Wall clock time and date at job start Tue Mar 31 2020 15:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33388 * 125.19741 * 2 1 4 4 C 1.38469 * 114.91291 * 180.24550 * 3 2 1 5 5 Br 1.89098 * 122.54997 * 179.72583 * 4 3 2 6 6 C 1.33433 * 114.90543 * 359.49491 * 4 3 2 7 7 C 1.50694 * 125.20741 * 180.24196 * 6 4 3 8 8 N 1.46898 * 109.47014 * 90.28831 * 7 6 4 9 9 C 1.46900 * 111.00065 * 174.93220 * 8 7 6 10 10 C 1.52996 * 109.47316 * 185.09631 * 9 8 7 11 11 C 1.50702 * 115.55242 * 65.13185 * 10 9 8 12 12 H 1.07994 * 120.00338 * 264.82208 * 11 10 9 13 13 C 1.37883 * 120.00019 * 84.81742 * 11 10 9 14 14 N 1.31506 * 120.00255 * 184.66997 * 13 11 10 15 15 Si 1.86801 * 119.99602 * 4.67115 * 13 11 10 16 16 H 1.48502 * 109.47282 * 94.52155 * 15 13 11 17 17 H 1.48500 * 109.47070 * 214.52172 * 15 13 11 18 18 H 1.48504 * 109.47310 * 334.51980 * 15 13 11 19 19 C 1.52998 * 117.50051 * 279.46410 * 10 9 8 20 20 C 1.53004 * 117.50010 * 210.80422 * 10 9 8 21 21 S 1.75876 * 125.19346 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.47072 * 89.99846 * 1 2 3 23 23 H 1.08996 * 109.47389 * 210.00063 * 1 2 3 24 24 H 1.08999 * 109.46866 * 330.00172 * 1 2 3 25 25 H 1.08000 * 122.54639 * 359.97438 * 3 2 1 26 26 H 1.08999 * 109.47708 * 210.29280 * 7 6 4 27 27 H 1.09003 * 109.47103 * 330.29503 * 7 6 4 28 28 H 1.00891 * 111.00700 * 298.89117 * 8 7 6 29 29 H 1.09005 * 109.47426 * 305.09413 * 9 8 7 30 30 H 1.09002 * 109.47197 * 65.09433 * 9 8 7 31 31 H 0.97001 * 120.00480 * 179.97438 * 14 13 11 32 32 H 1.08999 * 117.49746 * 0.02562 * 19 10 9 33 33 H 1.08997 * 117.50484 * 145.01793 * 19 10 9 34 34 H 1.08999 * 117.50022 * 214.97840 * 20 10 9 35 35 H 1.08995 * 117.49886 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6383 0.8428 -0.0054 5 35 4.9240 2.2295 -0.0141 6 6 3.9752 -0.4483 0.0009 7 6 5.3859 -0.9781 0.0022 8 7 5.8432 -1.1497 1.3877 9 6 7.1706 -1.7776 1.4300 10 6 7.5573 -2.0553 2.8840 11 6 6.7001 -3.0648 3.6031 12 1 5.8717 -2.7339 4.2119 13 6 6.9733 -4.4110 3.4838 14 7 6.1721 -5.2960 4.0354 15 14 8.4816 -4.9777 2.5387 16 1 9.6090 -5.1839 3.4830 17 1 8.1790 -6.2541 1.8427 18 1 8.8559 -3.9455 1.5388 19 6 8.1113 -0.8878 3.7030 20 6 9.0445 -2.0096 3.2406 21 16 2.5207 -1.4373 0.0006 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.8669 2.0895 -0.0004 26 1 5.4137 -1.9392 -0.5112 27 1 6.0394 -0.2729 -0.5113 28 1 5.8440 -0.2690 1.8799 29 1 7.1468 -2.7155 0.8749 30 1 7.9038 -1.1079 0.9805 31 1 6.3641 -6.2431 3.9512 32 1 8.1999 0.0783 3.2061 33 1 7.8561 -0.8500 4.7620 34 1 9.4028 -2.7094 3.9955 35 1 9.7474 -1.7821 2.4392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453592925.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:37 Heat of formation + Delta-G solvation = 59.691079 kcal Electronic energy + Delta-G solvation = -17684.534627 eV Core-core repulsion = 14856.203313 eV Total energy + Delta-G solvation = -2828.331315 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 329.014 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.38922 -37.32112 -34.85594 -32.32820 -31.94187 -30.25850 -28.44479 -25.92018 -24.58846 -23.07448 -22.27045 -21.50903 -18.98029 -18.56429 -17.30048 -16.24614 -15.35162 -15.09864 -14.62271 -14.34541 -13.95075 -13.81762 -13.33365 -13.08063 -12.92120 -12.61863 -12.50599 -12.28522 -11.68109 -11.60234 -11.40760 -11.01366 -10.75766 -10.60633 -10.56325 -10.42832 -10.19472 -10.06473 -9.46564 -9.01865 -8.58055 -8.49304 -8.34516 -8.29014 -7.74060 -5.97588 -3.96308 0.86704 1.21206 1.75029 2.36585 2.43458 3.34090 3.43803 3.47992 4.51730 4.54867 4.74747 4.96107 5.14401 5.17424 5.21551 5.30411 5.36861 5.58334 5.67229 5.76963 5.87008 5.92388 6.02926 6.06578 6.19066 6.22061 6.28645 6.45102 6.50864 6.76113 7.09771 7.20614 7.65108 7.82348 7.99387 8.65926 9.08713 9.66015 11.15033 Molecular weight = 329.01amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.004579 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.952265 B = 6113.538156 C = 7423.578424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.192 4.192 3 C -0.122 4.122 4 C -0.110 4.110 5 Br -0.039 7.039 6 C -0.129 4.129 7 C 0.117 3.883 8 N -0.656 5.656 9 C 0.102 3.898 10 C 0.010 3.990 11 C -0.460 4.460 12 H 0.078 0.922 13 C 0.074 3.926 14 N -0.902 5.902 15 Si 0.875 3.125 16 H -0.283 1.283 17 H -0.296 1.296 18 H -0.259 1.259 19 C -0.184 4.184 20 C -0.201 4.201 21 S 0.180 5.820 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.142 0.858 26 H 0.084 0.916 27 H 0.049 0.951 28 H 0.339 0.661 29 H 0.068 0.932 30 H 0.005 0.995 31 H 0.261 0.739 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.376 14.431 -11.885 20.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.310 4.310 3 C -0.153 4.153 4 C -0.202 4.202 5 Br 0.044 6.956 6 C -0.250 4.250 7 C -0.013 4.013 8 N -0.287 5.287 9 C -0.027 4.027 10 C 0.009 3.991 11 C -0.498 4.498 12 H 0.096 0.904 13 C -0.127 4.127 14 N -0.540 5.540 15 Si 0.704 3.296 16 H -0.209 1.209 17 H -0.223 1.223 18 H -0.183 1.183 19 C -0.221 4.221 20 C -0.239 4.239 21 S 0.444 5.556 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.094 0.906 25 H 0.160 0.840 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.157 0.843 29 H 0.086 0.914 30 H 0.023 0.977 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.564 12.570 -11.776 18.813 hybrid contribution 1.460 1.523 -0.677 2.216 sum -6.104 14.093 -12.453 19.772 Atomic orbital electron populations 1.20308 0.87512 1.03347 1.02630 1.24517 1.00293 0.96386 1.09829 1.19708 0.90655 0.99797 1.05128 1.20558 0.93919 0.92099 1.13645 1.96641 1.54352 1.46609 1.97959 1.24506 1.00590 0.94791 1.05102 1.20496 0.87703 1.00246 0.92888 1.60218 1.28746 1.29379 1.10343 1.21720 0.86366 0.96982 0.97628 1.19404 0.91240 0.97059 0.91441 1.20146 1.13188 0.88563 1.27892 0.90446 1.24931 0.96173 0.96585 0.95026 1.69904 1.37174 1.01329 1.45588 0.86919 0.83892 0.77824 0.80988 1.20900 1.22335 1.18280 1.22808 1.06415 0.92300 1.00596 1.22987 0.94817 1.02956 1.03147 1.84601 0.93926 1.07024 1.70003 0.90799 0.91038 0.90566 0.84049 0.89774 0.93347 0.84270 0.91374 0.97679 0.92898 0.91415 0.89599 0.89538 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.38 36.01 0.37 -0.30 16 2 C -0.19 -2.26 6.51 -36.00 -0.23 -2.49 16 3 C -0.12 -1.50 9.91 -41.19 -0.41 -1.91 16 4 C -0.11 -1.51 6.17 -41.18 -0.25 -1.76 16 5 Br -0.04 -0.50 32.70 -68.01 -2.22 -2.72 16 6 C -0.13 -1.92 6.07 -35.99 -0.22 -2.14 16 7 C 0.12 1.87 5.83 -4.98 -0.03 1.84 16 8 N -0.66 -12.44 6.34 -115.06 -0.73 -13.17 16 9 C 0.10 2.09 5.12 -3.83 -0.02 2.07 16 10 C 0.01 0.23 0.97 -155.66 -0.15 0.07 16 11 C -0.46 -12.76 9.33 -34.44 -0.32 -13.08 16 12 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 13 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 14 N -0.90 -27.59 13.96 55.43 0.77 -26.81 16 15 Si 0.88 21.65 24.94 -169.99 -4.24 17.41 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 17 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 18 H -0.26 -5.99 5.69 56.52 0.32 -5.66 16 19 C -0.18 -3.73 9.96 -26.69 -0.27 -4.00 16 20 C -0.20 -4.27 7.31 -26.69 -0.20 -4.47 16 21 S 0.18 2.48 23.31 -107.50 -2.51 -0.02 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 26 H 0.08 1.33 8.09 -51.93 -0.42 0.91 16 27 H 0.05 0.72 7.30 -51.93 -0.38 0.34 16 28 H 0.34 6.25 8.83 -39.30 -0.35 5.90 16 29 H 0.07 1.48 7.01 -51.93 -0.36 1.11 16 30 H 0.01 0.10 8.09 -51.93 -0.42 -0.32 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 34 H 0.09 1.93 7.13 -51.93 -0.37 1.56 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 323.90 15.07 4.88 4.88 Total: -1.00 -29.88 323.90 -10.76 -40.64 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -4.90 Total: 3.95 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -1.82 Total: -24.16 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.04 Total: -39.98 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.24 Total: 17.41 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.51 Total: -0.02 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.22 Total: -2.72 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.88 -10.76 -40.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453592925.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.334 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds