Wall clock time and date at job start Tue Mar 31 2020 16:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99908 * 2 1 4 4 H 1.48499 * 109.47262 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47209 * 299.99806 * 3 2 1 6 6 H 1.48502 * 109.47281 * 59.99988 * 3 2 1 7 7 C 1.37877 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00449 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99796 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47381 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46688 * 299.99659 * 10 9 7 12 12 C 1.53000 * 109.47584 * 299.99895 * 11 10 9 13 13 N 1.46896 * 109.47194 * 179.97438 * 12 11 10 14 14 C 1.46958 * 110.99661 * 174.99752 * 13 12 11 15 15 C 1.53058 * 109.36479 * 183.19030 * 14 13 12 16 16 N 1.46961 * 109.36464 * 301.60493 * 15 14 13 17 17 C 1.46893 * 110.99988 * 183.18776 * 16 15 14 18 18 C 1.50702 * 109.47296 * 170.00169 * 17 16 15 19 19 C 1.38234 * 120.00271 * 89.99424 * 18 17 16 20 20 C 1.38230 * 119.99880 * 179.97438 * 19 18 17 21 21 C 1.38235 * 120.00326 * 359.97438 * 20 19 18 22 22 C 1.38234 * 119.99814 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99485 * 269.97552 * 18 17 16 24 24 C 1.46958 * 110.87981 * 59.31853 * 16 15 14 25 25 C 1.46952 * 111.00361 * 298.80176 * 13 12 11 26 26 C 1.53008 * 109.46789 * 60.00075 * 12 11 10 27 27 C 1.53002 * 109.47485 * 59.99758 * 9 7 2 28 28 H 0.96991 * 119.99772 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.47307 * 299.99908 * 9 7 2 30 30 H 1.08997 * 109.47259 * 180.02562 * 10 9 7 31 31 H 1.08998 * 109.46989 * 59.99465 * 10 9 7 32 32 H 1.08996 * 109.47048 * 179.97438 * 11 10 9 33 33 H 1.09007 * 109.47315 * 60.00502 * 11 10 9 34 34 H 1.08997 * 109.47136 * 300.00552 * 12 11 10 35 35 H 1.09007 * 109.48575 * 63.22867 * 14 13 12 36 36 H 1.08996 * 109.51019 * 303.17041 * 14 13 12 37 37 H 1.08993 * 109.49148 * 181.63745 * 15 14 13 38 38 H 1.08995 * 109.48455 * 61.56831 * 15 14 13 39 39 H 1.09003 * 109.47269 * 49.99606 * 17 16 15 40 40 H 1.09009 * 109.47177 * 289.99734 * 17 16 15 41 41 H 1.08001 * 119.99769 * 359.97438 * 19 18 17 42 42 H 1.08000 * 120.00376 * 180.02562 * 20 19 18 43 43 H 1.08000 * 120.00616 * 179.72578 * 21 20 19 44 44 H 1.08001 * 120.00299 * 179.97438 * 22 21 20 45 45 H 1.07997 * 120.00489 * 0.02562 * 23 18 17 46 46 H 1.08993 * 109.49112 * 60.64354 * 24 16 15 47 47 H 1.09001 * 109.48633 * 180.71430 * 24 16 15 48 48 H 1.08999 * 109.48790 * 296.78059 * 25 13 12 49 49 H 1.08999 * 109.49068 * 56.84536 * 25 13 12 50 50 H 1.08997 * 109.47184 * 59.99863 * 26 12 11 51 51 H 1.08998 * 109.46756 * 180.02562 * 26 12 11 52 52 H 1.08997 * 109.47729 * 180.02562 * 27 9 7 53 53 H 1.08997 * 109.46762 * 300.00592 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 3.1259 -3.5815 -1.2469 12 6 2.2473 -3.6632 -2.4967 13 7 3.0926 -3.5852 -3.6955 14 6 2.2961 -3.7794 -4.9151 15 6 3.2227 -3.7706 -6.1333 16 7 3.9522 -2.4957 -6.1814 17 6 4.7975 -2.4178 -7.3803 18 6 5.3348 -1.0174 -7.5260 19 6 6.5377 -0.6739 -6.9377 20 6 7.0307 0.6105 -7.0719 21 6 6.3213 1.5513 -7.7947 22 6 5.1190 1.2075 -8.3838 23 6 4.6250 -0.0765 -8.2482 24 6 4.7487 -2.3016 -4.9618 25 6 3.8220 -2.3104 -3.7437 26 6 1.2530 -2.5002 -2.4979 27 6 0.3720 -2.5805 -1.2490 28 1 -0.4849 0.8400 -0.0004 29 1 0.6241 -2.5567 0.8903 30 1 1.7005 -4.6060 0.0014 31 1 2.8714 -3.6038 0.8922 32 1 3.8345 -4.4097 -1.2458 33 1 3.6710 -2.6375 -1.2469 34 1 1.7023 -4.6071 -2.4967 35 1 1.5681 -2.9732 -5.0062 36 1 1.7752 -4.7353 -4.8614 37 1 2.6308 -3.8854 -7.0413 38 1 3.9333 -4.5934 -6.0555 39 1 4.2057 -2.6733 -8.2593 40 1 5.6279 -3.1175 -7.2854 41 1 7.0921 -1.4091 -6.3733 42 1 7.9707 0.8788 -6.6126 43 1 6.7043 2.5560 -7.8958 44 1 4.5644 1.9426 -8.9482 45 1 3.6852 -0.3448 -8.7077 46 1 5.4766 -3.1078 -4.8707 47 1 5.2693 -1.3455 -5.0158 48 1 3.1114 -1.4876 -3.8214 49 1 4.4140 -2.1956 -2.8357 50 1 1.7979 -1.5562 -2.4979 51 1 0.6267 -2.5586 -3.3881 52 1 -0.1733 -3.5243 -1.2488 53 1 -0.3363 -1.7520 -1.2494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173335131.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:18 Heat of formation + Delta-G solvation = 25.919660 kcal Electronic energy + Delta-G solvation = -29303.259608 eV Core-core repulsion = 25752.789465 eV Total energy + Delta-G solvation = -3550.470143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.221 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.93291 -39.08459 -37.33856 -34.84929 -32.39368 -31.46416 -31.10239 -30.64843 -29.47757 -28.84499 -26.55446 -24.70284 -23.85124 -23.51604 -22.56305 -21.59078 -21.07656 -20.60000 -19.30720 -18.25969 -16.89476 -16.22756 -15.76478 -15.48285 -15.35413 -14.90474 -14.68377 -14.39861 -14.38211 -14.32140 -13.71112 -13.53817 -13.45046 -13.17330 -12.81558 -12.68367 -12.62293 -12.18977 -12.07216 -11.55687 -11.49247 -11.32832 -11.21078 -11.07286 -11.02248 -10.94788 -10.81571 -10.72630 -10.49752 -10.46742 -10.06628 -9.86361 -9.65546 -9.11433 -8.99405 -8.89399 -8.88022 -8.59683 -8.30436 -8.24687 -7.64926 -5.92770 -3.96744 1.23125 1.31729 3.31239 3.40174 3.42810 3.57860 4.11532 4.33754 4.47797 4.63107 4.73156 4.90371 4.99953 5.04344 5.15225 5.25624 5.34140 5.38024 5.39400 5.47379 5.54950 5.59910 5.62254 5.69424 5.77966 5.85193 5.89416 5.91402 5.95104 6.09373 6.15577 6.25810 6.32722 6.35490 6.39605 6.41483 6.51530 6.53326 6.58443 6.59630 6.79923 6.82384 6.89079 6.91416 7.03031 7.07475 7.14581 7.21788 7.44306 7.55045 7.59875 7.68307 7.80343 7.99740 8.21045 8.53828 9.05897 9.66401 11.13086 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.011300 B = 0.003824 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.229070 B = 7320.818451 C = 8889.039016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.879 3.121 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.498 4.498 8 H 0.054 0.946 9 C 0.043 3.957 10 C -0.106 4.106 11 C -0.096 4.096 12 C 0.091 3.909 13 N -0.536 5.536 14 C 0.054 3.946 15 C 0.061 3.939 16 N -0.533 5.533 17 C 0.094 3.906 18 C -0.074 4.074 19 C -0.114 4.114 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.099 4.099 24 C 0.057 3.943 25 C 0.053 3.947 26 C -0.128 4.128 27 C -0.104 4.104 28 H 0.257 0.743 29 H 0.023 0.977 30 H 0.032 0.968 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.037 0.963 47 H 0.078 0.922 48 H 0.050 0.950 49 H 0.084 0.916 50 H 0.074 0.926 51 H 0.030 0.970 52 H 0.012 0.988 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.116 -4.082 -16.606 19.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.708 3.292 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.025 3.975 10 C -0.144 4.144 11 C -0.134 4.134 12 C -0.016 4.016 13 N -0.259 5.259 14 C -0.074 4.074 15 C -0.067 4.067 16 N -0.258 5.258 17 C -0.033 4.033 18 C -0.075 4.075 19 C -0.132 4.132 20 C -0.139 4.139 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.117 4.117 24 C -0.071 4.071 25 C -0.075 4.075 26 C -0.167 4.167 27 C -0.142 4.142 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.055 0.945 47 H 0.096 0.904 48 H 0.069 0.931 49 H 0.102 0.898 50 H 0.093 0.907 51 H 0.049 0.951 52 H 0.030 0.970 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.972 -3.989 -16.607 19.777 hybrid contribution 0.371 1.089 0.004 1.151 sum 10.343 -2.900 -16.602 19.774 Atomic orbital electron populations 1.69875 1.05804 1.25962 1.51384 1.24918 0.94714 0.98694 0.95546 0.86730 0.80328 0.84631 0.77530 1.19819 1.21166 1.21177 1.21168 0.92666 0.90420 1.49337 0.92752 1.18693 0.92705 0.92138 0.93978 1.21547 0.98266 0.98556 0.96068 1.21451 0.97312 1.01052 0.93603 1.21703 0.92903 0.98208 0.88799 1.62496 1.28188 1.33114 1.02130 1.22099 0.94934 1.01071 0.89305 1.22151 0.96597 0.89621 0.98286 1.62157 1.28018 1.33838 1.01750 1.21015 0.95655 0.92642 0.94036 1.19745 0.94478 0.95753 0.97512 1.21072 0.96023 0.96700 0.99424 1.21111 1.00039 0.93533 0.99258 1.21140 0.95526 0.99302 0.98136 1.21151 0.96257 0.96469 1.00129 1.21014 0.99087 0.93007 0.98624 1.22282 0.94982 1.00766 0.89065 1.22183 0.96868 0.91449 0.97029 1.21980 0.97749 0.99301 0.97655 1.21458 0.98644 0.99181 0.94936 0.93292 0.95924 0.94881 0.93506 0.93972 0.91167 0.91603 0.93566 0.90849 0.90817 0.94325 0.90125 0.94102 0.86353 0.86207 0.86323 0.86209 0.86073 0.94522 0.90373 0.93142 0.89825 0.90749 0.95104 0.96959 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.88 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.50 -13.15 6.61 -34.44 -0.23 -13.38 16 8 H 0.05 1.44 6.71 -52.49 -0.35 1.08 16 9 C 0.04 1.06 2.58 -91.77 -0.24 0.82 16 10 C -0.11 -2.20 5.41 -26.73 -0.14 -2.34 16 11 C -0.10 -1.84 4.78 -26.73 -0.13 -1.97 16 12 C 0.09 1.67 2.23 -67.71 -0.15 1.52 16 13 N -0.54 -8.69 4.70 -226.48 -1.06 -9.76 16 14 C 0.05 0.78 5.25 -3.76 -0.02 0.77 16 15 C 0.06 0.75 5.61 -3.76 -0.02 0.73 16 16 N -0.53 -6.89 4.70 -235.90 -1.11 -8.00 16 17 C 0.09 1.00 5.12 -4.98 -0.03 0.98 16 18 C -0.07 -0.83 4.89 -104.62 -0.51 -1.35 16 19 C -0.11 -1.23 7.92 -39.59 -0.31 -1.54 16 20 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 21 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 22 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 23 C -0.10 -1.08 9.70 -39.58 -0.38 -1.47 16 24 C 0.06 0.79 5.25 -3.76 -0.02 0.77 16 25 C 0.05 0.87 4.81 -3.77 -0.02 0.86 16 26 C -0.13 -2.68 4.28 -26.70 -0.11 -2.79 16 27 C -0.10 -2.43 5.24 -26.70 -0.14 -2.57 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.44 4.83 -51.93 -0.25 1.19 16 34 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16 35 H 0.05 0.75 6.60 -51.93 -0.34 0.40 16 36 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 37 H 0.07 0.77 8.07 -51.93 -0.42 0.36 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.76 7.97 -51.93 -0.41 0.35 16 40 H 0.04 0.42 8.06 -51.92 -0.42 0.00 16 41 H 0.12 1.15 7.99 -52.49 -0.42 0.73 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.08 1.08 5.95 -51.93 -0.31 0.77 16 48 H 0.05 0.96 6.46 -51.93 -0.34 0.62 16 49 H 0.08 1.44 6.17 -51.93 -0.32 1.12 16 50 H 0.07 1.75 5.53 -51.93 -0.29 1.46 16 51 H 0.03 0.62 6.59 -51.93 -0.34 0.27 16 52 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 53 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 LS Contribution 387.50 15.07 5.84 5.84 Total: -1.00 -28.08 387.50 -13.63 -41.71 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -9.15 Total: 2.89 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -3.74 Total: -24.31 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: -1.55 Total: -42.41 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.08 -13.63 -41.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173335131.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.628 kcal (2) G-P(sol) polarization free energy of solvation -28.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds