Wall clock time and date at job start Tue Mar 31 2020 15:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99961 * 2 1 4 4 H 1.48495 * 109.46707 * 239.99443 * 3 2 1 5 5 H 1.48498 * 109.46774 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47123 * 119.99708 * 3 2 1 7 7 C 1.37872 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00129 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00233 * 0.02562 * 7 2 1 10 10 H 1.09010 * 109.46910 * 299.99378 * 9 7 2 11 11 C 1.52998 * 109.47595 * 59.99143 * 9 7 2 12 12 Cl 1.80299 * 109.47689 * 185.00488 * 11 9 7 13 13 O 1.42902 * 109.47616 * 179.97438 * 9 7 2 14 14 C 1.35735 * 117.00062 * 145.76441 * 13 9 7 15 15 C 1.39217 * 120.84355 * 356.61959 * 14 13 9 16 16 C 1.38121 * 119.08429 * 180.02562 * 15 14 13 17 17 Cl 1.73601 * 119.60357 * 180.02562 * 16 15 14 18 18 N 1.32065 * 120.78993 * 359.97438 * 16 15 14 19 19 C 1.31971 * 121.84737 * 359.73203 * 18 16 15 20 20 C 1.50698 * 119.58599 * 180.28958 * 19 18 16 21 21 F 1.39899 * 109.47205 * 270.24526 * 20 19 18 22 22 F 1.39901 * 109.46757 * 30.24251 * 20 19 18 23 23 F 1.39898 * 109.47310 * 150.23911 * 20 19 18 24 24 C 1.37957 * 120.83352 * 0.53191 * 19 18 16 25 25 H 0.96996 * 120.00075 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46996 * 305.00832 * 11 9 7 27 27 H 1.09005 * 109.47083 * 65.00058 * 11 9 7 28 28 H 1.08002 * 120.45789 * 0.04223 * 15 14 13 29 29 H 1.08003 * 120.43639 * 179.75376 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8904 11 6 0.3718 -2.5805 -1.2489 12 17 -0.6388 -4.0719 -1.1767 13 8 2.1797 -3.5853 0.0005 14 6 1.8201 -4.7034 0.6809 15 6 0.6299 -4.7485 1.4018 16 6 0.3000 -5.9048 2.0814 17 17 -1.1812 -5.9761 2.9840 18 7 1.0974 -6.9572 2.0519 19 6 2.2303 -6.9537 1.3751 20 6 3.0985 -8.1854 1.3713 21 9 3.9992 -8.1245 2.4400 22 9 2.2947 -9.3228 1.5031 23 9 3.8075 -8.2525 0.1671 24 6 2.6324 -5.8349 0.6752 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2757 -1.7048 -1.2952 27 1 1.0037 -2.6124 -2.1365 28 1 -0.0265 -3.8913 1.4290 29 1 3.5628 -5.8377 0.1267 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233808086.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:36 Heat of formation + Delta-G solvation = -172.655364 kcal Electronic energy + Delta-G solvation = -23532.181413 eV Core-core repulsion = 19092.635851 eV Total energy + Delta-G solvation = -4439.545562 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 328.994 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.16392 -47.70230 -47.60293 -40.61111 -38.25368 -36.59405 -35.15566 -33.79503 -31.92147 -31.55125 -29.57402 -26.66289 -25.57857 -23.53732 -23.07769 -21.14023 -18.92807 -18.55318 -18.51378 -17.33753 -17.24890 -15.99413 -15.72007 -15.45918 -15.13404 -14.67202 -14.50228 -14.40240 -14.06656 -13.91558 -13.78167 -13.76900 -13.68251 -13.43237 -12.73664 -12.42372 -12.22991 -11.83635 -11.53782 -11.37799 -11.26292 -11.22528 -10.99965 -10.50104 -10.18146 -9.87801 -9.74050 -9.56158 -9.11425 -8.91593 -8.39466 -6.64100 -4.74124 0.67938 1.23172 1.73446 2.48177 3.00269 3.09167 3.10957 3.15512 3.39531 3.44393 3.57968 3.99612 4.20815 4.38066 4.71860 4.74482 4.89357 5.03562 5.24645 5.52123 5.83496 5.91540 5.96641 6.27232 6.46050 6.84837 7.28174 7.46835 7.48534 7.78399 8.38224 8.94996 10.42871 Molecular weight = 328.99amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.004229 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.462553 B = 6619.691360 C = 7344.996359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.530 4.530 8 H 0.080 0.920 9 C 0.202 3.798 10 H 0.055 0.945 11 C -0.039 4.039 12 Cl -0.239 7.239 13 O -0.289 6.289 14 C 0.214 3.786 15 C -0.201 4.201 16 C 0.211 3.789 17 Cl -0.022 7.022 18 N -0.478 5.478 19 C 0.079 3.921 20 C 0.530 3.470 21 F -0.170 7.170 22 F -0.164 7.164 23 F -0.169 7.169 24 C -0.168 4.168 25 H 0.276 0.724 26 H 0.139 0.861 27 H 0.080 0.920 28 H 0.168 0.832 29 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.974 -9.090 1.541 9.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.567 4.567 8 H 0.098 0.902 9 C 0.148 3.852 10 H 0.073 0.927 11 C -0.101 4.101 12 Cl -0.214 7.214 13 O -0.198 6.198 14 C 0.157 3.843 15 C -0.222 4.222 16 C 0.047 3.953 17 Cl 0.007 6.993 18 N -0.194 5.194 19 C -0.060 4.060 20 C 0.475 3.525 21 F -0.152 7.152 22 F -0.145 7.145 23 F -0.151 7.151 24 C -0.190 4.190 25 H 0.086 0.914 26 H 0.157 0.843 27 H 0.098 0.902 28 H 0.185 0.815 29 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.557 -9.729 1.936 10.041 hybrid contribution 0.239 1.389 -0.359 1.455 sum 1.796 -8.340 1.577 8.676 Atomic orbital electron populations 1.69760 1.06039 1.28682 1.47669 1.24985 0.95243 0.99976 0.93501 0.86164 0.79318 0.80600 0.79327 1.19583 1.20694 1.19562 1.20921 0.94457 0.87395 1.53930 0.90224 1.20818 0.87332 0.82473 0.94585 0.92727 1.25825 0.95477 0.87117 1.01726 1.98658 1.75808 1.47915 1.98979 1.86216 1.46957 1.21456 1.65205 1.19066 0.90139 0.87785 0.87338 1.22350 0.99447 1.00275 1.00176 1.21018 0.89872 0.89718 0.94681 1.98404 1.29712 1.98335 1.72875 1.66352 1.03714 1.29370 1.19988 1.20232 0.93558 0.93321 0.98874 1.17686 0.78188 0.82768 0.73871 1.93235 1.68981 1.96454 1.56490 1.93228 1.73077 1.52745 1.95470 1.93216 1.79544 1.96521 1.45770 1.21055 1.03022 0.91119 1.03823 0.91380 0.84302 0.90165 0.81470 0.82518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.21 11.29 55.43 0.63 -20.58 15 2 C 0.07 1.58 5.29 -17.82 -0.09 1.48 15 3 Si 0.92 18.50 29.54 -169.99 -5.02 13.48 15 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 15 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 7 C -0.53 -12.51 8.89 -34.44 -0.31 -12.81 15 8 H 0.08 1.89 7.81 -52.49 -0.41 1.48 15 9 C 0.20 4.36 2.19 -27.89 -0.06 4.30 15 10 H 0.06 1.23 5.40 -51.92 -0.28 0.95 15 11 C -0.04 -0.79 6.17 37.16 0.23 -0.56 15 12 Cl -0.24 -4.49 25.85 -51.86 -1.34 -5.83 15 13 O -0.29 -5.82 9.74 -18.91 -0.18 -6.00 15 14 C 0.21 3.85 6.01 -38.83 -0.23 3.61 15 15 C -0.20 -3.55 7.01 -39.26 -0.28 -3.83 15 16 C 0.21 3.55 7.27 -17.49 -0.13 3.42 15 17 Cl -0.02 -0.33 29.10 -51.86 -1.51 -1.84 15 18 N -0.48 -8.10 9.94 -6.69 -0.07 -8.16 15 19 C 0.08 1.24 6.29 -82.64 -0.52 0.72 15 20 C 0.53 7.39 3.43 36.00 0.12 7.52 15 21 F -0.17 -2.33 17.30 2.25 0.04 -2.29 15 22 F -0.16 -2.36 17.04 2.25 0.04 -2.33 15 23 F -0.17 -2.19 16.44 2.25 0.04 -2.16 15 24 C -0.17 -2.66 9.39 -39.29 -0.37 -3.03 15 25 H 0.28 6.32 8.31 -40.82 -0.34 5.98 15 26 H 0.14 3.07 5.95 -51.93 -0.31 2.76 15 27 H 0.08 1.59 8.14 -51.93 -0.42 1.17 15 28 H 0.17 3.08 5.32 -52.49 -0.28 2.80 15 29 H 0.16 2.14 7.59 -52.48 -0.40 1.74 15 LS Contribution 298.04 15.07 4.49 4.49 Total: -1.00 -23.06 298.04 -5.76 -28.81 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -1.23 Total: 1.58 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -1.63 Total: 0.83 kcal Atomic # 7 Polarization: -29.30 SS G_CDS: 0.56 Total: -28.74 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.18 Total: -6.00 kcal Atomic # 9 Polarization: -6.89 SS G_CDS: 0.11 Total: -6.77 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.48 kcal Atomic # 17 Polarization: -4.82 SS G_CDS: -2.85 Total: -7.67 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -23.06 -5.76 -28.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233808086.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.842 kcal (2) G-P(sol) polarization free energy of solvation -23.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds