Wall clock time and date at job start Tue Mar 31 2020 16:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47316 * 2 1 4 4 C 1.46495 * 120.00273 * 95.20777 * 3 2 1 5 5 C 1.50706 * 109.47080 * 83.95967 * 4 3 2 6 6 C 1.38213 * 120.00387 * 260.79661 * 5 4 3 7 7 C 1.38310 * 120.01433 * 179.76839 * 6 5 4 8 8 Br 1.89094 * 119.98687 * 180.27599 * 7 6 5 9 9 C 1.38355 * 120.02768 * 0.51253 * 7 6 5 10 10 C 1.38169 * 120.01755 * 359.73935 * 9 7 6 11 11 C 1.38439 * 120.01049 * 81.07534 * 5 4 3 12 12 F 1.35099 * 120.01351 * 359.97438 * 11 5 4 13 13 C 1.34782 * 119.99765 * 275.20335 * 3 2 1 14 14 O 1.21681 * 119.99882 * 179.97438 * 13 3 2 15 15 C 1.46375 * 119.99718 * 0.02562 * 13 3 2 16 16 H 1.07995 * 120.00321 * 359.97438 * 15 13 3 17 17 C 1.40048 * 119.99622 * 179.97438 * 15 13 3 18 18 N 1.30668 * 120.00190 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99942 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47115 * 89.99999 * 19 17 15 21 21 H 1.48501 * 109.47407 * 209.99656 * 19 17 15 22 22 H 1.48497 * 109.47185 * 330.00158 * 19 17 15 23 23 H 1.09001 * 109.46956 * 55.00638 * 1 2 3 24 24 H 1.08994 * 109.47123 * 175.00970 * 1 2 3 25 25 H 1.09006 * 109.46703 * 295.00940 * 1 2 3 26 26 H 1.08995 * 109.47059 * 239.99514 * 2 1 3 27 27 H 1.09000 * 109.46900 * 119.99782 * 2 1 3 28 28 H 1.09000 * 109.47561 * 203.95472 * 4 3 2 29 29 H 1.09001 * 109.47122 * 323.95892 * 4 3 2 30 30 H 1.08003 * 119.99612 * 359.97438 * 6 5 4 31 31 H 1.08005 * 119.98818 * 179.72438 * 9 7 6 32 32 H 1.07994 * 120.00985 * 179.97438 * 10 9 7 33 33 H 0.97003 * 120.00097 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3711 2.0334 1.2634 5 6 3.7820 1.6637 1.6428 6 6 4.0089 0.6653 2.5713 7 6 5.3037 0.3225 2.9161 8 35 5.6134 -1.0489 4.1807 9 6 6.3724 0.9858 2.3399 10 6 6.1469 1.9877 1.4154 11 6 4.8509 2.3278 1.0658 12 9 4.6296 3.3073 0.1620 13 6 2.1432 2.0518 -1.1625 14 8 2.5484 3.1992 -1.1624 15 6 1.7903 1.4002 -2.4248 16 1 1.4303 0.3820 -2.4247 17 6 1.9195 2.0972 -3.6326 18 7 2.3546 3.3293 -3.6326 19 14 1.4698 1.2655 -5.2436 20 1 0.0359 1.5094 -5.5433 21 1 2.3056 1.8214 -6.3380 22 1 1.7102 -0.1955 -5.1304 23 1 -0.3633 0.5894 -0.8419 24 1 -0.3633 -1.0237 -0.0894 25 1 -0.3633 0.4345 0.9314 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.2978 3.1147 1.1470 29 1 1.6866 1.7049 2.0455 30 1 3.1751 0.1504 3.0252 31 1 7.3831 0.7207 2.6129 32 1 6.9811 2.5057 0.9660 33 1 2.4445 3.8119 -4.4692 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274187758.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:45 Heat of formation + Delta-G solvation = -73.282185 kcal Electronic energy + Delta-G solvation = -20443.097813 eV Core-core repulsion = 17042.787169 eV Total energy + Delta-G solvation = -3400.310644 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 329.017 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.74302 -40.47593 -39.33010 -36.25419 -34.61118 -33.59831 -32.89902 -30.80985 -29.82007 -28.79339 -26.64443 -24.07133 -23.66010 -22.70343 -20.81419 -18.51648 -18.34279 -17.79389 -17.35561 -16.82660 -16.68906 -16.12840 -15.92298 -15.45602 -15.05440 -14.52529 -14.28720 -14.22165 -13.99120 -13.81455 -13.40023 -13.12207 -13.00337 -12.88594 -12.70182 -12.48904 -12.18028 -12.04027 -12.00185 -11.72602 -11.59804 -11.29359 -10.88766 -10.18220 -9.67201 -9.48088 -9.06673 -8.22234 -6.76089 -0.10831 0.08486 0.54393 1.38732 1.39890 1.53986 2.22361 2.34236 2.53674 3.01523 3.34223 3.53622 3.68413 3.80750 4.03330 4.15401 4.28344 4.33256 4.60563 4.66025 4.74515 4.79690 4.82191 4.98449 5.04038 5.05957 5.18605 5.21953 5.38798 5.55597 5.70445 5.86041 6.19977 6.45167 6.94315 7.48809 8.56590 8.75870 Molecular weight = 329.02amu Principal moments of inertia in cm(-1) A = 0.020162 B = 0.003881 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.403187 B = 7212.815085 C = 7750.484199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.123 3.877 3 N -0.639 5.639 4 C 0.163 3.837 5 C -0.137 4.137 6 C -0.047 4.047 7 C -0.111 4.111 8 Br -0.028 7.028 9 C -0.056 4.056 10 C -0.159 4.159 11 C 0.098 3.902 12 F -0.138 7.138 13 C 0.539 3.461 14 O -0.607 6.607 15 C -0.563 4.563 16 H 0.087 0.913 17 C 0.031 3.969 18 N -0.821 5.821 19 Si 0.986 3.014 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.249 1.249 23 H 0.034 0.966 24 H 0.081 0.919 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.052 0.948 29 H 0.106 0.894 30 H 0.162 0.838 31 H 0.169 0.831 32 H 0.153 0.847 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.605 -11.906 15.780 20.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.000 4.000 3 N -0.375 5.375 4 C 0.039 3.961 5 C -0.140 4.140 6 C -0.068 4.068 7 C -0.191 4.191 8 Br 0.057 6.943 9 C -0.076 4.076 10 C -0.179 4.179 11 C 0.077 3.923 12 F -0.116 7.116 13 C 0.344 3.656 14 O -0.492 6.492 15 C -0.600 4.600 16 H 0.105 0.895 17 C -0.184 4.184 18 N -0.451 5.451 19 Si 0.806 3.194 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.173 1.173 23 H 0.053 0.947 24 H 0.100 0.900 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.124 0.876 30 H 0.180 0.820 31 H 0.187 0.813 32 H 0.171 0.829 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.955 -11.606 16.133 20.747 hybrid contribution -0.247 0.814 -1.482 1.709 sum 5.709 -10.792 14.651 19.071 Atomic orbital electron populations 1.22099 0.95964 1.02241 1.01324 1.21316 0.94483 0.82317 1.01925 1.48042 1.69745 1.14813 1.04896 1.19935 0.90456 0.97991 0.87707 1.20633 0.96429 0.98338 0.98620 1.21024 0.96673 0.94308 0.94746 1.21878 0.95703 0.99884 1.01599 1.96704 1.96573 1.46818 1.54184 1.21191 0.99927 0.92875 0.93571 1.21371 0.94912 1.00712 1.00891 1.18449 0.95393 0.88709 0.89717 1.91675 1.95644 1.59632 1.64696 1.18599 0.77592 0.85419 0.83950 1.90599 1.51684 1.20134 1.86778 1.21461 1.47011 1.01108 0.90409 0.89463 1.26874 0.92267 0.94783 1.04480 1.70206 1.34926 1.11440 1.28513 0.85193 0.78833 0.79529 0.75863 1.18701 1.20180 1.17267 0.94716 0.89983 0.92417 0.92314 0.89665 0.92958 0.87634 0.82042 0.81335 0.82934 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.83 10.09 71.98 0.73 -4.11 16 2 C 0.12 4.24 5.77 86.38 0.50 4.74 16 3 N -0.64 -28.28 2.47 -831.26 -2.05 -30.33 16 4 C 0.16 6.24 5.35 85.64 0.46 6.70 16 5 C -0.14 -4.71 5.46 -19.82 -0.11 -4.82 16 6 C -0.05 -1.22 9.41 22.28 0.21 -1.01 16 7 C -0.11 -2.58 6.22 22.31 0.14 -2.44 16 8 Br -0.03 -0.52 33.70 -20.37 -0.69 -1.20 16 9 C -0.06 -1.29 9.79 22.28 0.22 -1.08 16 10 C -0.16 -4.70 10.03 22.31 0.22 -4.48 16 11 C 0.10 3.78 7.24 22.37 0.16 3.94 16 12 F -0.14 -6.96 14.21 44.97 0.64 -6.32 16 13 C 0.54 30.91 7.57 86.36 0.65 31.56 16 14 O -0.61 -40.00 12.11 -4.29 -0.05 -40.05 16 15 C -0.56 -31.73 8.27 24.83 0.21 -31.53 16 16 H 0.09 4.44 6.05 -2.91 -0.02 4.43 16 17 C 0.03 1.73 5.50 85.31 0.47 2.20 16 18 N -0.82 -50.90 11.83 21.84 0.26 -50.64 16 19 Si 0.99 41.62 29.56 68.60 2.03 43.64 16 20 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 21 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 23 H 0.03 1.29 7.70 -2.39 -0.02 1.27 16 24 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.06 2.21 6.40 -2.39 -0.02 2.20 16 27 H 0.09 2.32 8.03 -2.39 -0.02 2.30 16 28 H 0.05 2.40 7.02 -2.39 -0.02 2.38 16 29 H 0.11 3.10 7.99 -2.39 -0.02 3.08 16 30 H 0.16 3.26 8.04 -2.91 -0.02 3.24 16 31 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 32 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 33 H 0.27 15.33 8.29 -92.71 -0.77 14.56 16 Total: -1.00 -76.35 307.81 5.13 -71.23 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 1.14 Total: 14.01 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 3.85 Total: -0.33 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -1.79 Total: -80.97 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -0.05 Total: -40.05 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 0.64 Total: -6.32 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 35 Polarization: -0.52 SS G_CDS: -0.69 Total: -1.20 kcal Total: -76.35 5.13 -71.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274187758.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.056 kcal (2) G-P(sol) polarization free energy of solvation -76.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds