Wall clock time and date at job start Tue Mar 31 2020 16:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99908 * 2 1 4 4 H 1.48499 * 109.47262 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47209 * 299.99806 * 3 2 1 6 6 H 1.48502 * 109.47281 * 59.99988 * 3 2 1 7 7 C 1.37877 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00449 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99796 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47381 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46688 * 299.99659 * 10 9 7 12 12 C 1.53000 * 109.47584 * 299.99895 * 11 10 9 13 13 N 1.46896 * 109.47194 * 179.97438 * 12 11 10 14 14 C 1.46958 * 110.99661 * 174.99752 * 13 12 11 15 15 C 1.53058 * 109.36479 * 183.19030 * 14 13 12 16 16 N 1.46961 * 109.36464 * 301.60493 * 15 14 13 17 17 C 1.46893 * 110.99988 * 183.18776 * 16 15 14 18 18 C 1.50702 * 109.47296 * 170.00169 * 17 16 15 19 19 C 1.38234 * 120.00271 * 89.99424 * 18 17 16 20 20 C 1.38230 * 119.99880 * 179.97438 * 19 18 17 21 21 C 1.38235 * 120.00326 * 359.97438 * 20 19 18 22 22 C 1.38234 * 119.99814 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99485 * 269.97552 * 18 17 16 24 24 C 1.46958 * 110.87981 * 59.31853 * 16 15 14 25 25 C 1.46952 * 111.00361 * 298.80176 * 13 12 11 26 26 C 1.53008 * 109.46789 * 60.00075 * 12 11 10 27 27 C 1.53002 * 109.47485 * 59.99758 * 9 7 2 28 28 H 0.96991 * 119.99772 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.47307 * 299.99908 * 9 7 2 30 30 H 1.08997 * 109.47259 * 180.02562 * 10 9 7 31 31 H 1.08998 * 109.46989 * 59.99465 * 10 9 7 32 32 H 1.08996 * 109.47048 * 179.97438 * 11 10 9 33 33 H 1.09007 * 109.47315 * 60.00502 * 11 10 9 34 34 H 1.08997 * 109.47136 * 300.00552 * 12 11 10 35 35 H 1.09007 * 109.48575 * 63.22867 * 14 13 12 36 36 H 1.08996 * 109.51019 * 303.17041 * 14 13 12 37 37 H 1.08993 * 109.49148 * 181.63745 * 15 14 13 38 38 H 1.08995 * 109.48455 * 61.56831 * 15 14 13 39 39 H 1.09003 * 109.47269 * 49.99606 * 17 16 15 40 40 H 1.09009 * 109.47177 * 289.99734 * 17 16 15 41 41 H 1.08001 * 119.99769 * 359.97438 * 19 18 17 42 42 H 1.08000 * 120.00376 * 180.02562 * 20 19 18 43 43 H 1.08000 * 120.00616 * 179.72578 * 21 20 19 44 44 H 1.08001 * 120.00299 * 179.97438 * 22 21 20 45 45 H 1.07997 * 120.00489 * 0.02562 * 23 18 17 46 46 H 1.08993 * 109.49112 * 60.64354 * 24 16 15 47 47 H 1.09001 * 109.48633 * 180.71430 * 24 16 15 48 48 H 1.08999 * 109.48790 * 296.78059 * 25 13 12 49 49 H 1.08999 * 109.49068 * 56.84536 * 25 13 12 50 50 H 1.08997 * 109.47184 * 59.99863 * 26 12 11 51 51 H 1.08998 * 109.46756 * 180.02562 * 26 12 11 52 52 H 1.08997 * 109.47729 * 180.02562 * 27 9 7 53 53 H 1.08997 * 109.46762 * 300.00592 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 3.1259 -3.5815 -1.2469 12 6 2.2473 -3.6632 -2.4967 13 7 3.0926 -3.5852 -3.6955 14 6 2.2961 -3.7794 -4.9151 15 6 3.2227 -3.7706 -6.1333 16 7 3.9522 -2.4957 -6.1814 17 6 4.7975 -2.4178 -7.3803 18 6 5.3348 -1.0174 -7.5260 19 6 6.5377 -0.6739 -6.9377 20 6 7.0307 0.6105 -7.0719 21 6 6.3213 1.5513 -7.7947 22 6 5.1190 1.2075 -8.3838 23 6 4.6250 -0.0765 -8.2482 24 6 4.7487 -2.3016 -4.9618 25 6 3.8220 -2.3104 -3.7437 26 6 1.2530 -2.5002 -2.4979 27 6 0.3720 -2.5805 -1.2490 28 1 -0.4849 0.8400 -0.0004 29 1 0.6241 -2.5567 0.8903 30 1 1.7005 -4.6060 0.0014 31 1 2.8714 -3.6038 0.8922 32 1 3.8345 -4.4097 -1.2458 33 1 3.6710 -2.6375 -1.2469 34 1 1.7023 -4.6071 -2.4967 35 1 1.5681 -2.9732 -5.0062 36 1 1.7752 -4.7353 -4.8614 37 1 2.6308 -3.8854 -7.0413 38 1 3.9333 -4.5934 -6.0555 39 1 4.2057 -2.6733 -8.2593 40 1 5.6279 -3.1175 -7.2854 41 1 7.0921 -1.4091 -6.3733 42 1 7.9707 0.8788 -6.6126 43 1 6.7043 2.5560 -7.8958 44 1 4.5644 1.9426 -8.9482 45 1 3.6852 -0.3448 -8.7077 46 1 5.4766 -3.1078 -4.8707 47 1 5.2693 -1.3455 -5.0158 48 1 3.1114 -1.4876 -3.8214 49 1 4.4140 -2.1956 -2.8357 50 1 1.7979 -1.5562 -2.4979 51 1 0.6267 -2.5586 -3.3881 52 1 -0.1733 -3.5243 -1.2488 53 1 -0.3363 -1.7520 -1.2494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173335131.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:17 Heat of formation + Delta-G solvation = 11.475656 kcal Electronic energy + Delta-G solvation = -29303.885947 eV Core-core repulsion = 25752.789465 eV Total energy + Delta-G solvation = -3551.096482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.221 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.06701 -40.14426 -38.66799 -36.23224 -34.14831 -32.61864 -32.04984 -31.66193 -31.15841 -30.31340 -27.83422 -26.51345 -25.03322 -24.66146 -23.42648 -23.15868 -22.19203 -21.83509 -20.81264 -19.85615 -17.76191 -17.64088 -17.38920 -16.70814 -16.38550 -16.18177 -16.07108 -15.81460 -15.50895 -15.36883 -15.11784 -14.95278 -14.69433 -14.52028 -14.24967 -13.82147 -13.58405 -13.49165 -13.22821 -13.09701 -12.96061 -12.90916 -12.66232 -12.55552 -12.40163 -12.33751 -12.23308 -11.97471 -11.91684 -11.79977 -11.61384 -11.45967 -11.38655 -10.89916 -10.70733 -10.50298 -10.31901 -9.77886 -9.68600 -9.27797 -9.05404 -8.03842 -6.12936 0.44423 0.53538 1.35191 1.39095 1.47618 2.43412 2.74290 3.02030 3.21589 3.24779 3.81449 3.93304 3.96524 3.99333 4.17817 4.21312 4.23468 4.28386 4.32641 4.37245 4.44180 4.47437 4.54281 4.59908 4.63906 4.72732 4.73446 4.80010 4.80877 4.85809 4.88530 4.90258 4.96465 5.01189 5.02662 5.13874 5.15566 5.16766 5.19292 5.28425 5.44677 5.54307 5.58235 5.64787 5.65009 5.67385 5.72219 5.73485 5.93140 6.05119 6.07062 6.15949 6.23239 6.26573 6.30481 6.47000 6.97315 7.52677 9.00961 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.011300 B = 0.003824 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.229070 B = 7320.818451 C = 8889.039016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.015 3.985 3 Si 0.933 3.067 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.499 4.499 8 H 0.052 0.948 9 C 0.038 3.962 10 C -0.101 4.101 11 C -0.089 4.089 12 C 0.100 3.900 13 N -0.527 5.527 14 C 0.052 3.948 15 C 0.067 3.933 16 N -0.547 5.547 17 C 0.099 3.901 18 C -0.088 4.088 19 C -0.125 4.125 20 C -0.131 4.131 21 C -0.132 4.132 22 C -0.133 4.133 23 C -0.113 4.113 24 C 0.069 3.931 25 C 0.057 3.943 26 C -0.114 4.114 27 C -0.099 4.099 28 H 0.255 0.745 29 H -0.012 1.012 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.025 0.975 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.047 0.953 39 H 0.095 0.905 40 H 0.050 0.950 41 H 0.126 0.874 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.128 0.872 46 H 0.045 0.955 47 H 0.076 0.924 48 H 0.018 0.982 49 H 0.072 0.928 50 H 0.043 0.957 51 H 0.035 0.965 52 H 0.027 0.973 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.726 -5.200 -18.211 22.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.182 4.182 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.209 1.209 7 C -0.537 4.537 8 H 0.070 0.930 9 C 0.020 3.980 10 C -0.139 4.139 11 C -0.126 4.126 12 C -0.008 4.008 13 N -0.250 5.250 14 C -0.076 4.076 15 C -0.060 4.060 16 N -0.272 5.272 17 C -0.028 4.028 18 C -0.088 4.088 19 C -0.143 4.143 20 C -0.149 4.149 21 C -0.150 4.150 22 C -0.150 4.150 23 C -0.132 4.132 24 C -0.059 4.059 25 C -0.071 4.071 26 C -0.153 4.153 27 C -0.138 4.138 28 H 0.065 0.935 29 H 0.006 0.994 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.044 0.956 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.065 0.935 39 H 0.113 0.887 40 H 0.068 0.932 41 H 0.144 0.856 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.153 0.847 45 H 0.146 0.854 46 H 0.063 0.937 47 H 0.094 0.906 48 H 0.036 0.964 49 H 0.091 0.909 50 H 0.062 0.938 51 H 0.054 0.946 52 H 0.045 0.955 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.598 -5.115 -18.220 22.196 hybrid contribution -0.163 1.457 0.505 1.550 sum 11.435 -3.658 -17.715 21.400 Atomic orbital electron populations 1.70014 1.06993 1.26381 1.52578 1.25564 0.95372 1.01592 0.95702 0.85881 0.79620 0.81278 0.77243 1.18979 1.21410 1.20908 1.21407 0.92606 0.91442 1.48250 0.93010 1.18691 0.93189 0.93192 0.92923 1.21452 0.97704 0.97580 0.97131 1.21354 0.97253 1.01000 0.93041 1.21565 0.92352 0.97207 0.89676 1.62539 1.27742 1.32518 1.02177 1.22220 0.95020 1.01043 0.89350 1.22138 0.96467 0.89489 0.97949 1.62122 1.28605 1.34497 1.02018 1.21030 0.95815 0.92594 0.93363 1.19895 0.94823 0.96173 0.97912 1.21263 0.96189 0.97250 0.99611 1.21405 1.00783 0.93483 0.99255 1.21452 0.95485 1.00250 0.97796 1.21436 0.96613 0.96721 1.00279 1.21227 0.99538 0.93445 0.98988 1.22092 0.94351 1.01007 0.88482 1.22104 0.96486 0.90478 0.98080 1.21797 0.97727 0.99274 0.96476 1.21318 0.98317 0.98381 0.95767 0.93540 0.99389 0.92968 0.93434 0.91575 0.93048 0.90296 0.95640 0.89246 0.88636 0.93501 0.88693 0.93214 0.85606 0.84599 0.84512 0.84664 0.85439 0.93689 0.90602 0.96352 0.90923 0.93797 0.94587 0.95481 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.89 11.32 21.45 0.24 -53.65 16 2 C 0.02 0.86 5.30 84.65 0.45 1.30 16 3 Si 0.93 44.52 29.54 68.60 2.03 46.55 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 6 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 7 C -0.50 -26.90 6.61 25.60 0.17 -26.74 16 8 H 0.05 2.77 6.71 -2.91 -0.02 2.75 16 9 C 0.04 1.92 2.58 -11.54 -0.03 1.89 16 10 C -0.10 -4.07 5.41 30.60 0.17 -3.90 16 11 C -0.09 -3.25 4.78 30.59 0.15 -3.11 16 12 C 0.10 3.51 2.23 44.92 0.10 3.61 16 13 N -0.53 -16.22 4.70 -870.45 -4.09 -20.31 16 14 C 0.05 1.39 5.25 86.31 0.45 1.84 16 15 C 0.07 1.45 5.61 86.31 0.48 1.94 16 16 N -0.55 -13.08 4.70 -900.26 -4.23 -17.31 16 17 C 0.10 1.88 5.12 85.56 0.44 2.32 16 18 C -0.09 -1.84 4.89 -19.87 -0.10 -1.93 16 19 C -0.12 -2.52 7.92 22.27 0.18 -2.34 16 20 C -0.13 -2.51 10.05 22.27 0.22 -2.28 16 21 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 22 C -0.13 -2.57 10.05 22.27 0.22 -2.34 16 23 C -0.11 -2.36 9.70 22.27 0.22 -2.14 16 24 C 0.07 1.81 5.25 86.31 0.45 2.27 16 25 C 0.06 1.86 4.81 86.31 0.42 2.27 16 26 C -0.11 -4.80 4.28 30.61 0.13 -4.66 16 27 C -0.10 -4.73 5.24 30.61 0.16 -4.57 16 28 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 29 H -0.01 -0.68 8.14 -2.38 -0.02 -0.69 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 2.09 4.83 -2.38 -0.01 2.08 16 34 H 0.08 2.62 8.11 -2.39 -0.02 2.60 16 35 H 0.03 0.79 6.60 -2.38 -0.02 0.78 16 36 H 0.09 2.12 8.12 -2.39 -0.02 2.10 16 37 H 0.10 1.68 8.07 -2.39 -0.02 1.66 16 38 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 1.53 7.97 -2.39 -0.02 1.51 16 40 H 0.05 0.87 8.06 -2.38 -0.02 0.85 16 41 H 0.13 2.25 7.99 -2.91 -0.02 2.23 16 42 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 43 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 44 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 45 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 46 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.08 2.03 5.95 -2.39 -0.01 2.02 16 48 H 0.02 0.71 6.46 -2.39 -0.02 0.70 16 49 H 0.07 2.50 6.17 -2.39 -0.01 2.48 16 50 H 0.04 2.12 5.53 -2.39 -0.01 2.10 16 51 H 0.04 1.45 6.59 -2.39 -0.02 1.43 16 52 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 53 H 0.05 2.90 6.07 -2.39 -0.01 2.88 16 Total: -1.00 -61.51 387.50 -0.68 -62.19 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.87 Total: 21.34 kcal Atomic # 6 Polarization: -43.31 SS G_CDS: 4.50 Total: -38.81 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -8.08 Total: -91.27 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -61.51 -0.68 -62.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173335131.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.666 kcal (2) G-P(sol) polarization free energy of solvation -61.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds