Wall clock time and date at job start Tue Mar 31 2020 15:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 113.99812 * 2 1 4 4 C 1.53001 * 109.47035 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47008 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.47131 * 180.02562 * 5 4 3 7 7 O 1.21289 * 119.99704 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00384 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00397 * 174.71516 * 8 6 5 10 10 C 1.53004 * 109.45869 * 299.88821 * 9 8 6 11 11 C 1.52998 * 109.47272 * 304.37887 * 10 9 8 12 12 O 1.42892 * 109.46936 * 182.53954 * 11 10 9 13 13 C 1.42902 * 114.00040 * 179.97438 * 12 11 10 14 14 C 1.53039 * 109.46186 * 179.97438 * 9 8 6 15 15 C 1.53188 * 109.31575 * 301.34802 * 14 9 8 16 16 N 1.46932 * 108.77292 * 305.36313 * 15 14 9 17 17 C 1.36933 * 120.63216 * 233.63189 * 16 15 14 18 18 H 1.07994 * 120.00400 * 144.43198 * 17 16 15 19 19 C 1.38812 * 119.99743 * 324.43073 * 17 16 15 20 20 N 1.31624 * 120.00110 * 166.09578 * 19 17 16 21 21 Si 1.86804 * 120.00132 * 346.09433 * 19 17 16 22 22 H 1.48497 * 109.47106 * 84.74954 * 21 19 17 23 23 H 1.48502 * 109.47138 * 204.75009 * 21 19 17 24 24 H 1.48502 * 109.46947 * 324.74635 * 21 19 17 25 25 C 1.46927 * 118.73458 * 53.60892 * 16 15 14 26 26 C 1.53043 * 109.45851 * 59.85924 * 9 8 6 27 27 H 1.09004 * 109.47056 * 299.99679 * 1 2 3 28 28 H 1.08994 * 109.47413 * 60.00024 * 1 2 3 29 29 H 1.09005 * 109.47020 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47360 * 60.00090 * 3 2 1 31 31 H 1.09002 * 109.47167 * 299.99916 * 3 2 1 32 32 H 1.09002 * 109.46517 * 60.00003 * 4 3 2 33 33 H 1.09001 * 109.47425 * 300.00353 * 4 3 2 34 34 H 1.09002 * 109.47442 * 300.00045 * 5 4 3 35 35 H 1.09002 * 109.47217 * 60.00752 * 5 4 3 36 36 H 0.97006 * 119.99931 * 354.72095 * 8 6 5 37 37 H 1.09010 * 109.46552 * 64.38009 * 10 9 8 38 38 H 1.08996 * 109.47058 * 184.37282 * 10 9 8 39 39 H 1.09001 * 109.47132 * 302.54448 * 11 10 9 40 40 H 1.09004 * 109.46691 * 62.54071 * 11 10 9 41 41 H 1.08998 * 109.47506 * 179.97438 * 13 12 11 42 42 H 1.08994 * 109.47588 * 300.00750 * 13 12 11 43 43 H 1.08999 * 109.46886 * 60.00273 * 13 12 11 44 44 H 1.09007 * 109.49733 * 61.29918 * 14 9 8 45 45 H 1.08997 * 109.49400 * 181.39248 * 14 9 8 46 46 H 1.08991 * 109.58757 * 185.57917 * 15 14 9 47 47 H 1.08998 * 109.58554 * 65.15042 * 15 14 9 48 48 H 0.96995 * 119.99964 * 179.97438 * 20 19 17 49 49 H 1.09007 * 109.58408 * 186.60543 * 25 16 15 50 50 H 1.09002 * 109.70509 * 66.25164 * 25 16 15 51 51 H 1.08994 * 109.49462 * 178.60476 * 26 9 8 52 52 H 1.09003 * 109.49789 * 298.70986 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1577 2.5823 -0.0013 6 6 5.6600 2.4634 -0.0026 7 8 6.1816 1.3684 -0.0034 8 7 6.4240 3.5737 -0.0038 9 6 7.8801 3.4612 0.1118 10 6 8.2349 2.7722 1.4311 11 6 7.6001 3.5383 2.5934 12 8 7.9800 2.9295 3.8290 13 6 7.4377 3.5721 4.9845 14 6 8.5033 4.8587 0.0841 15 6 8.1176 5.5596 -1.2223 16 7 8.5062 4.7031 -2.3511 17 6 9.2925 5.1924 -3.3598 18 1 10.0228 4.5533 -3.8336 19 6 9.1510 6.5099 -3.7732 20 7 10.0701 7.0627 -4.5362 21 14 7.6559 7.4985 -3.2469 22 1 7.8999 8.0893 -1.9065 23 1 7.4098 8.5847 -4.2292 24 1 6.4694 6.6075 -3.1867 25 6 8.0354 3.3116 -2.3767 26 6 8.4220 2.6348 -1.0568 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8566 0.6439 -0.8909 33 1 3.8575 0.6435 0.8891 34 1 3.8357 3.1231 -0.8913 35 1 3.8366 3.1235 0.8888 36 1 6.0097 4.4474 -0.0812 37 1 7.8570 1.7498 1.4201 38 1 9.3179 2.7579 1.5537 39 1 7.9432 4.5728 2.5773 40 1 6.5148 3.5140 2.4948 41 1 7.7722 3.0503 5.8811 42 1 7.7778 4.6071 5.0179 43 1 6.3491 3.5489 4.9359 44 1 8.1347 5.4383 0.9305 45 1 9.5883 4.7744 0.1452 46 1 8.6382 6.5146 -1.2920 47 1 7.0405 5.7259 -1.2435 48 1 9.9710 7.9832 -4.8254 49 1 8.5020 2.7833 -3.2083 50 1 6.9519 3.2922 -2.4934 51 1 9.5077 2.5716 -0.9850 52 1 7.9955 1.6323 -1.0221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150970281.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:40 Heat of formation + Delta-G solvation = -136.629949 kcal Electronic energy + Delta-G solvation = -30222.010975 eV Core-core repulsion = 26221.350138 eV Total energy + Delta-G solvation = -4000.660837 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.71591 -39.37509 -38.74954 -38.64265 -36.32627 -34.60956 -33.87689 -32.94991 -32.02163 -30.78831 -28.75366 -27.66150 -26.63671 -26.22873 -24.56680 -24.19541 -23.18287 -22.08351 -21.41897 -20.21665 -18.90551 -18.22009 -17.64987 -17.32422 -17.14359 -17.05064 -16.87667 -16.35946 -16.18999 -15.87766 -15.72452 -15.58988 -15.31354 -15.17426 -14.76804 -14.60444 -14.27526 -14.21500 -13.92771 -13.55816 -13.34988 -13.11657 -12.97733 -12.90705 -12.67549 -12.57724 -12.44109 -12.31168 -12.21463 -12.08150 -12.02721 -11.94403 -11.83014 -11.65529 -11.42238 -11.32682 -10.73818 -10.59129 -10.58337 -10.37046 -9.94303 -8.77963 -8.14862 -5.58276 1.31917 1.44249 1.54663 1.77691 2.20161 2.44333 2.80504 2.93211 3.12287 3.33512 3.63530 3.82929 3.90307 4.02371 4.05899 4.16005 4.19148 4.29500 4.32649 4.39462 4.46819 4.49178 4.50524 4.53537 4.54007 4.55857 4.57224 4.60100 4.63702 4.70335 4.77761 4.84292 4.87130 4.93558 4.97160 5.00785 5.06628 5.14178 5.16099 5.20617 5.24198 5.29801 5.35652 5.70033 5.93763 6.16299 6.26156 6.27568 6.70293 6.95827 7.40066 7.61612 8.05221 9.05367 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.003944 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.827754 B = 7097.146179 C = 9061.489399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.424 6.424 3 C 0.062 3.938 4 C -0.098 4.098 5 C -0.131 4.131 6 C 0.511 3.489 7 O -0.569 6.569 8 N -0.713 5.713 9 C 0.202 3.798 10 C -0.118 4.118 11 C 0.071 3.929 12 O -0.420 6.420 13 C 0.026 3.974 14 C -0.130 4.130 15 C 0.121 3.879 16 N -0.616 5.616 17 C -0.255 4.255 18 H 0.036 0.964 19 C -0.035 4.035 20 N -0.964 5.964 21 Si 0.961 3.039 22 H -0.257 1.257 23 H -0.315 1.315 24 H -0.257 1.257 25 C 0.158 3.842 26 C -0.134 4.134 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.113 0.887 35 H 0.124 0.876 36 H 0.410 0.590 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.094 0.906 42 H 0.051 0.949 43 H 0.049 0.951 44 H 0.097 0.903 45 H 0.070 0.930 46 H 0.055 0.945 47 H 0.043 0.957 48 H 0.262 0.738 49 H 0.039 0.961 50 H 0.029 0.971 51 H 0.054 0.946 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.787 -5.463 18.260 26.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.344 6.344 3 C -0.014 4.014 4 C -0.136 4.136 5 C -0.170 4.170 6 C 0.300 3.700 7 O -0.448 6.448 8 N -0.366 5.366 9 C 0.116 3.884 10 C -0.157 4.157 11 C -0.005 4.005 12 O -0.340 6.340 13 C -0.070 4.070 14 C -0.169 4.169 15 C -0.004 4.004 16 N -0.341 5.341 17 C -0.385 4.385 18 H 0.053 0.947 19 C -0.230 4.230 20 N -0.609 5.609 21 Si 0.788 3.212 22 H -0.183 1.183 23 H -0.244 1.244 24 H -0.181 1.181 25 C 0.033 3.967 26 C -0.174 4.174 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.131 0.869 35 H 0.143 0.857 36 H 0.247 0.753 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.116 0.884 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.061 0.939 48 H 0.071 0.929 49 H 0.057 0.943 50 H 0.047 0.953 51 H 0.073 0.927 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.140 -6.442 18.201 26.492 hybrid contribution -0.352 1.247 -0.622 1.438 sum -18.493 -5.195 17.579 26.038 Atomic orbital electron populations 1.22915 0.79451 1.03671 1.00987 1.87852 1.21560 1.29290 1.95655 1.22600 0.92850 0.84349 1.01617 1.21112 0.93390 0.96230 1.02891 1.21569 0.89612 0.99007 1.06835 1.21081 0.90552 0.83714 0.74687 1.90652 1.75659 1.28059 1.50441 1.46115 1.06307 1.09702 1.74511 1.19924 0.80066 0.95182 0.93236 1.21758 1.01351 1.00409 0.92155 1.22504 0.98672 0.96338 0.82998 1.87841 1.74138 1.56847 1.15166 1.22911 0.98411 0.97983 0.87704 1.22293 1.01549 0.94694 0.98388 1.21473 0.97691 0.94131 0.87092 1.44365 1.59150 1.09207 1.21342 1.18741 1.11700 0.96245 1.11807 0.94654 1.26247 1.00454 0.98951 0.97314 1.69952 1.36007 1.14155 1.40809 0.85722 0.80965 0.77367 0.77156 1.18291 1.24423 1.18075 1.20874 0.96221 0.84092 0.95547 1.22279 1.00245 0.99809 0.95075 0.92818 0.93164 0.88985 0.91340 0.92013 0.92757 0.92103 0.86933 0.85749 0.75335 0.91396 0.91090 0.91918 0.92725 0.88737 0.93040 0.93224 0.88427 0.91151 0.92647 0.93888 0.92908 0.94264 0.95261 0.92698 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.42 -8.58 10.70 -148.98 -1.59 -10.18 16 3 C 0.06 0.97 5.94 71.98 0.43 1.40 16 4 C -0.10 -1.93 4.87 30.59 0.15 -1.78 16 5 C -0.13 -2.06 5.70 29.85 0.17 -1.89 16 6 C 0.51 12.40 7.08 87.66 0.62 13.02 16 7 O -0.57 -18.38 12.28 -3.06 -0.04 -18.42 16 8 N -0.71 -16.56 3.22 -422.78 -1.36 -17.93 16 9 C 0.20 5.66 0.35 3.63 0.00 5.67 16 10 C -0.12 -3.19 4.35 30.60 0.13 -3.05 16 11 C 0.07 1.58 5.49 71.98 0.40 1.97 16 12 O -0.42 -10.28 10.70 -148.98 -1.59 -11.87 16 13 C 0.03 0.42 11.01 113.37 1.25 1.66 16 14 C -0.13 -3.77 4.73 30.67 0.15 -3.62 16 15 C 0.12 4.47 3.92 86.36 0.34 4.81 16 16 N -0.62 -27.94 2.67 -698.92 -1.86 -29.80 16 17 C -0.26 -14.45 10.00 84.03 0.84 -13.61 16 18 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 19 C -0.04 -2.01 5.30 84.86 0.45 -1.56 16 20 N -0.96 -60.32 13.97 21.65 0.30 -60.02 16 21 Si 0.96 43.90 24.36 68.60 1.67 45.57 16 22 H -0.26 -10.53 6.43 99.48 0.64 -9.89 16 23 H -0.32 -14.95 7.11 99.48 0.71 -14.24 16 24 H -0.26 -10.91 6.91 99.48 0.69 -10.22 16 25 C 0.16 6.34 6.26 86.39 0.54 6.88 16 26 C -0.13 -4.66 4.67 30.70 0.14 -4.52 16 27 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 33 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 34 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.12 1.18 8.14 -2.39 -0.02 1.17 16 36 H 0.41 7.65 7.27 -92.70 -0.67 6.98 16 37 H 0.07 2.14 6.49 -2.38 -0.02 2.13 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.06 1.22 6.39 -2.39 -0.02 1.21 16 40 H 0.05 1.09 7.43 -2.38 -0.02 1.08 16 41 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.10 2.13 6.42 -2.38 -0.02 2.12 16 45 H 0.07 2.25 8.14 -2.39 -0.02 2.24 16 46 H 0.06 2.30 4.94 -2.39 -0.01 2.29 16 47 H 0.04 1.41 5.87 -2.39 -0.01 1.40 16 48 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 49 H 0.04 1.71 7.93 -2.38 -0.02 1.69 16 50 H 0.03 1.13 7.74 -2.39 -0.02 1.11 16 51 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 52 H 0.08 2.83 6.03 -2.39 -0.01 2.81 16 Total: -1.00 -75.19 393.96 2.50 -72.69 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.13 Total: 23.00 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 6.85 Total: 6.95 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -2.92 Total: -107.75 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -3.23 Total: -40.47 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.67 Total: 45.57 kcal Total: -75.19 2.50 -72.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150970281.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.941 kcal (2) G-P(sol) polarization free energy of solvation -75.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds