Wall clock time and date at job start Tue Mar 31 2020 15:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 113.99812 * 2 1 4 4 C 1.53001 * 109.47035 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47008 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.47131 * 180.02562 * 5 4 3 7 7 O 1.21289 * 119.99704 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00384 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00397 * 174.71516 * 8 6 5 10 10 C 1.53004 * 109.45869 * 299.88821 * 9 8 6 11 11 C 1.52998 * 109.47272 * 304.37887 * 10 9 8 12 12 O 1.42892 * 109.46936 * 182.53954 * 11 10 9 13 13 C 1.42902 * 114.00040 * 179.97438 * 12 11 10 14 14 C 1.53039 * 109.46186 * 179.97438 * 9 8 6 15 15 C 1.53188 * 109.31575 * 301.34802 * 14 9 8 16 16 N 1.46932 * 108.77292 * 305.36313 * 15 14 9 17 17 C 1.36933 * 120.63216 * 233.63189 * 16 15 14 18 18 H 1.07994 * 120.00400 * 144.43198 * 17 16 15 19 19 C 1.38812 * 119.99743 * 324.43073 * 17 16 15 20 20 N 1.31624 * 120.00110 * 166.09578 * 19 17 16 21 21 Si 1.86804 * 120.00132 * 346.09433 * 19 17 16 22 22 H 1.48497 * 109.47106 * 84.74954 * 21 19 17 23 23 H 1.48502 * 109.47138 * 204.75009 * 21 19 17 24 24 H 1.48502 * 109.46947 * 324.74635 * 21 19 17 25 25 C 1.46927 * 118.73458 * 53.60892 * 16 15 14 26 26 C 1.53043 * 109.45851 * 59.85924 * 9 8 6 27 27 H 1.09004 * 109.47056 * 299.99679 * 1 2 3 28 28 H 1.08994 * 109.47413 * 60.00024 * 1 2 3 29 29 H 1.09005 * 109.47020 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47360 * 60.00090 * 3 2 1 31 31 H 1.09002 * 109.47167 * 299.99916 * 3 2 1 32 32 H 1.09002 * 109.46517 * 60.00003 * 4 3 2 33 33 H 1.09001 * 109.47425 * 300.00353 * 4 3 2 34 34 H 1.09002 * 109.47442 * 300.00045 * 5 4 3 35 35 H 1.09002 * 109.47217 * 60.00752 * 5 4 3 36 36 H 0.97006 * 119.99931 * 354.72095 * 8 6 5 37 37 H 1.09010 * 109.46552 * 64.38009 * 10 9 8 38 38 H 1.08996 * 109.47058 * 184.37282 * 10 9 8 39 39 H 1.09001 * 109.47132 * 302.54448 * 11 10 9 40 40 H 1.09004 * 109.46691 * 62.54071 * 11 10 9 41 41 H 1.08998 * 109.47506 * 179.97438 * 13 12 11 42 42 H 1.08994 * 109.47588 * 300.00750 * 13 12 11 43 43 H 1.08999 * 109.46886 * 60.00273 * 13 12 11 44 44 H 1.09007 * 109.49733 * 61.29918 * 14 9 8 45 45 H 1.08997 * 109.49400 * 181.39248 * 14 9 8 46 46 H 1.08991 * 109.58757 * 185.57917 * 15 14 9 47 47 H 1.08998 * 109.58554 * 65.15042 * 15 14 9 48 48 H 0.96995 * 119.99964 * 179.97438 * 20 19 17 49 49 H 1.09007 * 109.58408 * 186.60543 * 25 16 15 50 50 H 1.09002 * 109.70509 * 66.25164 * 25 16 15 51 51 H 1.08994 * 109.49462 * 178.60476 * 26 9 8 52 52 H 1.09003 * 109.49789 * 298.70986 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1577 2.5823 -0.0013 6 6 5.6600 2.4634 -0.0026 7 8 6.1816 1.3684 -0.0034 8 7 6.4240 3.5737 -0.0038 9 6 7.8801 3.4612 0.1118 10 6 8.2349 2.7722 1.4311 11 6 7.6001 3.5383 2.5934 12 8 7.9800 2.9295 3.8290 13 6 7.4377 3.5721 4.9845 14 6 8.5033 4.8587 0.0841 15 6 8.1176 5.5596 -1.2223 16 7 8.5062 4.7031 -2.3511 17 6 9.2925 5.1924 -3.3598 18 1 10.0228 4.5533 -3.8336 19 6 9.1510 6.5099 -3.7732 20 7 10.0701 7.0627 -4.5362 21 14 7.6559 7.4985 -3.2469 22 1 7.8999 8.0893 -1.9065 23 1 7.4098 8.5847 -4.2292 24 1 6.4694 6.6075 -3.1867 25 6 8.0354 3.3116 -2.3767 26 6 8.4220 2.6348 -1.0568 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8566 0.6439 -0.8909 33 1 3.8575 0.6435 0.8891 34 1 3.8357 3.1231 -0.8913 35 1 3.8366 3.1235 0.8888 36 1 6.0097 4.4474 -0.0812 37 1 7.8570 1.7498 1.4201 38 1 9.3179 2.7579 1.5537 39 1 7.9432 4.5728 2.5773 40 1 6.5148 3.5140 2.4948 41 1 7.7722 3.0503 5.8811 42 1 7.7778 4.6071 5.0179 43 1 6.3491 3.5489 4.9359 44 1 8.1347 5.4383 0.9305 45 1 9.5883 4.7744 0.1452 46 1 8.6382 6.5146 -1.2920 47 1 7.0405 5.7259 -1.2435 48 1 9.9710 7.9832 -4.8254 49 1 8.5020 2.7833 -3.2083 50 1 6.9519 3.2922 -2.4934 51 1 9.5077 2.5716 -0.9850 52 1 7.9955 1.6323 -1.0221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150970281.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:41 Heat of formation + Delta-G solvation = -112.960991 kcal Electronic energy + Delta-G solvation = -30220.984612 eV Core-core repulsion = 26221.350138 eV Total energy + Delta-G solvation = -3999.634474 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.53229 -38.39368 -37.91222 -37.48732 -34.79186 -33.74260 -32.10980 -31.67103 -30.48362 -29.39399 -28.01090 -26.65524 -25.91626 -24.81462 -23.10829 -22.70379 -22.26533 -20.73802 -20.28919 -18.88767 -17.44484 -16.87516 -16.61499 -16.50133 -16.38798 -16.03930 -15.33014 -15.23613 -15.21356 -15.07626 -14.54883 -14.12458 -13.99039 -13.73909 -13.69060 -13.35265 -13.07730 -12.83992 -12.42558 -12.32561 -12.23548 -11.99778 -11.91177 -11.75091 -11.68579 -11.39060 -11.25484 -11.19367 -11.13860 -11.03938 -10.76902 -10.56407 -10.30282 -10.01524 -9.94373 -9.86756 -9.65049 -9.58845 -9.25402 -8.78119 -8.61045 -6.86880 -5.97760 -3.42961 2.79043 3.15391 3.23447 3.39843 3.43363 3.63815 3.71359 4.47465 4.62501 4.74290 4.85813 4.90166 4.99037 5.01627 5.02642 5.07050 5.14267 5.15877 5.17748 5.22563 5.24925 5.29374 5.31498 5.34798 5.38720 5.45194 5.47386 5.51520 5.60273 5.81176 5.94441 5.95459 6.04983 6.08038 6.12042 6.15693 6.31520 6.39937 6.52887 6.57611 6.61485 6.71493 6.80920 6.88621 6.98497 7.11497 7.71698 8.02246 8.35093 8.41064 8.93361 9.68240 10.10054 11.18561 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.003944 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.827754 B = 7097.146179 C = 9061.489399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.061 3.939 4 C -0.102 4.102 5 C -0.141 4.141 6 C 0.516 3.484 7 O -0.532 6.532 8 N -0.719 5.719 9 C 0.193 3.807 10 C -0.127 4.127 11 C 0.066 3.934 12 O -0.393 6.393 13 C 0.033 3.967 14 C -0.141 4.141 15 C 0.127 3.873 16 N -0.605 5.605 17 C -0.260 4.260 18 H 0.082 0.918 19 C 0.026 3.974 20 N -0.912 5.912 21 Si 0.892 3.108 22 H -0.286 1.286 23 H -0.304 1.304 24 H -0.273 1.273 25 C 0.155 3.845 26 C -0.144 4.144 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.398 0.602 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.044 0.956 41 H 0.083 0.917 42 H 0.039 0.961 43 H 0.037 0.963 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.075 0.925 47 H 0.019 0.981 48 H 0.263 0.737 49 H 0.061 0.939 50 H 0.019 0.981 51 H 0.067 0.933 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.457 -6.877 15.454 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.016 4.016 4 C -0.140 4.140 5 C -0.181 4.181 6 C 0.302 3.698 7 O -0.409 6.409 8 N -0.371 5.371 9 C 0.108 3.892 10 C -0.165 4.165 11 C -0.011 4.011 12 O -0.311 6.311 13 C -0.064 4.064 14 C -0.180 4.180 15 C 0.001 3.999 16 N -0.329 5.329 17 C -0.389 4.389 18 H 0.100 0.900 19 C -0.173 4.173 20 N -0.554 5.554 21 Si 0.722 3.278 22 H -0.214 1.214 23 H -0.232 1.232 24 H -0.199 1.199 25 C 0.029 3.971 26 C -0.184 4.184 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.232 0.768 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.093 0.907 47 H 0.037 0.963 48 H 0.073 0.927 49 H 0.079 0.921 50 H 0.037 0.963 51 H 0.086 0.914 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.774 -7.846 15.346 22.701 hybrid contribution -1.456 1.831 0.261 2.354 sum -16.230 -6.015 15.606 23.306 Atomic orbital electron populations 1.22739 0.81126 1.02746 0.99897 1.87897 1.19589 1.28072 1.95398 1.22571 0.94319 0.84628 1.00068 1.21192 0.91828 0.95921 1.05032 1.21571 0.92919 0.99244 1.04357 1.20399 0.89003 0.84479 0.75903 1.90652 1.74686 1.26608 1.48958 1.46207 1.07332 1.08922 1.74595 1.20197 0.78811 0.96201 0.94024 1.21928 1.01652 1.01284 0.91641 1.22580 0.98317 0.96388 0.83776 1.87881 1.73380 1.55752 1.14136 1.22695 0.97649 0.97371 0.88697 1.22422 1.02042 0.94335 0.99243 1.21349 0.96737 0.95181 0.86668 1.44320 1.59332 1.08048 1.21167 1.18903 1.12382 0.96684 1.10901 0.90012 1.25501 0.97473 0.97607 0.96741 1.69781 1.33688 1.13660 1.38317 0.86839 0.85057 0.79277 0.76601 1.21360 1.23202 1.19872 1.20881 0.96106 0.85358 0.94749 1.22433 1.00937 0.99774 0.95213 0.94182 0.94066 0.89646 0.93419 0.93223 0.90113 0.90340 0.88808 0.89147 0.76753 0.89420 0.90429 0.93225 0.93810 0.89872 0.94214 0.94424 0.92291 0.89866 0.90669 0.96348 0.92721 0.92057 0.96274 0.91405 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.25 10.70 -35.23 -0.38 -4.63 16 3 C 0.06 0.55 5.94 37.16 0.22 0.78 16 4 C -0.10 -1.08 4.87 -26.73 -0.13 -1.21 16 5 C -0.14 -1.36 5.70 -27.88 -0.16 -1.52 16 6 C 0.52 6.87 7.08 -10.99 -0.08 6.79 16 7 O -0.53 -8.77 12.28 5.55 0.07 -8.70 16 8 N -0.72 -9.51 3.22 -47.56 -0.15 -9.67 16 9 C 0.19 2.89 0.35 -131.77 -0.05 2.85 16 10 C -0.13 -1.81 4.35 -26.73 -0.12 -1.92 16 11 C 0.07 0.83 5.49 37.16 0.20 1.04 16 12 O -0.39 -5.29 10.70 -35.23 -0.38 -5.66 16 13 C 0.03 0.31 11.01 101.05 1.11 1.43 16 14 C -0.14 -2.24 4.73 -26.61 -0.13 -2.36 16 15 C 0.13 2.51 3.92 -3.71 -0.01 2.50 16 16 N -0.60 -13.79 2.67 -172.26 -0.46 -14.25 16 17 C -0.26 -7.14 10.00 -15.06 -0.15 -7.29 16 18 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 19 C 0.03 0.74 5.30 -17.43 -0.09 0.64 16 20 N -0.91 -27.62 13.97 55.49 0.78 -26.85 16 21 Si 0.89 21.66 24.36 -169.99 -4.14 17.52 16 22 H -0.29 -6.55 6.43 56.52 0.36 -6.19 16 23 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 24 H -0.27 -6.47 6.91 56.52 0.39 -6.08 16 25 C 0.15 3.10 6.26 -3.66 -0.02 3.07 16 26 C -0.14 -2.49 4.67 -26.56 -0.12 -2.61 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 33 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.40 4.70 7.27 -40.82 -0.30 4.41 16 37 H 0.09 1.41 6.49 -51.92 -0.34 1.07 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.59 6.39 -51.93 -0.33 0.26 16 40 H 0.04 0.53 7.43 -51.93 -0.39 0.14 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.79 6.42 -51.92 -0.33 0.46 16 45 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.08 1.66 4.94 -51.93 -0.26 1.41 16 47 H 0.02 0.35 5.87 -51.93 -0.31 0.05 16 48 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.06 1.28 7.93 -51.93 -0.41 0.86 16 50 H 0.02 0.38 7.74 -51.93 -0.40 -0.02 16 51 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 52 H 0.08 1.47 6.03 -51.93 -0.31 1.16 16 LS Contribution 393.96 15.07 5.94 5.94 Total: -1.00 -32.84 393.96 -6.45 -39.29 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -9.32 Total: 3.49 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 1.59 Total: 3.51 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.16 Total: -50.77 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.69 Total: -18.99 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.14 Total: 17.52 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.84 -6.45 -39.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150970281.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.666 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds