Wall clock time and date at job start Tue Mar 31 2020 15:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38414 * 119.89662 * 2 1 4 4 C 1.38227 * 120.35753 * 179.97438 * 3 2 1 5 5 C 1.38300 * 120.14553 * 359.72141 * 4 3 2 6 6 F 1.35101 * 120.10608 * 180.29588 * 5 4 3 7 7 C 1.39841 * 119.78619 * 0.57978 * 5 4 3 8 8 C 1.47639 * 120.17510 * 179.69944 * 7 5 4 9 9 O 1.21583 * 119.99851 * 269.72345 * 8 7 5 10 10 N 1.34777 * 120.00145 * 89.44863 * 8 7 5 11 11 C 1.46504 * 119.99854 * 180.27896 * 10 8 7 12 12 C 1.53004 * 109.46928 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.46843 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99981 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99570 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00351 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99771 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47191 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47055 * 119.99859 * 17 15 13 20 20 H 1.48498 * 109.47283 * 239.99935 * 17 15 13 21 21 C 1.37988 * 119.89784 * 180.02562 * 2 1 3 22 22 Br 1.89104 * 120.07149 * 0.02562 * 21 2 1 23 23 H 1.09003 * 109.47408 * 269.97856 * 1 2 3 24 24 H 1.09007 * 109.47091 * 29.97283 * 1 2 3 25 25 H 1.09001 * 109.47358 * 149.97469 * 1 2 3 26 26 H 1.08002 * 119.82095 * 359.97438 * 3 2 1 27 27 H 1.07995 * 119.93016 * 180.02562 * 4 3 2 28 28 H 0.97000 * 119.99736 * 0.27170 * 10 8 7 29 29 H 1.08998 * 109.46968 * 299.99782 * 11 10 8 30 30 H 1.08997 * 109.47198 * 59.99605 * 11 10 8 31 31 H 1.09007 * 109.46621 * 299.99773 * 12 11 10 32 32 H 1.08997 * 109.46991 * 59.99522 * 12 11 10 33 33 H 0.96996 * 120.00389 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1999 0.0000 4 6 3.5791 1.2111 0.0005 5 6 4.2833 0.0208 0.0069 6 9 5.6342 0.0326 0.0134 7 6 3.5924 -1.1951 0.0005 8 6 4.3355 -2.4708 0.0005 9 8 4.6419 -2.9959 -1.0525 10 7 4.6791 -3.0506 1.1677 11 6 5.4218 -4.3134 1.1676 12 6 5.6833 -4.7514 2.6101 13 6 6.4478 -6.0500 2.6100 14 1 6.7196 -6.5166 1.6746 15 6 6.8002 -6.6425 3.8040 16 7 6.4697 -6.0741 4.9430 17 14 7.7473 -8.2527 3.8040 18 1 7.9953 -8.6810 2.4039 19 1 9.0452 -8.0636 4.5005 20 1 6.9549 -9.2931 4.5074 21 6 2.1948 -1.1962 -0.0005 22 35 1.2484 -2.8334 -0.0020 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8903 -0.5134 25 1 -0.3634 -0.8898 -0.5142 26 1 1.6523 2.1326 -0.0004 27 1 4.1104 2.1513 0.0009 28 1 4.4347 -2.6317 2.0077 29 1 4.8379 -5.0782 0.6555 30 1 6.3722 -4.1760 0.6520 31 1 6.2673 -3.9863 3.1218 32 1 4.7330 -4.8887 3.1260 33 1 6.7180 -6.4907 5.7830 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278804607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:13 Heat of formation + Delta-G solvation = -67.564302 kcal Electronic energy + Delta-G solvation = -19429.688350 eV Core-core repulsion = 16029.625652 eV Total energy + Delta-G solvation = -3400.062698 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 329.017 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.12769 -40.08846 -38.58053 -34.89910 -33.21040 -32.96175 -32.44472 -30.16090 -29.33551 -26.94542 -25.27833 -23.68374 -22.19915 -21.00644 -20.21293 -17.92474 -17.18790 -17.11474 -16.42975 -15.94681 -15.25838 -14.87851 -14.62050 -14.46053 -14.34746 -14.17830 -13.84408 -13.44456 -12.95256 -12.46814 -12.38737 -12.31187 -12.24372 -11.67420 -11.20666 -11.06266 -11.03925 -10.63504 -10.34804 -10.30582 -9.97841 -9.53562 -9.22705 -9.20570 -8.85931 -8.58874 -8.37619 -6.08670 -4.11429 0.50199 0.63138 1.28660 2.72588 2.93984 3.29146 3.36292 3.40234 3.46914 3.88507 4.28316 4.41466 4.50749 4.61509 4.71337 5.02764 5.16927 5.27493 5.28576 5.38676 5.51267 5.62679 5.75915 5.88231 6.28336 6.33450 6.33907 6.71332 6.81747 7.51227 7.61898 7.86142 7.90577 8.26198 8.47514 8.94535 9.53404 11.02992 Molecular weight = 329.02amu Principal moments of inertia in cm(-1) A = 0.018114 B = 0.003743 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.359449 B = 7478.591333 C = 8344.814265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.070 4.070 3 C -0.076 4.076 4 C -0.136 4.136 5 C 0.131 3.869 6 F -0.122 7.122 7 C -0.123 4.123 8 C 0.553 3.447 9 O -0.525 6.525 10 N -0.704 5.704 11 C 0.122 3.878 12 C 0.012 3.988 13 C -0.520 4.520 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.896 3.104 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.043 4.043 22 Br -0.015 7.015 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.145 0.855 27 H 0.148 0.852 28 H 0.399 0.601 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.023 0.977 32 H 0.024 0.976 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.621 17.129 -8.665 24.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.072 4.072 3 C -0.095 4.095 4 C -0.155 4.155 5 C 0.110 3.890 6 F -0.100 7.100 7 C -0.129 4.129 8 C 0.335 3.665 9 O -0.402 6.402 10 N -0.352 5.352 11 C 0.000 4.000 12 C -0.025 4.025 13 C -0.559 4.559 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.124 4.124 22 Br 0.072 6.928 23 H 0.101 0.899 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.163 0.837 27 H 0.166 0.834 28 H 0.233 0.767 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.667 16.045 -9.225 23.615 hybrid contribution 0.959 -0.243 0.571 1.142 sum -13.707 15.802 -8.654 22.638 Atomic orbital electron populations 1.21010 0.89351 1.04085 1.03606 1.19811 0.97270 0.91016 0.99138 1.20986 0.92962 0.97702 0.97874 1.21220 0.94912 0.97150 1.02242 1.17530 0.77423 0.92773 1.01309 1.91585 1.27897 1.97186 1.93369 1.20088 0.93029 0.94516 1.05307 1.17814 0.79771 0.83623 0.85269 1.90808 1.54422 1.63856 1.31110 1.46286 1.56053 1.25667 1.07226 1.21826 0.94424 0.81924 1.01821 1.19337 0.97614 0.96937 0.88605 1.21075 1.35694 1.06380 0.92752 0.92150 1.24989 0.95962 0.97803 0.95490 1.69964 1.46617 1.39376 0.97306 0.86464 0.79587 0.83314 0.78256 1.19561 1.20933 1.20933 1.21614 0.92302 0.93129 1.05316 1.96823 1.73846 1.25015 1.97127 0.89935 0.90574 0.90228 0.83706 0.83429 0.76695 0.92125 0.92238 0.95864 0.95785 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.55 36.01 0.34 -0.51 16 2 C -0.07 -0.67 5.88 -104.65 -0.61 -1.28 16 3 C -0.08 -0.59 9.68 -39.52 -0.38 -0.98 16 4 C -0.14 -1.26 10.01 -39.56 -0.40 -1.66 16 5 C 0.13 1.73 7.29 -38.96 -0.28 1.45 16 6 F -0.12 -1.83 16.83 2.25 0.04 -1.80 16 7 C -0.12 -1.85 5.64 -104.89 -0.59 -2.45 16 8 C 0.55 10.30 5.77 -12.42 -0.07 10.23 16 9 O -0.53 -11.57 17.11 5.29 0.09 -11.48 16 10 N -0.70 -13.16 5.55 -61.31 -0.34 -13.50 16 11 C 0.12 2.66 5.61 -4.04 -0.02 2.63 16 12 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 13 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 14 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 17 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 C -0.04 -0.55 6.25 -39.10 -0.24 -0.80 16 22 Br -0.01 -0.20 30.71 -68.01 -2.09 -2.29 16 23 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.08 0.36 8.08 -51.93 -0.42 -0.06 16 25 H 0.08 0.60 6.63 -51.93 -0.34 0.25 16 26 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 27 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 28 H 0.40 6.69 8.46 -40.82 -0.35 6.35 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 315.73 15.07 4.76 4.76 Total: -1.00 -32.43 315.73 -8.25 -40.68 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -3.61 Total: -0.92 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.82 Total: -6.45 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.40 Total: -39.00 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -2.09 Total: -2.29 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.43 -8.25 -40.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278804607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.880 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds