Wall clock time and date at job start Tue Mar 31 2020 15:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99901 * 2 1 4 4 H 1.48502 * 109.47050 * 239.99350 * 3 2 1 5 5 H 1.48492 * 109.47289 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47045 * 119.99786 * 3 2 1 7 7 C 1.37879 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00030 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00189 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47661 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47841 * 180.02562 * 10 9 7 12 12 S 1.65591 * 120.00433 * 163.16974 * 11 10 9 13 13 O 1.42099 * 106.40490 * 177.09320 * 12 11 10 14 14 O 1.42102 * 106.40489 * 310.01529 * 12 11 10 15 15 C 1.76203 * 107.21883 * 63.55419 * 12 11 10 16 16 C 1.34224 * 126.57086 * 244.09018 * 15 12 11 17 17 N 1.36936 * 109.89816 * 179.97438 * 16 15 12 18 18 H 0.96996 * 124.98730 * 179.97438 * 17 16 15 19 19 C 1.37409 * 110.02274 * 359.97438 * 17 16 15 20 20 N 1.32693 * 133.17469 * 179.97438 * 19 17 16 21 21 C 1.31607 * 121.70462 * 180.02562 * 20 19 17 22 22 C 1.38602 * 121.59172 * 0.02562 * 21 20 19 23 23 C 1.38357 * 119.39680 * 359.97438 * 22 21 20 24 24 Cl 1.73602 * 120.99281 * 180.02562 * 23 22 21 25 25 C 1.39819 * 118.01463 * 359.70772 * 23 22 21 26 26 H 0.96996 * 119.99807 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46993 * 60.00097 * 9 7 2 28 28 H 1.08997 * 109.47323 * 300.00310 * 9 7 2 29 29 H 1.09008 * 109.46995 * 60.00203 * 10 9 7 30 30 H 1.08997 * 109.47263 * 300.00662 * 10 9 7 31 31 H 0.97002 * 119.99353 * 343.17502 * 11 10 9 32 32 H 1.08007 * 125.04961 * 359.97438 * 16 15 12 33 33 H 1.08002 * 119.20184 * 179.97438 * 21 20 19 34 34 H 1.08004 * 120.30039 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5129 -4.9308 -0.0001 12 16 2.2878 -6.3341 -0.4154 13 8 1.3391 -7.3795 -0.2534 14 8 2.9570 -6.0751 -1.6420 15 6 3.5445 -6.6118 0.7880 16 6 4.8692 -6.6267 0.5721 17 7 5.5299 -6.8734 1.7459 18 1 6.4936 -6.9315 1.8401 19 6 4.6274 -7.0265 2.7706 20 7 4.7596 -7.2744 4.0675 21 6 3.7154 -7.3790 4.8617 22 6 2.4224 -7.2359 4.3835 23 6 2.2200 -6.9763 3.0397 24 17 0.6184 -6.7890 2.3967 25 6 3.3443 -6.8627 2.2162 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8902 29 1 2.8720 -3.6044 0.8906 30 1 2.8720 -3.6043 -0.8894 31 1 0.5739 -4.9488 0.2428 32 1 5.3435 -6.4677 -0.3851 33 1 3.8698 -7.5820 5.9111 34 1 1.5804 -7.3263 5.0539 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344129321.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:16 Heat of formation + Delta-G solvation = -12.644838 kcal Electronic energy + Delta-G solvation = -23458.937616 eV Core-core repulsion = 19738.356923 eV Total energy + Delta-G solvation = -3720.580693 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 329.039 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.93871 -38.35132 -36.87949 -36.68680 -35.50841 -35.31917 -33.03351 -32.70667 -30.61946 -29.71153 -29.07765 -24.45682 -24.11042 -23.17076 -22.29868 -21.08235 -19.15114 -18.75534 -17.40415 -17.15766 -16.62699 -16.25408 -16.02378 -15.57719 -15.36638 -15.11997 -14.52093 -14.20336 -13.98265 -13.70208 -13.59526 -13.08887 -12.81897 -12.51000 -12.27912 -11.81052 -11.77320 -11.69754 -11.33248 -11.27684 -11.07351 -10.92038 -10.61858 -10.45870 -10.33125 -9.87779 -9.55597 -9.27011 -8.95368 -8.86770 -8.68845 -8.38808 -6.06328 -4.09609 0.39816 0.78314 0.91615 1.79750 1.85495 2.28220 3.30551 3.34962 3.35972 3.39206 3.46677 3.96821 4.09288 4.18677 4.41867 4.46895 4.54445 4.81247 4.91057 5.05746 5.29447 5.30358 5.60507 5.66045 5.82455 5.85169 6.24538 6.31731 6.52870 6.76164 6.77760 7.47758 7.55209 7.59226 7.69407 7.92725 8.30503 8.95937 9.54598 11.05069 Molecular weight = 329.04amu Principal moments of inertia in cm(-1) A = 0.013148 B = 0.004139 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.016020 B = 6763.117868 C = 7033.863284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.019 3.981 10 C 0.122 3.878 11 N -1.107 6.107 12 S 2.713 3.287 13 O -0.959 6.959 14 O -0.967 6.967 15 C -0.737 4.737 16 C 0.210 3.790 17 N -0.568 5.568 18 H 0.428 0.572 19 C 0.295 3.705 20 N -0.489 5.489 21 C 0.147 3.853 22 C -0.180 4.180 23 C 0.043 3.957 24 Cl -0.023 7.023 25 C -0.079 4.079 26 H 0.262 0.738 27 H 0.026 0.974 28 H 0.024 0.976 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.415 0.585 32 H 0.205 0.795 33 H 0.174 0.826 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.501 -16.576 7.626 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.563 4.563 8 H 0.076 0.924 9 C -0.020 4.020 10 C -0.003 4.003 11 N -0.869 5.869 12 S 2.799 3.201 13 O -0.949 6.949 14 O -0.957 6.957 15 C -0.830 4.830 16 C 0.075 3.925 17 N -0.172 5.172 18 H 0.268 0.732 19 C 0.062 3.938 20 N -0.202 5.202 21 C -0.018 4.018 22 C -0.202 4.202 23 C 0.007 3.993 24 Cl 0.007 6.993 25 C -0.087 4.087 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.250 0.750 32 H 0.222 0.778 33 H 0.191 0.809 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 9.252 -17.076 7.151 20.696 hybrid contribution 0.023 1.274 0.521 1.377 sum 9.275 -15.801 7.672 19.863 Atomic orbital electron populations 1.69946 1.06058 1.26916 1.50159 1.24987 0.94858 0.99272 0.95082 0.86617 0.79556 0.82940 0.78637 1.20121 1.21252 1.20270 1.21040 0.93074 0.90576 1.51581 0.92439 1.19268 0.94072 0.90467 0.98215 1.21588 0.95999 0.82633 1.00055 1.55455 1.22039 1.22262 1.87146 1.01211 0.73046 0.72755 0.73069 1.93589 1.59858 1.54805 1.86642 1.93567 1.76564 1.85371 1.40213 1.32250 1.12494 1.27524 1.10704 1.22011 0.90671 0.89935 0.89856 1.41856 1.09318 1.60523 1.05539 0.73224 1.18265 0.86893 1.00587 0.88092 1.66513 1.35821 1.16405 1.01479 1.22519 0.86007 0.94324 0.98950 1.21935 0.99890 1.04737 0.93667 1.20853 0.86771 0.98493 0.93169 1.98456 1.20078 1.94949 1.85850 1.18721 0.92494 1.05226 0.92226 0.92797 0.95547 0.95798 0.93311 0.91408 0.75021 0.77836 0.80874 0.82862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.22 9.11 -34.44 -0.31 -14.53 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.46 5.12 -27.89 -0.14 0.31 16 10 C 0.12 2.41 6.16 -4.04 -0.02 2.38 16 11 N -1.11 -19.17 5.44 -10.61 -0.06 -19.22 16 12 S 2.71 43.97 5.15 -107.50 -0.55 43.41 16 13 O -0.96 -16.84 15.91 -57.17 -0.91 -17.75 16 14 O -0.97 -17.30 17.26 -57.17 -0.99 -18.29 16 15 C -0.74 -10.34 6.33 -37.72 -0.24 -10.57 16 16 C 0.21 2.22 11.47 -16.69 -0.19 2.03 16 17 N -0.57 -5.52 6.05 -12.15 -0.07 -5.59 16 18 H 0.43 2.58 8.96 -40.82 -0.37 2.21 16 19 C 0.29 3.76 8.43 -155.69 -1.31 2.45 16 20 N -0.49 -5.86 10.39 -12.29 -0.13 -5.99 16 21 C 0.15 1.43 11.14 -17.51 -0.20 1.23 16 22 C -0.18 -1.89 9.93 -39.40 -0.39 -2.28 16 23 C 0.04 0.58 6.40 -38.95 -0.25 0.33 16 24 Cl -0.02 -0.33 25.12 -51.86 -1.30 -1.63 16 25 C -0.08 -1.13 6.24 -105.08 -0.66 -1.79 16 26 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 30 H 0.07 1.32 7.75 -51.93 -0.40 0.92 16 31 H 0.41 6.91 8.24 -34.47 -0.28 6.62 16 32 H 0.20 1.42 8.06 -52.48 -0.42 1.00 16 33 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 324.84 15.07 4.90 4.90 Total: -1.00 -35.25 324.84 -10.34 -45.59 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -3.13 Total: 2.68 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -3.81 Total: -18.86 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.48 Total: -56.13 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -1.90 Total: -36.04 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 43.97 SS G_CDS: -0.55 Total: 43.41 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.30 Total: -1.63 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.25 -10.34 -45.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344129321.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.946 kcal (2) G-P(sol) polarization free energy of solvation -35.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds