 16 7 C 0.14 2.82 4.24 45.52 0.19 3.01 16 8 H 0.09 2.26 7.53 -2.39 -0.02 2.24 16 9 N -0.71 -15.34 5.01 -455.28 -2.28 -17.62 16 10 C 0.70 21.38 8.57 179.05 1.53 22.91 16 11 O -0.64 -25.46 15.98 -3.97 -0.06 -25.52 16 12 N -0.72 -20.56 4.96 -478.54 -2.37 -22.93 16 13 C 0.16 5.91 4.56 86.38 0.39 6.31 16 14 C -0.06 -2.22 0.54 -52.18 -0.03 -2.24 16 15 C -0.12 -4.11 8.05 71.98 0.58 -3.54 16 16 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 17 C 0.02 1.19 3.35 29.85 0.10 1.29 16 18 C -0.59 -31.84 7.65 25.60 0.20 -31.64 16 19 H 0.07 3.36 5.68 -2.91 -0.02 3.34 16 20 C -0.05 -2.78 5.46 84.65 0.46 -2.32 16 21 N -0.95 -59.56 13.65 21.45 0.29 -59.27 16 22 Si 1.12 50.12 29.90 68.60 2.05 52.17 16 23 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 24 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 26 C 0.07 1.10 4.05 31.12 0.13 1.23 16 27 H 0.12 1.58 7.87 -2.39 -0.02 1.56 16 28 O -0.39 -6.31 9.95 -148.98 -1.48 -7.79 16 29 C 0.03 0.30 10.85 113.37 1.23 1.53 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.41 6.96 8.29 -92.71 -0.77 6.19 16 38 H 0.41 9.05 6.18 -92.70 -0.57 8.48 16 39 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.05 2.06 6.62 -2.39 -0.02 2.04 16 42 H 0.07 1.85 6.86 -2.39 -0.02 1.84 16 43 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.07 1.83 6.86 -2.38 -0.02 1.81 16 46 H 0.05 2.04 6.62 -2.39 -0.02 2.02 16 47 H -0.02 -0.99 8.01 -2.38 -0.02 -1.01 16 48 H -0.02 -1.02 8.01 -2.39 -0.02 -1.04 16 49 H 0.25 16.26 7.22 -92.71 -0.67 15.59 16 50 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 51 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 52 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -73.36 412.63 1.20 -72.16 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -0.34 Total: 24.48 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 6.94 Total: -8.06 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -4.36 Total: -99.82 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -3.09 Total: -40.92 kcal Atomic # 14 Polarization: 50.12 SS G_CDS: 2.05 Total: 52.17 kcal Total: -73.36 1.20 -72.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355180180.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.233 kcal (2) G-P(sol) polarization free energy of solvation -73.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds