Wall clock time and date at job start Tue Mar 31 2020 15:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33388 * 125.19741 * 2 1 4 4 C 1.38469 * 114.91291 * 180.24550 * 3 2 1 5 5 Br 1.89098 * 122.54997 * 179.72583 * 4 3 2 6 6 C 1.33433 * 114.90543 * 359.49491 * 4 3 2 7 7 C 1.50694 * 125.20741 * 180.24196 * 6 4 3 8 8 N 1.46898 * 109.47014 * 90.28831 * 7 6 4 9 9 C 1.46900 * 111.00065 * 174.93220 * 8 7 6 10 10 C 1.52996 * 109.47316 * 185.09631 * 9 8 7 11 11 C 1.50702 * 115.55242 * 65.13185 * 10 9 8 12 12 H 1.07994 * 120.00338 * 264.82208 * 11 10 9 13 13 C 1.37883 * 120.00019 * 84.81742 * 11 10 9 14 14 N 1.31506 * 120.00255 * 184.66997 * 13 11 10 15 15 Si 1.86801 * 119.99602 * 4.67115 * 13 11 10 16 16 H 1.48502 * 109.47282 * 94.52155 * 15 13 11 17 17 H 1.48500 * 109.47070 * 214.52172 * 15 13 11 18 18 H 1.48504 * 109.47310 * 334.51980 * 15 13 11 19 19 C 1.52998 * 117.50051 * 279.46410 * 10 9 8 20 20 C 1.53004 * 117.50010 * 210.80422 * 10 9 8 21 21 S 1.75876 * 125.19346 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.47072 * 89.99846 * 1 2 3 23 23 H 1.08996 * 109.47389 * 210.00063 * 1 2 3 24 24 H 1.08999 * 109.46866 * 330.00172 * 1 2 3 25 25 H 1.08000 * 122.54639 * 359.97438 * 3 2 1 26 26 H 1.08999 * 109.47708 * 210.29280 * 7 6 4 27 27 H 1.09003 * 109.47103 * 330.29503 * 7 6 4 28 28 H 1.00891 * 111.00700 * 298.89117 * 8 7 6 29 29 H 1.09005 * 109.47426 * 305.09413 * 9 8 7 30 30 H 1.09002 * 109.47197 * 65.09433 * 9 8 7 31 31 H 0.97001 * 120.00480 * 179.97438 * 14 13 11 32 32 H 1.08999 * 117.49746 * 0.02562 * 19 10 9 33 33 H 1.08997 * 117.50484 * 145.01793 * 19 10 9 34 34 H 1.08999 * 117.50022 * 214.97840 * 20 10 9 35 35 H 1.08995 * 117.49886 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6383 0.8428 -0.0054 5 35 4.9240 2.2295 -0.0141 6 6 3.9752 -0.4483 0.0009 7 6 5.3859 -0.9781 0.0022 8 7 5.8432 -1.1497 1.3877 9 6 7.1706 -1.7776 1.4300 10 6 7.5573 -2.0553 2.8840 11 6 6.7001 -3.0648 3.6031 12 1 5.8717 -2.7339 4.2119 13 6 6.9733 -4.4110 3.4838 14 7 6.1721 -5.2960 4.0354 15 14 8.4816 -4.9777 2.5387 16 1 9.6090 -5.1839 3.4830 17 1 8.1790 -6.2541 1.8427 18 1 8.8559 -3.9455 1.5388 19 6 8.1113 -0.8878 3.7030 20 6 9.0445 -2.0096 3.2406 21 16 2.5207 -1.4373 0.0006 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.8669 2.0895 -0.0004 26 1 5.4137 -1.9392 -0.5112 27 1 6.0394 -0.2729 -0.5113 28 1 5.8440 -0.2690 1.8799 29 1 7.1468 -2.7155 0.8749 30 1 7.9038 -1.1079 0.9805 31 1 6.3641 -6.2431 3.9512 32 1 8.1999 0.0783 3.2061 33 1 7.8561 -0.8500 4.7620 34 1 9.4028 -2.7094 3.9955 35 1 9.7474 -1.7821 2.4392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453592925.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:37 Heat of formation + Delta-G solvation = 41.560123 kcal Electronic energy + Delta-G solvation = -17685.320845 eV Core-core repulsion = 14856.203313 eV Total energy + Delta-G solvation = -2829.117532 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 329.014 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.52777 -38.87993 -36.22142 -34.12729 -33.33284 -31.30529 -29.56696 -27.82771 -26.05804 -24.33521 -23.40487 -23.09185 -20.79277 -19.63746 -18.62179 -17.97931 -16.95849 -16.35244 -16.06059 -15.82010 -15.37999 -14.82847 -14.82217 -14.61182 -14.15419 -14.00812 -13.54125 -13.50586 -13.17839 -13.00865 -12.70875 -12.56359 -12.40280 -12.12653 -11.90405 -11.74802 -11.55696 -11.40129 -11.20806 -10.93936 -10.48939 -10.23512 -9.55905 -9.36711 -9.14603 -8.18118 -6.20655 -0.17119 0.15933 0.76342 1.31406 1.38392 1.41138 1.44292 1.53812 2.44157 3.07770 3.17755 3.53277 3.74261 3.97436 4.08436 4.22441 4.39062 4.45968 4.46981 4.49714 4.60473 4.65458 4.76345 4.81971 4.86261 4.88060 5.06814 5.10636 5.11645 5.36349 5.43193 5.54364 5.79749 6.19240 6.42215 6.57343 6.85352 7.45170 8.98521 Molecular weight = 329.01amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.004579 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.952265 B = 6113.538156 C = 7423.578424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.173 4.173 3 C -0.135 4.135 4 C -0.105 4.105 5 Br -0.028 7.028 6 C -0.155 4.155 7 C 0.124 3.876 8 N -0.676 5.676 9 C 0.110 3.890 10 C -0.019 4.019 11 C -0.454 4.454 12 H 0.025 0.975 13 C 0.014 3.986 14 N -0.956 5.956 15 Si 0.937 3.063 16 H -0.277 1.277 17 H -0.302 1.302 18 H -0.228 1.228 19 C -0.166 4.166 20 C -0.194 4.194 21 S 0.140 5.860 22 H 0.093 0.907 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.164 0.836 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.341 0.659 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.261 0.739 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.544 16.576 -13.566 22.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.291 4.291 3 C -0.165 4.165 4 C -0.199 4.199 5 Br 0.055 6.945 6 C -0.275 4.275 7 C -0.006 4.006 8 N -0.307 5.307 9 C -0.019 4.019 10 C -0.020 4.020 11 C -0.492 4.492 12 H 0.043 0.957 13 C -0.181 4.181 14 N -0.597 5.597 15 Si 0.762 3.238 16 H -0.203 1.203 17 H -0.230 1.230 18 H -0.150 1.150 19 C -0.203 4.203 20 C -0.232 4.232 21 S 0.404 5.596 22 H 0.111 0.889 23 H 0.092 0.908 24 H 0.113 0.887 25 H 0.182 0.818 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.159 0.841 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.722 14.754 -13.465 21.076 hybrid contribution 1.060 0.962 -0.084 1.434 sum -5.662 15.716 -13.549 21.509 Atomic orbital electron populations 1.20480 0.85018 1.04334 1.04159 1.24925 1.01672 0.94785 1.07759 1.19969 0.90080 1.00952 1.05505 1.20809 0.94925 0.91969 1.12156 1.96642 1.54145 1.45824 1.97867 1.24400 1.00166 0.95351 1.07618 1.20419 0.88628 1.00429 0.91163 1.60121 1.28300 1.29728 1.12544 1.21496 0.87826 0.97124 0.95436 1.19329 0.91950 0.97734 0.92960 1.20262 1.12112 0.89901 1.26923 0.95662 1.25769 0.99315 0.96712 0.96333 1.70070 1.39723 1.01641 1.48247 0.85919 0.79933 0.77648 0.80250 1.20338 1.23009 1.15011 1.22823 1.04525 0.93114 0.99885 1.23029 0.93927 1.02731 1.03497 1.84712 0.95011 1.09030 1.70821 0.88891 0.90823 0.88728 0.81821 0.90381 0.91920 0.84059 0.92961 0.94779 0.93070 0.88102 0.90790 0.90955 0.88134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.38 71.24 0.74 -0.44 16 2 C -0.17 -3.79 6.51 24.59 0.16 -3.63 16 3 C -0.14 -3.04 9.91 21.23 0.21 -2.83 16 4 C -0.11 -2.74 6.17 21.24 0.13 -2.61 16 5 Br -0.03 -0.66 32.70 -20.37 -0.67 -1.33 16 6 C -0.15 -4.51 6.07 24.60 0.15 -4.36 16 7 C 0.12 3.82 5.83 85.56 0.50 4.32 16 8 N -0.68 -25.08 6.34 -517.94 -3.28 -28.37 16 9 C 0.11 4.29 5.12 86.30 0.44 4.74 16 10 C -0.02 -0.83 0.97 -52.93 -0.05 -0.88 16 11 C -0.45 -25.85 9.33 25.60 0.24 -25.61 16 12 H 0.03 1.65 8.06 -2.91 -0.02 1.63 16 13 C 0.01 0.84 5.47 84.66 0.46 1.31 16 14 N -0.96 -60.90 13.96 21.45 0.30 -60.60 16 15 Si 0.94 44.67 24.94 68.60 1.71 46.38 16 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 17 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 18 H -0.23 -9.62 5.69 99.48 0.57 -9.05 16 19 C -0.17 -6.36 9.96 30.62 0.30 -6.05 16 20 C -0.19 -7.65 7.31 30.62 0.22 -7.43 16 21 S 0.14 3.87 23.31 -56.49 -1.32 2.55 16 22 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 26 H 0.08 2.46 8.09 -2.39 -0.02 2.44 16 27 H 0.06 1.73 7.30 -2.39 -0.02 1.71 16 28 H 0.34 12.17 8.83 -89.70 -0.79 11.38 16 29 H 0.05 2.18 7.01 -2.38 -0.02 2.16 16 30 H 0.03 1.14 8.09 -2.39 -0.02 1.12 16 31 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 32 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 33 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 34 H 0.07 3.06 7.13 -2.39 -0.02 3.05 16 35 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -66.54 323.90 0.42 -66.13 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.16 Total: 18.71 kcal Atomic # 6 Polarization: -46.99 SS G_CDS: 3.51 Total: -43.48 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -2.98 Total: -88.96 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.71 Total: 46.38 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -1.32 Total: 2.55 kcal Atomic # 35 Polarization: -0.66 SS G_CDS: -0.67 Total: -1.33 kcal Total: -66.54 0.42 -66.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453592925.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.686 kcal (2) G-P(sol) polarization free energy of solvation -66.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds